Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.497e-7■■■■□ 25.3
RPS3P23396 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.487e-7■■■■□ 25.3
RPS3P23396 PSMB10-202ENST00000570304 851 ntTSL 217.86■□□□□ 0.457e-7■■■■□ 25.3
RPS3P23396 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.22■□□□□ 0.357e-7■■■■□ 25.3
RPS3P23396 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.332e-7■■■■□ 25.3
RPS3P23396 SIL1-215ENST00000515008 843 ntTSL 317.09■□□□□ 0.332e-7■■■■□ 25.3
RPS3P23396 BUD23-214ENST00000464615 458 ntTSL 517.05■□□□□ 0.327e-7■■■■□ 25.3
RPS3P23396 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.74■□□□□ 0.272e-7■■■■□ 25.3
RPS3P23396 VPS9D1-203ENST00000563798 459 ntTSL 316.58■□□□□ 0.247e-7■■■■□ 25.3
RPS3P23396 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.157e-7■■■■□ 25.3
RPS3P23396 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.067e-7■■■■□ 25.3
RPS3P23396 PSMB10-204ENST00000574576 539 ntTSL 315.25■□□□□ 0.037e-7■■■■□ 25.3
RPS3P23396 PSMB10-203ENST00000570985 591 ntTSL 215.23■□□□□ 0.037e-7■■■■□ 25.3
RPS3P23396 IRF3-219ENST00000597636 2874 ntTSL 514.96□□□□□ -0.017e-7■■■■□ 25.3
RPS3P23396 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.78□□□□□ -0.047e-7■■■■□ 25.3
RPS3P23396 TMEM167A-204ENST00000509770 492 ntTSL 414.66□□□□□ -0.067e-7■■■■□ 25.3
RPS3P23396 IRF3-211ENST00000596644 550 ntTSL 214.65□□□□□ -0.067e-7■■■■□ 25.3
RPS3P23396 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.147e-7■■■■□ 25.3
RPS3P23396 WDR13-210ENST00000492873 470 ntTSL 214.17□□□□□ -0.149e-10■■■■□ 25.3
RPS3P23396 AC040162.1-201ENST00000575231 5685 ntTSL 214.1□□□□□ -0.157e-7■■■■□ 25.3
RPS3P23396 PLOD1-208ENST00000485046 991 ntTSL 514.09□□□□□ -0.152e-7■■■■□ 25.3
RPS3P23396 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14□□□□□ -0.177e-7■■■■□ 25.3
RPS3P23396 IRF3-224ENST00000599680 472 ntTSL 313.86□□□□□ -0.197e-7■■■■□ 25.3
RPS3P23396 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.86□□□□□ -0.197e-7■■■■□ 25.3
RPS3P23396 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.27e-7■■■■□ 25.3
RPS3P23396 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.237e-7■■■■□ 25.3
RPS3P23396 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.247e-7■■■■□ 25.3
RPS3P23396 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.281e-12■■■■□ 25.3
RPS3P23396 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.291e-11■■■■□ 25.3
RPS3P23396 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.12□□□□□ -0.317e-7■■■■□ 25.3
RPS3P23396 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC13.09□□□□□ -0.317e-7■■■■□ 25.3
RPS3P23396 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC13.03□□□□□ -0.327e-7■■■■□ 25.3
RPS3P23396 AAMP-205ENST00000447885 671 ntTSL 512.76□□□□□ -0.377e-7■■■■□ 25.3
RPS3P23396 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.371e-11■■■■□ 25.3
RPS3P23396 TMEM167A-203ENST00000504622 596 ntTSL 212.4□□□□□ -0.427e-7■■■■□ 25.3
RPS3P23396 GGPS1-202ENST00000358966 2740 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.437e-7■■■■□ 25.3
RPS3P23396 GGPS1-203ENST00000391855 1407 ntTSL 2 BASIC12.36□□□□□ -0.437e-7■■■■□ 25.3
RPS3P23396 PLOD1-205ENST00000465920 871 ntTSL 512.08□□□□□ -0.486e-7■■■■□ 25.3
RPS3P23396 GRPEL2-201ENST00000329271 4089 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.547e-7■■■■□ 25.3
RPS3P23396 GGPS1-205ENST00000482013 470 ntTSL 411.66□□□□□ -0.547e-7■■■■□ 25.3
RPS3P23396 CCT6A-205ENST00000466572 686 ntTSL 211.53□□□□□ -0.567e-8■■■■□ 25.3
RPS3P23396 GGPS1-207ENST00000489692 506 ntTSL 311.28□□□□□ -0.67e-7■■■■□ 25.3
RPS3P23396 ZMYM3-209ENST00000489332 5723 ntTSL 511.06□□□□□ -0.647e-7■■■■□ 25.3
RPS3P23396 GRPEL2-203ENST00000507562 4109 ntTSL 310.93□□□□□ -0.667e-7■■■■□ 25.3
RPS3P23396 GGPS1-201ENST00000282841 2895 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.687e-7■■■■□ 25.3
RPS3P23396 EYA3-202ENST00000373864 2459 ntTSL 5 BASIC10.5□□□□□ -0.737e-7■■■■□ 25.3
RPS3P23396 ZMYM3-201ENST00000314425 5536 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.827e-7■■■■□ 25.3
RPS3P23396 CCT6A-207ENST00000492618 692 ntTSL 39.89□□□□□ -0.837e-8■■■■□ 25.3
RPS3P23396 USP22-202ENST00000455117 677 ntTSL 59.83□□□□□ -0.841e-11■■■■□ 25.3
RPS3P23396 ZMYM3-205ENST00000373984 5253 ntTSL 5 BASIC9.78□□□□□ -0.847e-7■■■■□ 25.3
RPS3P23396 EYA3-206ENST00000471498 1806 ntTSL 1 (best)9.66□□□□□ -0.867e-7■■■■□ 25.3
RPS3P23396 TRMT1L-204ENST00000487028 619 ntTSL 29.47□□□□□ -0.891e-12■■■■□ 25.3
RPS3P23396 CSTF1-201ENST00000217109 4290 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.97e-7■■■■□ 25.3
RPS3P23396 CSTF1-206ENST00000493039 2234 ntTSL 59.23□□□□□ -0.937e-7■■■■□ 25.3
RPS3P23396 GGPS1-204ENST00000471812 850 ntTSL 29.11□□□□□ -0.957e-7■■■■□ 25.3
RPS3P23396 EYA3-207ENST00000495923 833 ntTSL 59.03□□□□□ -0.967e-7■■■■□ 25.3
RPS3P23396 EYA3-201ENST00000373863 1729 ntTSL 1 (best) BASIC8.93□□□□□ -0.987e-7■■■■□ 25.3
RPS3P23396 TMEM167A-201ENST00000502346 4630 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -17e-7■■■■□ 25.3
RPS3P23396 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.077e-7■■■■□ 25.3
RPS3P23396 AC135048.1-202ENST00000562642 626 ntTSL 37.55□□□□□ -1.21e-11■■■■□ 25.3
RPS3P23396 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.26□□□□□ -1.257e-7■■■■□ 25.3
RPS3P23396 PRMT5-207ENST00000476175 682 ntTSL 26.87□□□□□ -1.317e-7■■■■□ 25.3
RPS3P23396 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.47□□□□□ -1.377e-7■■■■□ 25.3
RPS3P23396 NUP98-213ENST00000524563 841 ntTSL 36.32□□□□□ -1.49e-10■■■■□ 25.3
RPS3P23396 DCTN2-205ENST00000546758 817 ntTSL 55.76□□□□□ -1.497e-7■■■■□ 25.3
RPS3P23396 TMEM167A-206ENST00000511450 3353 ntTSL 55.4□□□□□ -1.557e-7■■■■□ 25.3
RPS3P23396 TMEM167A-202ENST00000503892 562 ntTSL 44.91□□□□□ -1.627e-7■■■■□ 25.3
RPS3P23396 PRMT5-227ENST00000557758 597 ntTSL 34.28□□□□□ -1.727e-7■■■■□ 25.3
RPS3P23396 F10-206ENST00000483537 564 ntTSL 29.08□□□□□ -0.961e-6■■■■□ 25.3
RPS3P23396 CA8-202ENST00000524872 1825 ntTSL 1 (best)18.39■□□□□ 0.535e-7■■■■□ 25.3
RPS3P23396 CA8-204ENST00000529918 1697 ntTSL 214.33□□□□□ -0.125e-7■■■■□ 25.3
RPS3P23396 CA8-201ENST00000317995 3812 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.825e-7■■■■□ 25.3
RPS3P23396 C16orf58-206ENST00000566148 441 ntTSL 213.3□□□□□ -0.289e-24■■■■□ 25.3
RPS3P23396 SRI-209ENST00000489079 557 ntTSL 39.33□□□□□ -0.924e-6■■■■□ 25.3
RPS3P23396 SRI-208ENST00000488015 588 ntTSL 24.01□□□□□ -1.774e-6■■■■□ 25.3
RPS3P23396 TM4SF1-204ENST00000493348 976 ntTSL 27.97□□□□□ -1.135e-14■■■■□ 25.3
RPS3P23396 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.25e-14■■■■□ 25.3
RPS3P23396 CDCA5-208ENST00000529290 789 ntTSL 516.53■□□□□ 0.243e-7■■■■□ 25.3
RPS3P23396 CDCA5-205ENST00000524733 835 ntTSL 316.4■□□□□ 0.223e-7■■■■□ 25.3
RPS3P23396 CDCA5-210ENST00000533015 563 ntTSL 211.4□□□□□ -0.583e-7■■■■□ 25.3
RPS3P23396 AKR1C1-203ENST00000442997 744 ntTSL 310.21□□□□□ -0.771e-7■■■■□ 25.3
RPS3P23396 CDCA5-206ENST00000525464 672 ntTSL 510.18□□□□□ -0.783e-7■■■■□ 25.3
RPS3P23396 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.152e-7■■■■□ 25.3
RPS3P23396 AKR1C1-205ENST00000477661 2637 ntTSL 57.3□□□□□ -1.242e-7■■■■□ 25.3
RPS3P23396 PMPCA-205ENST00000462616 3341 ntTSL 212.66□□□□□ -0.383e-8■■■■□ 25.3
RPS3P23396 APEX1-203ENST00000438886 451 ntTSL 38.39□□□□□ -1.073e-7■■■■□ 25.3
RPS3P23396 PSMB6-203ENST00000575079 583 ntTSL 213.04□□□□□ -0.323e-7■■■■□ 25.3
RPS3P23396 LMAN2L-206ENST00000446780 1400 ntTSL 214.92□□□□□ -0.022e-6■■■■□ 25.3
RPS3P23396 LMAN2L-204ENST00000434865 1163 ntTSL 214.65□□□□□ -0.062e-6■■■■□ 25.3
RPS3P23396 LMAN2L-207ENST00000449221 1061 ntTSL 214.21□□□□□ -0.132e-6■■■■□ 25.3
RPS3P23396 LMAN2L-205ENST00000440610 1008 ntTSL 214.21□□□□□ -0.132e-6■■■■□ 25.3
RPS3P23396 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.142e-6■■■■□ 25.3
RPS3P23396 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.172e-6■■■■□ 25.3
RPS3P23396 LMAN2L-203ENST00000434524 2410 ntTSL 512.51□□□□□ -0.412e-6■■■■□ 25.3
RPS3P23396 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 02e-6■■■■□ 25.3
RPS3P23396 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.12e-6■■■■□ 25.3
RPS3P23396 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC12.18□□□□□ -0.462e-6■■■■□ 25.3
RPS3P23396 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.9■□□□□ 0.784e-6■■■■□ 25.3
RPS3P23396 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.414e-6■■■■□ 25.3
RPS3P23396 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.55■□□□□ 0.084e-6■■■■□ 25.3
Retrieved 100 of 24,271 protein–RNA pairs in 213.9 ms