RNA–Protein interactions for RNA: ENST00000355451.7

NUDCD3-202, Transcript of NudC domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUDCD3, Length 8,256 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-202ENST00000355451 DCAF8L2P0C7V8 631 aa19.62■□□□□ 0.73
NUDCD3-202ENST00000355451 PELP1Q8IZL8 1130 aaKnown RBP18.83■□□□□ 0.6
NUDCD3-202ENST00000355451 FAM9AQ8IZU1 332 aaPredicted RBP18.43■□□□□ 0.54
NUDCD3-202ENST00000355451 ERICH6Q7L0X2 663 aa18.22■□□□□ 0.51
NUDCD3-202ENST00000355451 EHMT2Q96KQ7 1210 aa18.2■□□□□ 0.5
NUDCD3-202ENST00000355451 APLP2Q06481 763 aa18.1■□□□□ 0.49
NUDCD3-202ENST00000355451 CCER1Q8TC90 406 aaPredicted RBP18.01■□□□□ 0.47
NUDCD3-202ENST00000355451 SUPT5HO00267 1087 aaKnown RBP17.83■□□□□ 0.44
NUDCD3-202ENST00000355451 ATP1B4Q9UN42 357 aaPredicted RBP17.63■□□□□ 0.41
NUDCD3-202ENST00000355451 MYT1Q01538 1121 aa17.61■□□□□ 0.41
NUDCD3-202ENST00000355451 TTBK1Q5TCY1 1321 aaPredicted RBP17.57■□□□□ 0.4
NUDCD3-202ENST00000355451 MYT1LQ9UL68 1186 aa17.49■□□□□ 0.39
NUDCD3-202ENST00000355451 DAXXQ9UER7 740 aaPredicted RBP17.46■□□□□ 0.39
NUDCD3-202ENST00000355451 RANGAP1P46060 587 aaPredicted RBP17.45■□□□□ 0.38
NUDCD3-202ENST00000355451 NEFLP07196 543 aa17.37■□□□□ 0.37
NUDCD3-202ENST00000355451 CHIC1Q5VXU3 224 aa17.3■□□□□ 0.36
NUDCD3-202ENST00000355451 YTHDC1Q96MU7 727 aaKnown RBP17.19■□□□□ 0.34
NUDCD3-202ENST00000355451 CENPBP07199 599 aaPredicted RBP17.19■□□□□ 0.34
NUDCD3-202ENST00000355451 SHROOM4Q9ULL8 1493 aa17.18■□□□□ 0.34
NUDCD3-202ENST00000355451 SLC4A1APQ9BWU0 796 aaKnown RBP17.18■□□□□ 0.34
NUDCD3-202ENST00000355451 PCGF6Q9BYE7 350 aa17.13■□□□□ 0.33
NUDCD3-202ENST00000355451 POLR3GLQ9BT43 218 aa17.08■□□□□ 0.32
NUDCD3-202ENST00000355451 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.91■□□□□ 0.3
NUDCD3-202ENST00000355451 HNRNPUL2Q1KMD3 747 aaKnown RBP16.91■□□□□ 0.3
NUDCD3-202ENST00000355451 CLSPNQ9HAW4 1339 aa16.9■□□□□ 0.3
NUDCD3-202ENST00000355451 ZNF316A6NFI3 1004 aaPredicted RBP16.9■□□□□ 0.3
NUDCD3-202ENST00000355451 SLC24A1O60721 1099 aa16.87■□□□□ 0.29
NUDCD3-202ENST00000355451 CNGB1Q14028 1251 aaPredicted RBP16.87■□□□□ 0.29
NUDCD3-202ENST00000355451 UBTFP17480 764 aaKnown RBP16.75■□□□□ 0.27
NUDCD3-202ENST00000355451 ZBTB47Q9UFB7 747 aaPredicted RBP16.72■□□□□ 0.27
NUDCD3-202ENST00000355451 BCL11AQ9H165 835 aa16.63■□□□□ 0.25
NUDCD3-202ENST00000355451 RTL5Q5HYW3 569 aaPredicted RBP16.6■□□□□ 0.25
NUDCD3-202ENST00000355451 ZEB1P37275 1124 aaPredicted RBP16.56■□□□□ 0.24
NUDCD3-202ENST00000355451 BCANQ96GW7 911 aa16.55■□□□□ 0.24
NUDCD3-202ENST00000355451 ITGAEP38570 1179 aa16.5■□□□□ 0.23
NUDCD3-202ENST00000355451 TRIM41Q8WV44 630 aa16.42■□□□□ 0.22
NUDCD3-202ENST00000355451 CDK11BP21127 795 aaKnown RBP16.34■□□□□ 0.21
NUDCD3-202ENST00000355451 CDK11AQ9UQ88 783 aaPredicted RBP16.34■□□□□ 0.21
NUDCD3-202ENST00000355451 NEFMP07197 916 aa16.33■□□□□ 0.2
NUDCD3-202ENST00000355451 CANXP27824 592 aaKnown RBP16.26■□□□□ 0.19
NUDCD3-202ENST00000355451 PPARGC1BQ86YN6 1023 aaKnown RBP16.22■□□□□ 0.19
NUDCD3-202ENST00000355451 PLPPR3Q6T4P5 718 aa16.21■□□□□ 0.19
NUDCD3-202ENST00000355451 A0A0G2JS52 829 aa16.19■□□□□ 0.18
NUDCD3-202ENST00000355451 ESF1Q9H501 851 aaKnown RBP16.12■□□□□ 0.17
NUDCD3-202ENST00000355451 ANP32BQ92688 251 aaKnown RBP16.1■□□□□ 0.17
NUDCD3-202ENST00000355451 SCAF1Q9H7N4 1312 aaKnown RBP16.07■□□□□ 0.16
NUDCD3-202ENST00000355451 TULP1O00294 542 aaPredicted RBP16.04■□□□□ 0.16
NUDCD3-202ENST00000355451 NCBP3Q53F19 620 aaKnown RBP16.04■□□□□ 0.16
NUDCD3-202ENST00000355451 HSP90AA1P07900 732 aaKnown RBP16.03■□□□□ 0.16
NUDCD3-202ENST00000355451 TRIM52Q96A61 297 aa16.03■□□□□ 0.16
NUDCD3-202ENST00000355451 NISCHQ9Y2I1 1504 aa16.02■□□□□ 0.15
NUDCD3-202ENST00000355451 ZNF326Q5BKZ1 582 aaKnown RBP16.01■□□□□ 0.15
NUDCD3-202ENST00000355451 NPM2Q86SE8 214 aaKnown RBP15.95■□□□□ 0.14
NUDCD3-202ENST00000355451 STAG3Q9UJ98 1225 aa15.92■□□□□ 0.14
NUDCD3-202ENST00000355451 FAM50AQ14320 339 aaKnown RBP15.9■□□□□ 0.14
NUDCD3-202ENST00000355451 FBLN2P98095 1184 aa15.88■□□□□ 0.13
NUDCD3-202ENST00000355451 EIF5BO60841 1220 aaKnown RBP15.8■□□□□ 0.12
NUDCD3-202ENST00000355451 NEUROD1Q13562 356 aa15.77■□□□□ 0.11
NUDCD3-202ENST00000355451 PLEKHG5O94827 1062 aa15.75■□□□□ 0.11
NUDCD3-202ENST00000355451 UPF2Q9HAU5 1272 aaKnown RBP15.71■□□□□ 0.11
NUDCD3-202ENST00000355451 NPHP1O15259 732 aa15.7■□□□□ 0.1
NUDCD3-202ENST00000355451 ZBTB7CA1YPR0 619 aa15.69■□□□□ 0.1
NUDCD3-202ENST00000355451 CHGAP10645 457 aaKnown RBP15.69■□□□□ 0.1
NUDCD3-202ENST00000355451 ANP32AP39687 249 aaKnown RBP15.68■□□□□ 0.1
NUDCD3-202ENST00000355451 HAP1P54257 671 aaPredicted RBP15.68■□□□□ 0.1
NUDCD3-202ENST00000355451 GLIPR1L2Q4G1C9 344 aa15.68■□□□□ 0.1
NUDCD3-202ENST00000355451 ARXQ96QS3 562 aa15.67■□□□□ 0.1
NUDCD3-202ENST00000355451 PRM3Q9NNZ6 103 aa15.66■□□□□ 0.1
NUDCD3-202ENST00000355451 ANP32CO43423 234 aa15.66■□□□□ 0.1
NUDCD3-202ENST00000355451 CLSTN1O94985 981 aa15.63■□□□□ 0.09
NUDCD3-202ENST00000355451 KRI1Q8N9T8 703 aaKnown RBP15.62■□□□□ 0.09
NUDCD3-202ENST00000355451 C14orf37Q86TY3 774 aa15.61■□□□□ 0.09
NUDCD3-202ENST00000355451 DIEXFQ68CQ4 756 aaKnown RBP15.6■□□□□ 0.09
NUDCD3-202ENST00000355451 TRIM26Q12899 539 aaPredicted RBP15.56■□□□□ 0.08
NUDCD3-202ENST00000355451 ZRSR1Q15695 479 aaKnown RBP15.55■□□□□ 0.08
NUDCD3-202ENST00000355451 NPM1P06748 294 aaKnown RBP eCLIP15.51■□□□□ 0.07
NUDCD3-202ENST00000355451 TRIM44Q96DX7 344 aaPredicted RBP15.49■□□□□ 0.07
NUDCD3-202ENST00000355451 MYH16Q9H6N6 1097 aa15.49■□□□□ 0.07
NUDCD3-202ENST00000355451 ZNF777Q9ULD5 760 aaPredicted RBP15.47■□□□□ 0.07
NUDCD3-202ENST00000355451 HRCP23327 699 aa15.46■□□□□ 0.06
NUDCD3-202ENST00000355451 TAOK2Q9UL54 1235 aa15.46■□□□□ 0.06
NUDCD3-202ENST00000355451 ARID3CA6NKF2 412 aa15.45■□□□□ 0.06
NUDCD3-202ENST00000355451 NCLP19338 710 aaKnown RBP15.43■□□□□ 0.06
NUDCD3-202ENST00000355451 GOLGA2Q08379 1002 aa15.38■□□□□ 0.05
NUDCD3-202ENST00000355451 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.38■□□□□ 0.05
NUDCD3-202ENST00000355451 TNNT2P45379 298 aaPredicted RBP15.36■□□□□ 0.05
NUDCD3-202ENST00000355451 TPRNQ4KMQ1 711 aa15.36■□□□□ 0.05
NUDCD3-202ENST00000355451 SENP3Q9H4L4 574 aaPredicted RBP15.36■□□□□ 0.05
NUDCD3-202ENST00000355451 ISY1Q9ULR0 285 aaKnown RBP15.35■□□□□ 0.05
NUDCD3-202ENST00000355451 SALL2Q9Y467 1007 aaPredicted RBP15.32■□□□□ 0.04
NUDCD3-202ENST00000355451 DNTTIP2Q5QJE6 756 aaKnown RBP15.27■□□□□ 0.04
NUDCD3-202ENST00000355451 PPP1R15AO75807 674 aaPredicted RBP15.26■□□□□ 0.03
NUDCD3-202ENST00000355451 PTMAP06454 111 aaKnown RBP15.26■□□□□ 0.03
NUDCD3-202ENST00000355451 ARID4BQ4LE39 1312 aaPredicted RBP15.24■□□□□ 0.03
NUDCD3-202ENST00000355451 LMOD2Q6P5Q4 547 aa15.24■□□□□ 0.03
NUDCD3-202ENST00000355451 WDR43Q15061 677 aaKnown RBP eCLIP15.23■□□□□ 0.03
NUDCD3-202ENST00000355451 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.21■□□□□ 0.034e-7■■□□□ 13.5
NUDCD3-202ENST00000355451 NAP1L2Q9ULW6 460 aaPredicted RBP15.21■□□□□ 0.03
NUDCD3-202ENST00000355451 GOLGA6L6A8MZA4 724 aa15.19■□□□□ 0.02
NUDCD3-202ENST00000355451 CASC1Q6TDU7 716 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms