RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 NISCHQ9Y2I1 1504 aa17.92■□□□□ 0.46
RTN3-206ENST00000377819 DCAF8L2P0C7V8 631 aa17.71■□□□□ 0.43
RTN3-206ENST00000377819 PELP1Q8IZL8 1130 aaKnown RBP17.6■□□□□ 0.41
RTN3-206ENST00000377819 ERICH6Q7L0X2 663 aa16.83■□□□□ 0.28
RTN3-206ENST00000377819 CCER1Q8TC90 406 aaPredicted RBP16.81■□□□□ 0.28
RTN3-206ENST00000377819 FAM9AQ8IZU1 332 aaPredicted RBP16.71■□□□□ 0.27
RTN3-206ENST00000377819 APLP2Q06481 763 aa16.65■□□□□ 0.26
RTN3-206ENST00000377819 SUPT5HO00267 1087 aaKnown RBP16.48■□□□□ 0.23
RTN3-206ENST00000377819 EHMT2Q96KQ7 1210 aa16.37■□□□□ 0.21
RTN3-206ENST00000377819 CENPBP07199 599 aaPredicted RBP16.24■□□□□ 0.19
RTN3-206ENST00000377819 NEFLP07196 543 aa16.18■□□□□ 0.18
RTN3-206ENST00000377819 MYT1Q01538 1121 aa16.12■□□□□ 0.17
RTN3-206ENST00000377819 DAXXQ9UER7 740 aaPredicted RBP16.08■□□□□ 0.16
RTN3-206ENST00000377819 YTHDC1Q96MU7 727 aaKnown RBP16.05■□□□□ 0.16
RTN3-206ENST00000377819 CCDC180Q9P1Z9 1646 aa16.03■□□□□ 0.16
RTN3-206ENST00000377819 PCGF6Q9BYE7 350 aa15.9■□□□□ 0.14
RTN3-206ENST00000377819 TTBK1Q5TCY1 1321 aaPredicted RBP15.87■□□□□ 0.13
RTN3-206ENST00000377819 ATP1B4Q9UN42 357 aaPredicted RBP15.84■□□□□ 0.13
RTN3-206ENST00000377819 ZEB1P37275 1124 aaPredicted RBP15.73■□□□□ 0.11
RTN3-206ENST00000377819 RANGAP1P46060 587 aaPredicted RBP15.69■□□□□ 0.1
RTN3-206ENST00000377819 MYT1LQ9UL68 1186 aa15.6■□□□□ 0.09
RTN3-206ENST00000377819 SHROOM4Q9ULL8 1493 aa15.54■□□□□ 0.08
RTN3-206ENST00000377819 RTL5Q5HYW3 569 aaPredicted RBP15.53■□□□□ 0.08
RTN3-206ENST00000377819 CLSPNQ9HAW4 1339 aa15.53■□□□□ 0.08
RTN3-206ENST00000377819 ZNF316A6NFI3 1004 aaPredicted RBP15.52■□□□□ 0.07
RTN3-206ENST00000377819 POLR3GLQ9BT43 218 aa15.48■□□□□ 0.07
RTN3-206ENST00000377819 UBTFP17480 764 aaKnown RBP15.39■□□□□ 0.05
RTN3-206ENST00000377819 SLC4A1APQ9BWU0 796 aaKnown RBP15.38■□□□□ 0.05
RTN3-206ENST00000377819 ZBTB47Q9UFB7 747 aaPredicted RBP15.31■□□□□ 0.04
RTN3-206ENST00000377819 DCAF1Q9Y4B6 1507 aa15.28■□□□□ 0.04
RTN3-206ENST00000377819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.27■□□□□ 0.03
RTN3-206ENST00000377819 HNRNPUL2Q1KMD3 747 aaKnown RBP15.27■□□□□ 0.03
RTN3-206ENST00000377819 CNGB1Q14028 1251 aaPredicted RBP15.25■□□□□ 0.03
RTN3-206ENST00000377819 ZCCHC6Q5VYS8 1495 aaKnown RBP15.24■□□□□ 0.03
RTN3-206ENST00000377819 TRIM41Q8WV44 630 aa15.22■□□□□ 0.03
RTN3-206ENST00000377819 CHIC1Q5VXU3 224 aa15.22■□□□□ 0.03
RTN3-206ENST00000377819 MYO15BQ96JP2 1530 aa15.12■□□□□ 0.01
RTN3-206ENST00000377819 ITGAEP38570 1179 aa15.05■□□□□ -0
RTN3-206ENST00000377819 SLC24A1O60721 1099 aa15.02■□□□□ -0
RTN3-206ENST00000377819 NEFMP07197 916 aa14.95□□□□□ -0.02
RTN3-206ENST00000377819 ANP32BQ92688 251 aaKnown RBP14.93□□□□□ -0.02
RTN3-206ENST00000377819 BCL11AQ9H165 835 aa14.92□□□□□ -0.02
RTN3-206ENST00000377819 CDK11BP21127 795 aaKnown RBP14.88□□□□□ -0.03
RTN3-206ENST00000377819 CDK11AQ9UQ88 783 aaPredicted RBP14.88□□□□□ -0.03
RTN3-206ENST00000377819 CANXP27824 592 aaKnown RBP14.84□□□□□ -0.03
RTN3-206ENST00000377819 GLIPR1L2Q4G1C9 344 aa14.82□□□□□ -0.04
RTN3-206ENST00000377819 EIF5BO60841 1220 aaKnown RBP14.82□□□□□ -0.04
RTN3-206ENST00000377819 PPARGC1BQ86YN6 1023 aaKnown RBP14.81□□□□□ -0.04
RTN3-206ENST00000377819 HSP90AA1P07900 732 aaKnown RBP14.74□□□□□ -0.05
RTN3-206ENST00000377819 HRCP23327 699 aa14.73□□□□□ -0.05
RTN3-206ENST00000377819 BCANQ96GW7 911 aa14.72□□□□□ -0.05
RTN3-206ENST00000377819 TRIM26Q12899 539 aaPredicted RBP14.69□□□□□ -0.06
RTN3-206ENST00000377819 TRIM52Q96A61 297 aa14.65□□□□□ -0.06
RTN3-206ENST00000377819 ANP32AP39687 249 aaKnown RBP14.65□□□□□ -0.06
RTN3-206ENST00000377819 UNC13AQ9UPW8 1703 aa14.59□□□□□ -0.07
RTN3-206ENST00000377819 UPF2Q9HAU5 1272 aaKnown RBP14.59□□□□□ -0.07
RTN3-206ENST00000377819 ZNF326Q5BKZ1 582 aaKnown RBP14.58□□□□□ -0.08
RTN3-206ENST00000377819 ANP32CO43423 234 aa14.57□□□□□ -0.08
RTN3-206ENST00000377819 NACADO15069 1562 aa14.52□□□□□ -0.08
RTN3-206ENST00000377819 NPM2Q86SE8 214 aaKnown RBP14.52□□□□□ -0.09
RTN3-206ENST00000377819 DIEXFQ68CQ4 756 aaKnown RBP14.51□□□□□ -0.09
RTN3-206ENST00000377819 FAM50AQ14320 339 aaKnown RBP14.5□□□□□ -0.09
RTN3-206ENST00000377819 ESF1Q9H501 851 aaKnown RBP14.49□□□□□ -0.09
RTN3-206ENST00000377819 NEUROD1Q13562 356 aa14.44□□□□□ -0.1
RTN3-206ENST00000377819 TNNT2P45379 298 aaPredicted RBP14.41□□□□□ -0.1
RTN3-206ENST00000377819 ABCC9O60706 1549 aa14.34□□□□□ -0.11
RTN3-206ENST00000377819 A0A0G2JS52 829 aa14.33□□□□□ -0.12
RTN3-206ENST00000377819 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.33□□□□□ -0.12
RTN3-206ENST00000377819 STAG3Q9UJ98 1225 aa14.32□□□□□ -0.12
RTN3-206ENST00000377819 ZRSR1Q15695 479 aaKnown RBP14.3□□□□□ -0.12
RTN3-206ENST00000377819 NCLP19338 710 aaKnown RBP14.29□□□□□ -0.12
RTN3-206ENST00000377819 ARXQ96QS3 562 aa14.26□□□□□ -0.13
RTN3-206ENST00000377819 GTF3C3Q9Y5Q9 886 aa14.25□□□□□ -0.13
RTN3-206ENST00000377819 TULP1O00294 542 aaPredicted RBP14.25□□□□□ -0.13
RTN3-206ENST00000377819 TRIM44Q96DX7 344 aaPredicted RBP14.23□□□□□ -0.13
RTN3-206ENST00000377819 BICRAQ9NZM4 1560 aa14.22□□□□□ -0.13
RTN3-206ENST00000377819 ANP32EQ9BTT0 268 aa14.21□□□□□ -0.13
RTN3-206ENST00000377819 MYH16Q9H6N6 1097 aa14.21□□□□□ -0.13
RTN3-206ENST00000377819 NCBP3Q53F19 620 aaKnown RBP14.21□□□□□ -0.14
RTN3-206ENST00000377819 SCAF1Q9H7N4 1312 aaKnown RBP14.19□□□□□ -0.14
RTN3-206ENST00000377819 CHGAP10645 457 aaKnown RBP14.19□□□□□ -0.14
RTN3-206ENST00000377819 FBLN2P98095 1184 aa14.19□□□□□ -0.14
RTN3-206ENST00000377819 RB1CC1Q8TDY2 1594 aa14.18□□□□□ -0.14
RTN3-206ENST00000377819 GOLGA6L22H0YM25 854 aa14.18□□□□□ -0.14
RTN3-206ENST00000377819 PLPPR3Q6T4P5 718 aa14.16□□□□□ -0.14
RTN3-206ENST00000377819 PTMAP06454 111 aaKnown RBP14.14□□□□□ -0.15
RTN3-206ENST00000377819 DNTTIP2Q5QJE6 756 aaKnown RBP14.12□□□□□ -0.15
RTN3-206ENST00000377819 NRDCO43847 1150 aa14.11□□□□□ -0.15
RTN3-206ENST00000377819 CCDC136Q96JN2 1154 aa14.09□□□□□ -0.15
RTN3-206ENST00000377819 PEG3Q9GZU2 1588 aa14.08□□□□□ -0.16
RTN3-206ENST00000377819 EIF4G1Q04637 1599 aaKnown RBP14.07□□□□□ -0.16
RTN3-206ENST00000377819 BECN1Q14457 450 aa14.05□□□□□ -0.16
RTN3-206ENST00000377819 LOC105371045A0A1W2PR82 267 aa14.04□□□□□ -0.16
RTN3-206ENST00000377819 L1TD1Q5T7N2 865 aaKnown RBP14.04□□□□□ -0.16
RTN3-206ENST00000377819 NBR1Q14596 966 aa14.04□□□□□ -0.16
RTN3-206ENST00000377819 NPM1P06748 294 aaKnown RBP eCLIP14.03□□□□□ -0.16
RTN3-206ENST00000377819 SALL2Q9Y467 1007 aaPredicted RBP14.03□□□□□ -0.16
RTN3-206ENST00000377819 ZNF777Q9ULD5 760 aaPredicted RBP14.02□□□□□ -0.16
RTN3-206ENST00000377819 WDR43Q15061 677 aaKnown RBP eCLIP14.02□□□□□ -0.17
RTN3-206ENST00000377819 GOLGA6L6A8MZA4 724 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms