RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 NISCHQ9Y2I1 1504 aa24.44■■□□□ 1.5
RTN3-203ENST00000341307 CCDC180Q9P1Z9 1646 aa21.42■■□□□ 1.02
RTN3-203ENST00000341307 ABCC9O60706 1549 aa21.15■□□□□ 0.98
RTN3-203ENST00000341307 DCAF8L2P0C7V8 631 aa20.69■□□□□ 0.9
RTN3-203ENST00000341307 ZCCHC6Q5VYS8 1495 aaKnown RBP20.58■□□□□ 0.89
RTN3-203ENST00000341307 SHROOM4Q9ULL8 1493 aa20.52■□□□□ 0.88
RTN3-203ENST00000341307 PELP1Q8IZL8 1130 aaKnown RBP20.45■□□□□ 0.86
RTN3-203ENST00000341307 RB1CC1Q8TDY2 1594 aa20.17■□□□□ 0.82
RTN3-203ENST00000341307 NACADO15069 1562 aa20.16■□□□□ 0.82
RTN3-203ENST00000341307 HRCP23327 699 aa20.1■□□□□ 0.81
RTN3-203ENST00000341307 DCAF1Q9Y4B6 1507 aa20.03■□□□□ 0.8
RTN3-203ENST00000341307 MYO15BQ96JP2 1530 aa20.01■□□□□ 0.79
RTN3-203ENST00000341307 PABPN1Q86U42 306 aaKnown RBP eCLIP19.93■□□□□ 0.78
RTN3-203ENST00000341307 SUPT5HO00267 1087 aaKnown RBP19.88■□□□□ 0.77
RTN3-203ENST00000341307 MYT1Q01538 1121 aa19.86■□□□□ 0.77
RTN3-203ENST00000341307 SCRIBQ14160 1630 aa19.85■□□□□ 0.77
RTN3-203ENST00000341307 UNC13AQ9UPW8 1703 aa19.79■□□□□ 0.76
RTN3-203ENST00000341307 BICRAQ9NZM4 1560 aa19.67■□□□□ 0.74
RTN3-203ENST00000341307 PPARGC1BQ86YN6 1023 aaKnown RBP19.65■□□□□ 0.74
RTN3-203ENST00000341307 SCAF1Q9H7N4 1312 aaKnown RBP19.46■□□□□ 0.71
RTN3-203ENST00000341307 DNAJC5BQ9UF47 199 aa19.39■□□□□ 0.69
RTN3-203ENST00000341307 PCGF6Q9BYE7 350 aa19.25■□□□□ 0.67
RTN3-203ENST00000341307 CECR2Q9BXF3 1484 aa19.17■□□□□ 0.66
RTN3-203ENST00000341307 RSF1Q96T23 1441 aaPredicted RBP19.16■□□□□ 0.66
RTN3-203ENST00000341307 EIF4G1Q04637 1599 aaKnown RBP19.12■□□□□ 0.65
RTN3-203ENST00000341307 CHIC1Q5VXU3 224 aa19.08■□□□□ 0.64
RTN3-203ENST00000341307 CC2D2AQ9P2K1 1620 aa19.02■□□□□ 0.63
RTN3-203ENST00000341307 MROH2BQ7Z745 1585 aa19■□□□□ 0.63
RTN3-203ENST00000341307 TTBK1Q5TCY1 1321 aaPredicted RBP18.89■□□□□ 0.61
RTN3-203ENST00000341307 SMARCA4P51532 1647 aa18.89■□□□□ 0.61
RTN3-203ENST00000341307 WIZO95785 1651 aa18.88■□□□□ 0.61
RTN3-203ENST00000341307 BAZ1AQ9NRL2 1556 aaPredicted RBP18.85■□□□□ 0.61
RTN3-203ENST00000341307 ATAD2BQ9ULI0 1458 aa18.79■□□□□ 0.6
RTN3-203ENST00000341307 ACIN1Q9UKV3 1341 aaKnown RBP18.71■□□□□ 0.59
RTN3-203ENST00000341307 NCAPD3P42695 1498 aa18.68■□□□□ 0.58
RTN3-203ENST00000341307 SMARCA2P51531 1590 aa18.65■□□□□ 0.58
RTN3-203ENST00000341307 NEUROD1Q13562 356 aa18.63■□□□□ 0.57
RTN3-203ENST00000341307 BAZ1BQ9UIG0 1483 aaKnown RBP18.63■□□□□ 0.57
RTN3-203ENST00000341307 PEG3Q9GZU2 1588 aa18.6■□□□□ 0.57
RTN3-203ENST00000341307 GTF3C3Q9Y5Q9 886 aa18.57■□□□□ 0.56
RTN3-203ENST00000341307 BCL11AQ9H165 835 aa18.57■□□□□ 0.56
RTN3-203ENST00000341307 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
RTN3-203ENST00000341307 TRIM41Q8WV44 630 aa18.54■□□□□ 0.56
RTN3-203ENST00000341307 HMGXB3Q12766 1538 aa18.53■□□□□ 0.56
RTN3-203ENST00000341307 LOC105371045A0A1W2PR82 267 aa18.52■□□□□ 0.56
RTN3-203ENST00000341307 ZEB1P37275 1124 aaPredicted RBP18.51■□□□□ 0.55
RTN3-203ENST00000341307 CCDC88BA6NC98 1476 aa18.47■□□□□ 0.55
RTN3-203ENST00000341307 PRKCSHP14314 528 aaPredicted RBP18.45■□□□□ 0.54
RTN3-203ENST00000341307 TRIM26Q12899 539 aaPredicted RBP18.44■□□□□ 0.54
RTN3-203ENST00000341307 FAM9AQ8IZU1 332 aaPredicted RBP18.44■□□□□ 0.54
RTN3-203ENST00000341307 NESP48681 1621 aa18.39■□□□□ 0.53
RTN3-203ENST00000341307 CENPBP07199 599 aaPredicted RBP18.36■□□□□ 0.53
RTN3-203ENST00000341307 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
RTN3-203ENST00000341307 EHMT2Q96KQ7 1210 aa18.28■□□□□ 0.52
RTN3-203ENST00000341307 CADPSQ9ULU8 1353 aa18.21■□□□□ 0.51
RTN3-203ENST00000341307 ERCC6Q03468 1493 aa18.12■□□□□ 0.49
RTN3-203ENST00000341307 CFTRP13569 1480 aa18.11■□□□□ 0.49
RTN3-203ENST00000341307 LAMC3Q9Y6N6 1575 aa18.1■□□□□ 0.49
RTN3-203ENST00000341307 ANP32EQ9BTT0 268 aa18.05■□□□□ 0.48
RTN3-203ENST00000341307 PDS5BQ9NTI5 1447 aa18.03■□□□□ 0.48
RTN3-203ENST00000341307 KIF21AQ7Z4S6 1674 aa18.03■□□□□ 0.48
RTN3-203ENST00000341307 FANCD2Q9BXW9 1451 aa18.01■□□□□ 0.47
RTN3-203ENST00000341307 SOGA1O94964 1423 aa18.01■□□□□ 0.47
RTN3-203ENST00000341307 WRNQ14191 1432 aaPredicted RBP eCLIP18.01■□□□□ 0.47
RTN3-203ENST00000341307 SYNJ1O43426 1573 aa17.96■□□□□ 0.47
RTN3-203ENST00000341307 RUSC2Q8N2Y8 1516 aa17.96■□□□□ 0.47
RTN3-203ENST00000341307 DIEXFQ68CQ4 756 aaKnown RBP17.93■□□□□ 0.46
RTN3-203ENST00000341307 CEP164Q9UPV0 1460 aa17.93■□□□□ 0.46
RTN3-203ENST00000341307 CSRNP3Q8WYN3 585 aa17.91■□□□□ 0.46
RTN3-203ENST00000341307 ERICH6Q7L0X2 663 aa17.9■□□□□ 0.46
RTN3-203ENST00000341307 THOC2Q8NI27 1593 aaKnown RBP17.86■□□□□ 0.45
RTN3-203ENST00000341307 APLP2Q06481 763 aa17.86■□□□□ 0.45
RTN3-203ENST00000341307 URB2Q14146 1524 aaKnown RBP17.85■□□□□ 0.45
RTN3-203ENST00000341307 MRC2Q9UBG0 1479 aa17.84■□□□□ 0.45
RTN3-203ENST00000341307 PRDM2Q13029 1718 aa17.81■□□□□ 0.44
RTN3-203ENST00000341307 EEA1Q15075 1411 aa17.77■□□□□ 0.44
RTN3-203ENST00000341307 TOP2BQ02880 1626 aa17.76■□□□□ 0.43
RTN3-203ENST00000341307 WDR62O43379 1518 aa17.75■□□□□ 0.43
RTN3-203ENST00000341307 TOPBP1Q92547 1522 aa17.74■□□□□ 0.43
RTN3-203ENST00000341307 UBTFP17480 764 aaKnown RBP17.73■□□□□ 0.43
RTN3-203ENST00000341307 CUX1P39880 1505 aa17.71■□□□□ 0.43
RTN3-203ENST00000341307 BIVM-ERCC5R4GMW8 1640 aa17.7■□□□□ 0.42
RTN3-203ENST00000341307 CUX2O14529 1486 aa17.7■□□□□ 0.42
RTN3-203ENST00000341307 YTHDC1Q96MU7 727 aaKnown RBP17.69■□□□□ 0.42
RTN3-203ENST00000341307 CEP162Q5TB80 1403 aa17.67■□□□□ 0.42
RTN3-203ENST00000341307 TSHZ2Q9NRE2 1034 aa17.67■□□□□ 0.42
RTN3-203ENST00000341307 TNIKQ9UKE5 1360 aa17.66■□□□□ 0.42
RTN3-203ENST00000341307 GOLGA3Q08378 1498 aa17.66■□□□□ 0.42
RTN3-203ENST00000341307 RAD54L2Q9Y4B4 1467 aa17.65■□□□□ 0.42
RTN3-203ENST00000341307 DNMBPQ6XZF7 1577 aa17.65■□□□□ 0.42
RTN3-203ENST00000341307 POLA1P09884 1462 aaPredicted RBP17.63■□□□□ 0.41
RTN3-203ENST00000341307 FGD5Q6ZNL6 1462 aa17.62■□□□□ 0.41
RTN3-203ENST00000341307 ZNF608Q9ULD9 1512 aaPredicted RBP17.6■□□□□ 0.41
RTN3-203ENST00000341307 RAPGEF2Q9Y4G8 1499 aa17.59■□□□□ 0.41
RTN3-203ENST00000341307 KIF21BO75037 1637 aa17.58■□□□□ 0.41
RTN3-203ENST00000341307 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.58■□□□□ 0.4
RTN3-203ENST00000341307 TDRD9Q8NDG6 1382 aaKnown RBP17.56■□□□□ 0.4
RTN3-203ENST00000341307 RANGAP1P46060 587 aaPredicted RBP17.56■□□□□ 0.4
RTN3-203ENST00000341307 AQRO60306 1485 aaKnown RBP eCLIP17.54■□□□□ 0.42e-7■■■■□ 19.7
RTN3-203ENST00000341307 SUPT16HQ9Y5B9 1047 aaKnown RBP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms