RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 NISCHQ9Y2I1 1504 aa19.46■□□□□ 0.71
RTN3-208ENST00000537981 SLC24A1O60721 1099 aa18.97■□□□□ 0.63
RTN3-208ENST00000537981 HRCP23327 699 aa18.38■□□□□ 0.53
RTN3-208ENST00000537981 PPARGC1BQ86YN6 1023 aaKnown RBP18.29■□□□□ 0.52
RTN3-208ENST00000537981 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
RTN3-208ENST00000537981 PELP1Q8IZL8 1130 aaKnown RBP18.13■□□□□ 0.49
RTN3-208ENST00000537981 PCGF6Q9BYE7 350 aa17.89■□□□□ 0.45
RTN3-208ENST00000537981 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
RTN3-208ENST00000537981 EHMT2Q96KQ7 1210 aa17.81■□□□□ 0.44
RTN3-208ENST00000537981 MYO15BQ96JP2 1530 aa17.65■□□□□ 0.42
RTN3-208ENST00000537981 MYT1Q01538 1121 aa17.43■□□□□ 0.38
RTN3-208ENST00000537981 PLPPR3Q6T4P5 718 aa17.39■□□□□ 0.37
RTN3-208ENST00000537981 SUPT5HO00267 1087 aaKnown RBP17.38■□□□□ 0.37
RTN3-208ENST00000537981 SHROOM4Q9ULL8 1493 aa17.32■□□□□ 0.36
RTN3-208ENST00000537981 RTN4Q9NQC3 1192 aaKnown RBP17.19■□□□□ 0.34
RTN3-208ENST00000537981 NEUROD1Q13562 356 aa17.13■□□□□ 0.33
RTN3-208ENST00000537981 CCDC180Q9P1Z9 1646 aa17.08■□□□□ 0.33
RTN3-208ENST00000537981 DAXXQ9UER7 740 aaPredicted RBP17.07■□□□□ 0.32
RTN3-208ENST00000537981 ACIN1Q9UKV3 1341 aaKnown RBP17.06■□□□□ 0.32
RTN3-208ENST00000537981 GTF3C3Q9Y5Q9 886 aa17.05■□□□□ 0.32
RTN3-208ENST00000537981 AEBP2Q6ZN18 517 aaPredicted RBP17.03■□□□□ 0.32
RTN3-208ENST00000537981 LOC105371045A0A1W2PR82 267 aa17■□□□□ 0.31
RTN3-208ENST00000537981 DCAF1Q9Y4B6 1507 aa16.98■□□□□ 0.31
RTN3-208ENST00000537981 TRIM26Q12899 539 aaPredicted RBP16.96■□□□□ 0.3
RTN3-208ENST00000537981 ABCC9O60706 1549 aa16.95■□□□□ 0.3
RTN3-208ENST00000537981 TTBK1Q5TCY1 1321 aaPredicted RBP16.9■□□□□ 0.3
RTN3-208ENST00000537981 NCBP3Q53F19 620 aaKnown RBP16.86■□□□□ 0.29
RTN3-208ENST00000537981 ZEB1P37275 1124 aaPredicted RBP16.78■□□□□ 0.28
RTN3-208ENST00000537981 BCL11AQ9H165 835 aa16.76■□□□□ 0.27
RTN3-208ENST00000537981 FAM9AQ8IZU1 332 aaPredicted RBP16.72■□□□□ 0.27
RTN3-208ENST00000537981 AMER1Q5JTC6 1135 aaPredicted RBP16.63■□□□□ 0.25
RTN3-208ENST00000537981 KCNA4P22459 653 aa16.61■□□□□ 0.25
RTN3-208ENST00000537981 CENPBP07199 599 aaPredicted RBP16.6■□□□□ 0.25
RTN3-208ENST00000537981 DCAF8L2P0C7V8 631 aa16.6■□□□□ 0.25
RTN3-208ENST00000537981 CSRNP3Q8WYN3 585 aa16.53■□□□□ 0.24
RTN3-208ENST00000537981 PRKCSHP14314 528 aaPredicted RBP16.53■□□□□ 0.24
RTN3-208ENST00000537981 PHF23Q9BUL5 403 aaPredicted RBP16.53■□□□□ 0.24
RTN3-208ENST00000537981 DIEXFQ68CQ4 756 aaKnown RBP16.51■□□□□ 0.23
RTN3-208ENST00000537981 YTHDC1Q96MU7 727 aaKnown RBP16.5■□□□□ 0.23
RTN3-208ENST00000537981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.43■□□□□ 0.22
RTN3-208ENST00000537981 ANP32EQ9BTT0 268 aa16.33■□□□□ 0.2
RTN3-208ENST00000537981 APLP2Q06481 763 aa16.29■□□□□ 0.2
RTN3-208ENST00000537981 ERICH6Q7L0X2 663 aa16.26■□□□□ 0.19
RTN3-208ENST00000537981 CCER1Q8TC90 406 aaPredicted RBP16.25■□□□□ 0.19
RTN3-208ENST00000537981 ZCCHC6Q5VYS8 1495 aaKnown RBP16.21■□□□□ 0.19
RTN3-208ENST00000537981 TRIM41Q8WV44 630 aa16.18■□□□□ 0.18
RTN3-208ENST00000537981 TSHZ2Q9NRE2 1034 aa16.15■□□□□ 0.18
RTN3-208ENST00000537981 TIMELESSQ9UNS1 1208 aa16.15■□□□□ 0.18
RTN3-208ENST00000537981 MIER1Q8N108 512 aa16.14■□□□□ 0.17
RTN3-208ENST00000537981 RB1CC1Q8TDY2 1594 aa16.13■□□□□ 0.17
RTN3-208ENST00000537981 NACADO15069 1562 aa16.1■□□□□ 0.17
RTN3-208ENST00000537981 ARXQ96QS3 562 aa16.1■□□□□ 0.17
RTN3-208ENST00000537981 SUPT16HQ9Y5B9 1047 aaKnown RBP16.06■□□□□ 0.16
RTN3-208ENST00000537981 ZNF316A6NFI3 1004 aaPredicted RBP16■□□□□ 0.15
RTN3-208ENST00000537981 PABPN1Q86U42 306 aaKnown RBP eCLIP15.97■□□□□ 0.15
RTN3-208ENST00000537981 TULP1O00294 542 aaPredicted RBP15.88■□□□□ 0.13
RTN3-208ENST00000537981 TAOK2Q9UL54 1235 aa15.88■□□□□ 0.13
RTN3-208ENST00000537981 SCRIBQ14160 1630 aa15.86■□□□□ 0.13
RTN3-208ENST00000537981 BCANQ96GW7 911 aa15.81■□□□□ 0.12
RTN3-208ENST00000537981 UNC13AQ9UPW8 1703 aa15.78■□□□□ 0.12
RTN3-208ENST00000537981 ANO8Q9HCE9 1232 aaPredicted RBP15.78■□□□□ 0.12
RTN3-208ENST00000537981 MSH5O43196 834 aa15.73■□□□□ 0.11
RTN3-208ENST00000537981 BICRAQ9NZM4 1560 aa15.69■□□□□ 0.1
RTN3-208ENST00000537981 RBM19Q9Y4C8 960 aaKnown RBP15.68■□□□□ 0.1
RTN3-208ENST00000537981 TPRNQ4KMQ1 711 aa15.63■□□□□ 0.09
RTN3-208ENST00000537981 RANGAP1P46060 587 aaPredicted RBP15.61■□□□□ 0.09
RTN3-208ENST00000537981 HOMEZQ8IX15 550 aa15.6■□□□□ 0.09
RTN3-208ENST00000537981 SLC4A1APQ9BWU0 796 aaKnown RBP15.6■□□□□ 0.09
RTN3-208ENST00000537981 KCNH8Q96L42 1107 aa15.58■□□□□ 0.09
RTN3-208ENST00000537981 CLSPNQ9HAW4 1339 aa15.58■□□□□ 0.09
RTN3-208ENST00000537981 ITGAEP38570 1179 aa15.57■□□□□ 0.08
RTN3-208ENST00000537981 CCDC136Q96JN2 1154 aa15.55■□□□□ 0.08
RTN3-208ENST00000537981 SALL2Q9Y467 1007 aaPredicted RBP15.55■□□□□ 0.08
RTN3-208ENST00000537981 DNAJC5BQ9UF47 199 aa15.54■□□□□ 0.08
RTN3-208ENST00000537981 KLHL34Q8N239 644 aa15.54■□□□□ 0.08
RTN3-208ENST00000537981 FKBP8Q14318 412 aa15.53■□□□□ 0.08
RTN3-208ENST00000537981 DEKP35659 375 aaKnown RBP15.46■□□□□ 0.07
RTN3-208ENST00000537981 HNRNPUL2Q1KMD3 747 aaKnown RBP15.44■□□□□ 0.06
RTN3-208ENST00000537981 PODXL2Q9NZ53 605 aa15.41■□□□□ 0.06
RTN3-208ENST00000537981 PLCB2Q00722 1185 aa15.39■□□□□ 0.05
RTN3-208ENST00000537981 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.35■□□□□ 0.05
RTN3-208ENST00000537981 RSF1Q96T23 1441 aaPredicted RBP15.29■□□□□ 0.04
RTN3-208ENST00000537981 EIF5BO60841 1220 aaKnown RBP15.29■□□□□ 0.04
RTN3-208ENST00000537981 CECR2Q9BXF3 1484 aa15.29■□□□□ 0.04
RTN3-208ENST00000537981 WRNQ14191 1432 aaPredicted RBP eCLIP15.28■□□□□ 0.04
RTN3-208ENST00000537981 EIF4G1Q04637 1599 aaKnown RBP15.28■□□□□ 0.04
RTN3-208ENST00000537981 IL27Q8NEV9 243 aa15.27■□□□□ 0.04
RTN3-208ENST00000537981 NBR1Q14596 966 aa15.25■□□□□ 0.03
RTN3-208ENST00000537981 FANCIQ9NVI1 1328 aa15.25■□□□□ 0.03
RTN3-208ENST00000537981 HAP1P54257 671 aaPredicted RBP15.25■□□□□ 0.03
RTN3-208ENST00000537981 CEP162Q5TB80 1403 aa15.25■□□□□ 0.03
RTN3-208ENST00000537981 CC2D2AQ9P2K1 1620 aa15.22■□□□□ 0.03
RTN3-208ENST00000537981 UBE2Q2Q8WVN8 375 aa15.21■□□□□ 0.03
RTN3-208ENST00000537981 IRX6P78412 446 aaPredicted RBP15.19■□□□□ 0.02
RTN3-208ENST00000537981 TRIM52Q96A61 297 aa15.19■□□□□ 0.02
RTN3-208ENST00000537981 ZBTB22O15209 634 aa15.17■□□□□ 0.02
RTN3-208ENST00000537981 NEFLP07196 543 aa15.16■□□□□ 0.02
RTN3-208ENST00000537981 PAK3O75914 559 aaPredicted RBP15.14■□□□□ 0.01
RTN3-208ENST00000537981 MROH2BQ7Z745 1585 aa15.08■□□□□ 0.01
RTN3-208ENST00000537981 SMARCA4P51532 1647 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms