RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 DCAF8L2P0C7V8 631 aa14.99□□□□□ -0.01
RTN3-202ENST00000339997 SUPT5HO00267 1087 aaKnown RBP14.57□□□□□ -0.08
RTN3-202ENST00000339997 NISCHQ9Y2I1 1504 aa14.48□□□□□ -0.09
RTN3-202ENST00000339997 EHMT2Q96KQ7 1210 aa14.44□□□□□ -0.1
RTN3-202ENST00000339997 SHROOM4Q9ULL8 1493 aa14.19□□□□□ -0.14
RTN3-202ENST00000339997 PCGF6Q9BYE7 350 aa13.99□□□□□ -0.17
RTN3-202ENST00000339997 TTBK1Q5TCY1 1321 aaPredicted RBP13.94□□□□□ -0.18
RTN3-202ENST00000339997 FAM9AQ8IZU1 332 aaPredicted RBP13.85□□□□□ -0.19
RTN3-202ENST00000339997 PELP1Q8IZL8 1130 aaKnown RBP13.63□□□□□ -0.23
RTN3-202ENST00000339997 YTHDC1Q96MU7 727 aaKnown RBP13.55□□□□□ -0.24
RTN3-202ENST00000339997 RANGAP1P46060 587 aaPredicted RBP13.54□□□□□ -0.24
RTN3-202ENST00000339997 PPARGC1BQ86YN6 1023 aaKnown RBP13.5□□□□□ -0.25
RTN3-202ENST00000339997 CCER1Q8TC90 406 aaPredicted RBP13.44□□□□□ -0.26
RTN3-202ENST00000339997 CENPBP07199 599 aaPredicted RBP13.42□□□□□ -0.26
RTN3-202ENST00000339997 APLP2Q06481 763 aa13.42□□□□□ -0.26
RTN3-202ENST00000339997 ERICH6Q7L0X2 663 aa13.35□□□□□ -0.27
RTN3-202ENST00000339997 TRIM41Q8WV44 630 aa13.21□□□□□ -0.3
RTN3-202ENST00000339997 HRCP23327 699 aa13.18□□□□□ -0.3
RTN3-202ENST00000339997 ZEB1P37275 1124 aaPredicted RBP13.17□□□□□ -0.3
RTN3-202ENST00000339997 LOC105371045A0A1W2PR82 267 aa13.16□□□□□ -0.3
RTN3-202ENST00000339997 MYT1Q01538 1121 aa13.16□□□□□ -0.3
RTN3-202ENST00000339997 ATP1B4Q9UN42 357 aaPredicted RBP13.16□□□□□ -0.3
RTN3-202ENST00000339997 UBTFP17480 764 aaKnown RBP13.08□□□□□ -0.32
RTN3-202ENST00000339997 NEFLP07196 543 aa13.04□□□□□ -0.32
RTN3-202ENST00000339997 CNGB1Q14028 1251 aaPredicted RBP13.03□□□□□ -0.32
RTN3-202ENST00000339997 TRIM26Q12899 539 aaPredicted RBP12.99□□□□□ -0.33
RTN3-202ENST00000339997 ITGAEP38570 1179 aa12.95□□□□□ -0.34
RTN3-202ENST00000339997 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.93□□□□□ -0.34
RTN3-202ENST00000339997 HNRNPUL2Q1KMD3 747 aaKnown RBP12.89□□□□□ -0.35
RTN3-202ENST00000339997 POLR3GLQ9BT43 218 aa12.85□□□□□ -0.35
RTN3-202ENST00000339997 CHIC1Q5VXU3 224 aa12.83□□□□□ -0.36
RTN3-202ENST00000339997 BCANQ96GW7 911 aa12.81□□□□□ -0.36
RTN3-202ENST00000339997 GTF3C3Q9Y5Q9 886 aa12.8□□□□□ -0.36
RTN3-202ENST00000339997 DIEXFQ68CQ4 756 aaKnown RBP12.79□□□□□ -0.36
RTN3-202ENST00000339997 DAXXQ9UER7 740 aaPredicted RBP12.63□□□□□ -0.39
RTN3-202ENST00000339997 CCDC180Q9P1Z9 1646 aa12.53□□□□□ -0.4
RTN3-202ENST00000339997 RTL5Q5HYW3 569 aaPredicted RBP12.51□□□□□ -0.41
RTN3-202ENST00000339997 NEUROD1Q13562 356 aa12.49□□□□□ -0.41
RTN3-202ENST00000339997 ACIN1Q9UKV3 1341 aaKnown RBP12.47□□□□□ -0.41
RTN3-202ENST00000339997 CLSPNQ9HAW4 1339 aa12.44□□□□□ -0.42
RTN3-202ENST00000339997 ZCCHC6Q5VYS8 1495 aaKnown RBP12.43□□□□□ -0.42
RTN3-202ENST00000339997 BCL11AQ9H165 835 aa12.39□□□□□ -0.43
RTN3-202ENST00000339997 MYT1LQ9UL68 1186 aa12.39□□□□□ -0.43
RTN3-202ENST00000339997 SLC4A1APQ9BWU0 796 aaKnown RBP12.39□□□□□ -0.43
RTN3-202ENST00000339997 ZNF316A6NFI3 1004 aaPredicted RBP12.38□□□□□ -0.43
RTN3-202ENST00000339997 FAM50AQ14320 339 aaKnown RBP12.37□□□□□ -0.43
RTN3-202ENST00000339997 SCAF1Q9H7N4 1312 aaKnown RBP12.34□□□□□ -0.43
RTN3-202ENST00000339997 ZNF326Q5BKZ1 582 aaKnown RBP12.32□□□□□ -0.44
RTN3-202ENST00000339997 EIF5BO60841 1220 aaKnown RBP12.3□□□□□ -0.44
RTN3-202ENST00000339997 CDK11AQ9UQ88 783 aaPredicted RBP12.29□□□□□ -0.44
RTN3-202ENST00000339997 NPM2Q86SE8 214 aaKnown RBP12.28□□□□□ -0.44
RTN3-202ENST00000339997 SLC24A1O60721 1099 aa12.27□□□□□ -0.44
RTN3-202ENST00000339997 TRIM52Q96A61 297 aa12.27□□□□□ -0.45
RTN3-202ENST00000339997 FKBP8Q14318 412 aa12.25□□□□□ -0.45
RTN3-202ENST00000339997 ANP32CO43423 234 aa12.23□□□□□ -0.45
RTN3-202ENST00000339997 NBR1Q14596 966 aa12.18□□□□□ -0.46
RTN3-202ENST00000339997 ARID3CA6NKF2 412 aa12.16□□□□□ -0.46
RTN3-202ENST00000339997 IRX6P78412 446 aaPredicted RBP12.15□□□□□ -0.46
RTN3-202ENST00000339997 MYO15BQ96JP2 1530 aa12.15□□□□□ -0.46
RTN3-202ENST00000339997 SALL2Q9Y467 1007 aaPredicted RBP12.14□□□□□ -0.47
RTN3-202ENST00000339997 SENP3-EIF4A1A0A087X0R7 540 aa12.13□□□□□ -0.47
RTN3-202ENST00000339997 ARXQ96QS3 562 aa12.12□□□□□ -0.47
RTN3-202ENST00000339997 DDX10Q13206 875 aaKnown RBP12.12□□□□□ -0.47
RTN3-202ENST00000339997 P3H3Q8IVL6 736 aa12.12□□□□□ -0.47
RTN3-202ENST00000339997 HIRIP3Q9BW71 556 aaPredicted RBP12.12□□□□□ -0.47
RTN3-202ENST00000339997 MIER1Q8N108 512 aa12.1□□□□□ -0.47
RTN3-202ENST00000339997 DCAF1Q9Y4B6 1507 aa12.07□□□□□ -0.48
RTN3-202ENST00000339997 HNRNPUQ00839 825 aaKnown RBP eCLIP12.07□□□□□ -0.48
RTN3-202ENST00000339997 ANP32AP39687 249 aaKnown RBP12.06□□□□□ -0.48
RTN3-202ENST00000339997 FAM9BQ8IZU0 186 aa12.06□□□□□ -0.48
RTN3-202ENST00000339997 PABPN1Q86U42 306 aaKnown RBP eCLIP12.03□□□□□ -0.48
RTN3-202ENST00000339997 EIF4G1Q04637 1599 aaKnown RBP12□□□□□ -0.49
RTN3-202ENST00000339997 CANXP27824 592 aaKnown RBP12□□□□□ -0.49
RTN3-202ENST00000339997 UNC13AQ9UPW8 1703 aa11.94□□□□□ -0.5
RTN3-202ENST00000339997 RTN4Q9NQC3 1192 aaKnown RBP11.94□□□□□ -0.5
RTN3-202ENST00000339997 CSRNP3Q8WYN3 585 aa11.9□□□□□ -0.5
RTN3-202ENST00000339997 CCDC136Q96JN2 1154 aa11.89□□□□□ -0.51
RTN3-202ENST00000339997 ZBTB47Q9UFB7 747 aaPredicted RBP11.88□□□□□ -0.51
RTN3-202ENST00000339997 ZNF777Q9ULD5 760 aaPredicted RBP11.88□□□□□ -0.51
RTN3-202ENST00000339997 FBLN2P98095 1184 aa11.87□□□□□ -0.51
RTN3-202ENST00000339997 CHIC2Q9UKJ5 165 aa11.83□□□□□ -0.52
RTN3-202ENST00000339997 HSP90AA1P07900 732 aaKnown RBP11.83□□□□□ -0.52
RTN3-202ENST00000339997 ANP32EQ9BTT0 268 aa11.81□□□□□ -0.52
RTN3-202ENST00000339997 MRS2Q9HD23 443 aa11.81□□□□□ -0.52
RTN3-202ENST00000339997 ABCC9O60706 1549 aa11.8□□□□□ -0.52
RTN3-202ENST00000339997 SENP3Q9H4L4 574 aaPredicted RBP11.8□□□□□ -0.52
RTN3-202ENST00000339997 SUPT16HQ9Y5B9 1047 aaKnown RBP11.78□□□□□ -0.52
RTN3-202ENST00000339997 TONSLQ96HA7 1378 aa11.77□□□□□ -0.52
RTN3-202ENST00000339997 TMC1Q8TDI8 760 aa11.76□□□□□ -0.53
RTN3-202ENST00000339997 KDM2AQ9Y2K7 1162 aa11.74□□□□□ -0.53
RTN3-202ENST00000339997 LAS1LQ9Y4W2 734 aaKnown RBP11.74□□□□□ -0.53
RTN3-202ENST00000339997 ANP32BQ92688 251 aaKnown RBP11.7□□□□□ -0.54
RTN3-202ENST00000339997 CHGAP10645 457 aaKnown RBP11.69□□□□□ -0.54
RTN3-202ENST00000339997 TPRNQ4KMQ1 711 aa11.68□□□□□ -0.54
RTN3-202ENST00000339997 UPF2Q9HAU5 1272 aaKnown RBP11.67□□□□□ -0.54
RTN3-202ENST00000339997 B4GALNT3Q6L9W6 998 aa11.66□□□□□ -0.54
RTN3-202ENST00000339997 NEFMP07197 916 aa11.66□□□□□ -0.54
RTN3-202ENST00000339997 GLIPR1L2Q4G1C9 344 aa11.65□□□□□ -0.54
RTN3-202ENST00000339997 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.65□□□□□ -0.54
RTN3-202ENST00000339997 PLPPR3Q6T4P5 718 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms