RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 NISCHQ9Y2I1 1504 aa28.47■■■□□ 2.15
RTN3-204ENST00000354497 ABCC9O60706 1549 aa26.28■■□□□ 1.8
RTN3-204ENST00000354497 AEBP2Q6ZN18 517 aaPredicted RBP26.26■■□□□ 1.79
RTN3-204ENST00000354497 CCDC180Q9P1Z9 1646 aa25.72■■□□□ 1.71
RTN3-204ENST00000354497 CHIC1Q5VXU3 224 aa25.46■■□□□ 1.67
RTN3-204ENST00000354497 DNAJC5BQ9UF47 199 aa24.99■■□□□ 1.59
RTN3-204ENST00000354497 RB1CC1Q8TDY2 1594 aa24.75■■□□□ 1.55
RTN3-204ENST00000354497 NACADO15069 1562 aa24.43■■□□□ 1.5
RTN3-204ENST00000354497 PABPN1Q86U42 306 aaKnown RBP eCLIP24.42■■□□□ 1.5
RTN3-204ENST00000354497 DCAF8L2P0C7V8 631 aa24.4■■□□□ 1.5
RTN3-204ENST00000354497 UNC13AQ9UPW8 1703 aa24.14■■□□□ 1.45
RTN3-204ENST00000354497 BICRAQ9NZM4 1560 aa24■■□□□ 1.43
RTN3-204ENST00000354497 MYO15BQ96JP2 1530 aa23.86■■□□□ 1.41
RTN3-204ENST00000354497 CECR2Q9BXF3 1484 aa23.69■■□□□ 1.38
RTN3-204ENST00000354497 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
RTN3-204ENST00000354497 SHROOM4Q9ULL8 1493 aa23.6■■□□□ 1.37
RTN3-204ENST00000354497 SCRIBQ14160 1630 aa23.52■■□□□ 1.36
RTN3-204ENST00000354497 ZCCHC6Q5VYS8 1495 aaKnown RBP23.49■■□□□ 1.35
RTN3-204ENST00000354497 EIF4G1Q04637 1599 aaKnown RBP23.48■■□□□ 1.35
RTN3-204ENST00000354497 DCAF1Q9Y4B6 1507 aa23.42■■□□□ 1.34
RTN3-204ENST00000354497 DNAJC5Q9H3Z4 198 aa23.26■■□□□ 1.31
RTN3-204ENST00000354497 CUX2O14529 1486 aa22.76■■□□□ 1.23
RTN3-204ENST00000354497 ERCC6Q03468 1493 aa22.75■■□□□ 1.23
RTN3-204ENST00000354497 NCAPD3P42695 1498 aa22.55■■□□□ 1.2
RTN3-204ENST00000354497 ATAD2BQ9ULI0 1458 aa22.44■■□□□ 1.18
RTN3-204ENST00000354497 NESP48681 1621 aa22.42■■□□□ 1.18
RTN3-204ENST00000354497 PHF23Q9BUL5 403 aaPredicted RBP22.38■■□□□ 1.17
RTN3-204ENST00000354497 SMARCA2P51531 1590 aa22.36■■□□□ 1.17
RTN3-204ENST00000354497 HMGXB3Q12766 1538 aa22.35■■□□□ 1.17
RTN3-204ENST00000354497 SMARCA4P51532 1647 aa22.32■■□□□ 1.16
RTN3-204ENST00000354497 SENP3Q9H4L4 574 aaPredicted RBP22.3■■□□□ 1.16
RTN3-204ENST00000354497 BAZ1BQ9UIG0 1483 aaKnown RBP22.25■■□□□ 1.15
RTN3-204ENST00000354497 THOC2Q8NI27 1593 aaKnown RBP22.24■■□□□ 1.15
RTN3-204ENST00000354497 TRIM41Q8WV44 630 aa22.22■■□□□ 1.15
RTN3-204ENST00000354497 BAZ1AQ9NRL2 1556 aaPredicted RBP22.13■■□□□ 1.13
RTN3-204ENST00000354497 LAMC3Q9Y6N6 1575 aa22.13■■□□□ 1.13
RTN3-204ENST00000354497 KIF21AQ7Z4S6 1674 aa22.09■■□□□ 1.13
RTN3-204ENST00000354497 PDS5BQ9NTI5 1447 aa22.06■■□□□ 1.12
RTN3-204ENST00000354497 PEG3Q9GZU2 1588 aa22.03■■□□□ 1.12
RTN3-204ENST00000354497 MROH2BQ7Z745 1585 aa21.95■■□□□ 1.11
RTN3-204ENST00000354497 MRC2Q9UBG0 1479 aa21.9■■□□□ 1.1
RTN3-204ENST00000354497 CADPSQ9ULU8 1353 aa21.88■■□□□ 1.09
RTN3-204ENST00000354497 WDR62O43379 1518 aa21.83■■□□□ 1.08
RTN3-204ENST00000354497 CEP164Q9UPV0 1460 aa21.73■■□□□ 1.07
RTN3-204ENST00000354497 WIZO95785 1651 aa21.69■■□□□ 1.06
RTN3-204ENST00000354497 OSCARQ8IYS5 282 aa21.68■■□□□ 1.06
RTN3-204ENST00000354497 FANCD2Q9BXW9 1451 aa21.66■■□□□ 1.06
RTN3-204ENST00000354497 CFTRP13569 1480 aa21.51■■□□□ 1.03
RTN3-204ENST00000354497 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
RTN3-204ENST00000354497 RIMBP3CA6NJZ7 1639 aa21.45■■□□□ 1.02
RTN3-204ENST00000354497 RIMBP3BA6NNM3 1639 aa21.45■■□□□ 1.02
RTN3-204ENST00000354497 RIMBP3Q9UFD9 1639 aa21.45■■□□□ 1.02
RTN3-204ENST00000354497 TOP2AP11388 1531 aaKnown RBP21.36■■□□□ 1.01
RTN3-204ENST00000354497 ARHGEF11O15085 1522 aa21.33■■□□□ 1.01
RTN3-204ENST00000354497 ZNF608Q9ULD9 1512 aaPredicted RBP21.33■■□□□ 1
RTN3-204ENST00000354497 RSF1Q96T23 1441 aaPredicted RBP21.32■■□□□ 1
RTN3-204ENST00000354497 IFT140Q96RY7 1462 aa21.3■■□□□ 1
RTN3-204ENST00000354497 CYB5RLQ6IPT4 315 aa21.26■□□□□ 0.99
RTN3-204ENST00000354497 PRDM2Q13029 1718 aa21.24■□□□□ 0.99
RTN3-204ENST00000354497 TRHP20396 242 aaPredicted RBP21.23■□□□□ 0.99
RTN3-204ENST00000354497 EIF4G3O43432 1585 aaKnown RBP21.19■□□□□ 0.98
RTN3-204ENST00000354497 TOPBP1Q92547 1522 aa21.19■□□□□ 0.98
RTN3-204ENST00000354497 FBLN2P98095 1184 aa21.13■□□□□ 0.97
RTN3-204ENST00000354497 CCDC88BA6NC98 1476 aa21.13■□□□□ 0.97
RTN3-204ENST00000354497 CHD1O14646 1710 aa21.1■□□□□ 0.97
RTN3-204ENST00000354497 AQRO60306 1485 aaKnown RBP eCLIP21.09■□□□□ 0.972e-7■■■■□ 19.7
RTN3-204ENST00000354497 ARAP1Q96P48 1450 aa21.09■□□□□ 0.97
RTN3-204ENST00000354497 ABCC8Q09428 1581 aa21.08■□□□□ 0.96
RTN3-204ENST00000354497 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
RTN3-204ENST00000354497 TARBP1Q13395 1621 aaKnown RBP21■□□□□ 0.95
RTN3-204ENST00000354497 POLA1P09884 1462 aaPredicted RBP20.94■□□□□ 0.94
RTN3-204ENST00000354497 RAD54L2Q9Y4B4 1467 aa20.91■□□□□ 0.94
RTN3-204ENST00000354497 TDRD9Q8NDG6 1382 aaKnown RBP20.9■□□□□ 0.94
RTN3-204ENST00000354497 SNAPC4Q5SXM2 1469 aa20.87■□□□□ 0.93
RTN3-204ENST00000354497 SOGA1O94964 1423 aa20.85■□□□□ 0.93
RTN3-204ENST00000354497 CHMP7Q8WUX9 453 aaPredicted RBP20.85■□□□□ 0.93
RTN3-204ENST00000354497 CLASP1Q7Z460 1538 aa20.83■□□□□ 0.92
RTN3-204ENST00000354497 SYNJ1O43426 1573 aa20.81■□□□□ 0.92
RTN3-204ENST00000354497 FGD5Q6ZNL6 1462 aa20.77■□□□□ 0.91
RTN3-204ENST00000354497 MAGI1Q96QZ7 1491 aaPredicted RBP20.74■□□□□ 0.91
RTN3-204ENST00000354497 WDR97A6NE52 1622 aa20.72■□□□□ 0.91
RTN3-204ENST00000354497 FOXD1Q16676 465 aa20.72■□□□□ 0.91
RTN3-204ENST00000354497 GRIN2BQ13224 1484 aa20.72■□□□□ 0.91
RTN3-204ENST00000354497 SYNJ2O15056 1496 aa20.7■□□□□ 0.9
RTN3-204ENST00000354497 GAPVD1Q14C86 1478 aa20.68■□□□□ 0.9
RTN3-204ENST00000354497 CUX1P39880 1505 aa20.65■□□□□ 0.9
RTN3-204ENST00000354497 PBRM1Q86U86 1689 aa20.6■□□□□ 0.89
RTN3-204ENST00000354497 PLPPR3Q6T4P5 718 aa20.6■□□□□ 0.89
RTN3-204ENST00000354497 ERCC6L2Q5T890 1561 aa20.51■□□□□ 0.87
RTN3-204ENST00000354497 ABCA5Q8WWZ7 1642 aa20.47■□□□□ 0.87
RTN3-204ENST00000354497 ABCA10Q8WWZ4 1543 aa20.46■□□□□ 0.87
RTN3-204ENST00000354497 GRIN2AQ12879 1464 aa20.45■□□□□ 0.86
RTN3-204ENST00000354497 CEP170Q5SW79 1584 aa20.43■□□□□ 0.86
RTN3-204ENST00000354497 ADAMTS12P58397 1594 aa20.38■□□□□ 0.85
RTN3-204ENST00000354497 NUP160Q12769 1436 aa20.36■□□□□ 0.85
RTN3-204ENST00000354497 WRNQ14191 1432 aaPredicted RBP eCLIP20.33■□□□□ 0.84
RTN3-204ENST00000354497 SHROOM2Q13796 1616 aa20.31■□□□□ 0.84
RTN3-204ENST00000354497 FHAD1B1AJZ9 1412 aa20.3■□□□□ 0.84
RTN3-204ENST00000354497 KIF13AQ9H1H9 1805 aa20.3■□□□□ 0.84
RTN3-204ENST00000354497 PRG4Q92954 1404 aaPredicted RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms