RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NISCHQ9Y2I1 1504 aa25.75■■□□□ 1.71
SHMT2-207ENST00000553837 CCDC180Q9P1Z9 1646 aa21.98■■□□□ 1.11
SHMT2-207ENST00000553837 SHROOM4Q9ULL8 1493 aa21.76■■□□□ 1.07
SHMT2-207ENST00000553837 ZCCHC6Q5VYS8 1495 aaKnown RBP21.75■■□□□ 1.07
SHMT2-207ENST00000553837 DCAF8L2P0C7V8 631 aa21.29■■□□□ 1
SHMT2-207ENST00000553837 SUPT5HO00267 1087 aaKnown RBP21.22■□□□□ 0.99
SHMT2-207ENST00000553837 DCAF1Q9Y4B6 1507 aa21.13■□□□□ 0.97
SHMT2-207ENST00000553837 CHIC1Q5VXU3 224 aa20.59■□□□□ 0.89
SHMT2-207ENST00000553837 MYO15BQ96JP2 1530 aa20.58■□□□□ 0.89
SHMT2-207ENST00000553837 SCRIBQ14160 1630 aa20.56■□□□□ 0.88
SHMT2-207ENST00000553837 ABCC9O60706 1549 aa20.49■□□□□ 0.87
SHMT2-207ENST00000553837 NACADO15069 1562 aa20.34■□□□□ 0.85
SHMT2-207ENST00000553837 PELP1Q8IZL8 1130 aaKnown RBP20.33■□□□□ 0.85
SHMT2-207ENST00000553837 RSF1Q96T23 1441 aaPredicted RBP20.3■□□□□ 0.84
SHMT2-207ENST00000553837 HRCP23327 699 aa20.3■□□□□ 0.84
SHMT2-207ENST00000553837 CECR2Q9BXF3 1484 aa20.12■□□□□ 0.81
SHMT2-207ENST00000553837 RB1CC1Q8TDY2 1594 aa20.06■□□□□ 0.8
SHMT2-207ENST00000553837 MROH2BQ7Z745 1585 aa20.03■□□□□ 0.8
SHMT2-207ENST00000553837 LOC105371045A0A1W2PR82 267 aa19.97■□□□□ 0.79
SHMT2-207ENST00000553837 WIZO95785 1651 aa19.91■□□□□ 0.78
SHMT2-207ENST00000553837 MYT1Q01538 1121 aa19.88■□□□□ 0.77
SHMT2-207ENST00000553837 UNC13AQ9UPW8 1703 aa19.81■□□□□ 0.76
SHMT2-207ENST00000553837 PCGF6Q9BYE7 350 aa19.78■□□□□ 0.76
SHMT2-207ENST00000553837 TRIM41Q8WV44 630 aa19.77■□□□□ 0.75
SHMT2-207ENST00000553837 BAZ1AQ9NRL2 1556 aaPredicted RBP19.76■□□□□ 0.75
SHMT2-207ENST00000553837 PPARGC1BQ86YN6 1023 aaKnown RBP19.7■□□□□ 0.74
SHMT2-207ENST00000553837 SMARCA4P51532 1647 aa19.65■□□□□ 0.74
SHMT2-207ENST00000553837 FAM9AQ8IZU1 332 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-207ENST00000553837 EIF4G1Q04637 1599 aaKnown RBP19.6■□□□□ 0.73
SHMT2-207ENST00000553837 BICRAQ9NZM4 1560 aa19.58■□□□□ 0.73
SHMT2-207ENST00000553837 TOP2AP11388 1531 aaKnown RBP19.57■□□□□ 0.72
SHMT2-207ENST00000553837 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
SHMT2-207ENST00000553837 CCDC88BA6NC98 1476 aa19.49■□□□□ 0.71
SHMT2-207ENST00000553837 SMARCA2P51531 1590 aa19.48■□□□□ 0.71
SHMT2-207ENST00000553837 EHMT2Q96KQ7 1210 aa19.44■□□□□ 0.7
SHMT2-207ENST00000553837 ABCC8Q09428 1581 aa19.38■□□□□ 0.69
SHMT2-207ENST00000553837 TRIM26Q12899 539 aaPredicted RBP19.37■□□□□ 0.69
SHMT2-207ENST00000553837 PEG3Q9GZU2 1588 aa19.3■□□□□ 0.68
SHMT2-207ENST00000553837 ZEB1P37275 1124 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-207ENST00000553837 ATAD2BQ9ULI0 1458 aa19.19■□□□□ 0.66
SHMT2-207ENST00000553837 SOGA1O94964 1423 aa19.16■□□□□ 0.66
SHMT2-207ENST00000553837 SCAF1Q9H7N4 1312 aaKnown RBP19.13■□□□□ 0.65
SHMT2-207ENST00000553837 RUSC2Q8N2Y8 1516 aa19.1■□□□□ 0.65
SHMT2-207ENST00000553837 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
SHMT2-207ENST00000553837 WRNQ14191 1432 aaPredicted RBP eCLIP19.04■□□□□ 0.64
SHMT2-207ENST00000553837 SYNJ1O43426 1573 aa19.01■□□□□ 0.63
SHMT2-207ENST00000553837 CSRNP3Q8WYN3 585 aa18.98■□□□□ 0.63
SHMT2-207ENST00000553837 EEA1Q15075 1411 aa18.97■□□□□ 0.63
SHMT2-207ENST00000553837 TTBK1Q5TCY1 1321 aaPredicted RBP18.95■□□□□ 0.62
SHMT2-207ENST00000553837 CEP162Q5TB80 1403 aa18.95■□□□□ 0.62
SHMT2-207ENST00000553837 TNIKQ9UKE5 1360 aa18.93■□□□□ 0.62
SHMT2-207ENST00000553837 UBTFP17480 764 aaKnown RBP18.85■□□□□ 0.61
SHMT2-207ENST00000553837 NCAPD3P42695 1498 aa18.85■□□□□ 0.61
SHMT2-207ENST00000553837 GOLGA3Q08378 1498 aa18.85■□□□□ 0.61
SHMT2-207ENST00000553837 HMGXB3Q12766 1538 aa18.82■□□□□ 0.6
SHMT2-207ENST00000553837 DNAJC5BQ9UF47 199 aa18.79■□□□□ 0.6
SHMT2-207ENST00000553837 TOP2BQ02880 1626 aa18.77■□□□□ 0.6
SHMT2-207ENST00000553837 KIF21BO75037 1637 aa18.77■□□□□ 0.59
SHMT2-207ENST00000553837 CEP164Q9UPV0 1460 aa18.75■□□□□ 0.59
SHMT2-207ENST00000553837 ACIN1Q9UKV3 1341 aaKnown RBP18.74■□□□□ 0.59
SHMT2-207ENST00000553837 BIVM-ERCC5R4GMW8 1640 aa18.72■□□□□ 0.59
SHMT2-207ENST00000553837 RAPGEF2Q9Y4G8 1499 aa18.69■□□□□ 0.58
SHMT2-207ENST00000553837 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-207ENST00000553837 CUX1P39880 1505 aa18.65■□□□□ 0.58
SHMT2-207ENST00000553837 CFTRP13569 1480 aa18.64■□□□□ 0.57
SHMT2-207ENST00000553837 CLIP1P30622 1438 aa18.63■□□□□ 0.57
SHMT2-207ENST00000553837 NEUROD1Q13562 356 aa18.61■□□□□ 0.57
SHMT2-207ENST00000553837 CENPBP07199 599 aaPredicted RBP18.57■□□□□ 0.56
SHMT2-207ENST00000553837 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-207ENST00000553837 PRXQ9BXM0 1461 aa18.54■□□□□ 0.56
SHMT2-207ENST00000553837 CC2D2AQ9P2K1 1620 aa18.54■□□□□ 0.56
SHMT2-207ENST00000553837 GTF3C3Q9Y5Q9 886 aa18.54■□□□□ 0.56
SHMT2-207ENST00000553837 RANGAP1P46060 587 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-207ENST00000553837 VPS8Q8N3P4 1428 aa18.53■□□□□ 0.56
SHMT2-207ENST00000553837 ERICH3Q5RHP9 1530 aa18.49■□□□□ 0.55
SHMT2-207ENST00000553837 PRDM2Q13029 1718 aa18.48■□□□□ 0.55
SHMT2-207ENST00000553837 CADPSQ9ULU8 1353 aa18.45■□□□□ 0.54
SHMT2-207ENST00000553837 KIF27Q86VH2 1401 aa18.45■□□□□ 0.54
SHMT2-207ENST00000553837 DIEXFQ68CQ4 756 aaKnown RBP18.41■□□□□ 0.54
SHMT2-207ENST00000553837 ARAP1Q96P48 1450 aa18.4■□□□□ 0.54
SHMT2-207ENST00000553837 CUX2O14529 1486 aa18.34■□□□□ 0.53
SHMT2-207ENST00000553837 HNRNPUL2Q1KMD3 747 aaKnown RBP18.33■□□□□ 0.52
SHMT2-207ENST00000553837 FGD5Q6ZNL6 1462 aa18.32■□□□□ 0.52
SHMT2-207ENST00000553837 APLP2Q06481 763 aa18.32■□□□□ 0.52
SHMT2-207ENST00000553837 IGF1RP08069 1367 aa18.32■□□□□ 0.52
SHMT2-207ENST00000553837 FANCD2Q9BXW9 1451 aa18.27■□□□□ 0.52
SHMT2-207ENST00000553837 ARHGAP35Q9NRY4 1499 aa18.27■□□□□ 0.51
SHMT2-207ENST00000553837 KANK4Q5T7N3 995 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-207ENST00000553837 NESP48681 1621 aa18.25■□□□□ 0.51
SHMT2-207ENST00000553837 CARMIL1Q5VZK9 1371 aa18.2■□□□□ 0.5
SHMT2-207ENST00000553837 RAD54L2Q9Y4B4 1467 aa18.18■□□□□ 0.5
SHMT2-207ENST00000553837 DNMBPQ6XZF7 1577 aa18.17■□□□□ 0.5
SHMT2-207ENST00000553837 TOPBP1Q92547 1522 aa18.15■□□□□ 0.5
SHMT2-207ENST00000553837 POLA1P09884 1462 aaPredicted RBP18.14■□□□□ 0.49
SHMT2-207ENST00000553837 ABCA10Q8WWZ4 1543 aa18.1■□□□□ 0.49
SHMT2-207ENST00000553837 ZNF316A6NFI3 1004 aaPredicted RBP18.08■□□□□ 0.49
SHMT2-207ENST00000553837 RRBP1Q9P2E9 1410 aaKnown RBP18.08■□□□□ 0.48
SHMT2-207ENST00000553837 URB2Q14146 1524 aaKnown RBP18.06■□□□□ 0.48
SHMT2-207ENST00000553837 BCL11AQ9H165 835 aa18.06■□□□□ 0.48
SHMT2-207ENST00000553837 LAMC3Q9Y6N6 1575 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms