RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 NISCHQ9Y2I1 1504 aa27.81■■■□□ 2.04
VPS9D1-202ENST00000561976 SHROOM4Q9ULL8 1493 aa24.18■■□□□ 1.46
VPS9D1-202ENST00000561976 SUPT5HO00267 1087 aaKnown RBP23.91■■□□□ 1.42
VPS9D1-202ENST00000561976 ZCCHC6Q5VYS8 1495 aaKnown RBP23.57■■□□□ 1.36
VPS9D1-202ENST00000561976 CCDC180Q9P1Z9 1646 aa23.39■■□□□ 1.33
VPS9D1-202ENST00000561976 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
VPS9D1-202ENST00000561976 MYO15BQ96JP2 1530 aa23.27■■□□□ 1.32
VPS9D1-202ENST00000561976 DCAF8L2P0C7V8 631 aa23.25■■□□□ 1.31
VPS9D1-202ENST00000561976 HRCP23327 699 aa23.22■■□□□ 1.31
VPS9D1-202ENST00000561976 PCGF6Q9BYE7 350 aa23.04■■□□□ 1.28
VPS9D1-202ENST00000561976 PPARGC1BQ86YN6 1023 aaKnown RBP22.74■■□□□ 1.23
VPS9D1-202ENST00000561976 DCAF1Q9Y4B6 1507 aa22.72■■□□□ 1.23
VPS9D1-202ENST00000561976 LOC105371045A0A1W2PR82 267 aa22.7■■□□□ 1.22
VPS9D1-202ENST00000561976 TRIM26Q12899 539 aaPredicted RBP22.46■■□□□ 1.19
VPS9D1-202ENST00000561976 ABCC9O60706 1549 aa22.3■■□□□ 1.16
VPS9D1-202ENST00000561976 TRIM41Q8WV44 630 aa22.2■■□□□ 1.14
VPS9D1-202ENST00000561976 RSF1Q96T23 1441 aaPredicted RBP22.18■■□□□ 1.14
VPS9D1-202ENST00000561976 ZEB1P37275 1124 aaPredicted RBP22.13■■□□□ 1.13
VPS9D1-202ENST00000561976 SCRIBQ14160 1630 aa22.13■■□□□ 1.13
VPS9D1-202ENST00000561976 FAM9AQ8IZU1 332 aaPredicted RBP22.1■■□□□ 1.13
VPS9D1-202ENST00000561976 RB1CC1Q8TDY2 1594 aa22■■□□□ 1.11
VPS9D1-202ENST00000561976 EHMT2Q96KQ7 1210 aa21.98■■□□□ 1.11
VPS9D1-202ENST00000561976 CECR2Q9BXF3 1484 aa21.72■■□□□ 1.07
VPS9D1-202ENST00000561976 MROH2BQ7Z745 1585 aa21.67■■□□□ 1.06
VPS9D1-202ENST00000561976 SCAF1Q9H7N4 1312 aaKnown RBP21.63■■□□□ 1.05
VPS9D1-202ENST00000561976 PELP1Q8IZL8 1130 aaKnown RBP21.62■■□□□ 1.05
VPS9D1-202ENST00000561976 NACADO15069 1562 aa21.6■■□□□ 1.05
VPS9D1-202ENST00000561976 WIZO95785 1651 aa21.58■■□□□ 1.04
VPS9D1-202ENST00000561976 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.55■■□□□ 1.04
VPS9D1-202ENST00000561976 CCER1Q8TC90 406 aaPredicted RBP21.53■■□□□ 1.04
VPS9D1-202ENST00000561976 BAZ1AQ9NRL2 1556 aaPredicted RBP21.42■■□□□ 1.02
VPS9D1-202ENST00000561976 TTBK1Q5TCY1 1321 aaPredicted RBP21.35■■□□□ 1.01
VPS9D1-202ENST00000561976 EIF4G1Q04637 1599 aaKnown RBP21.33■■□□□ 1.01
VPS9D1-202ENST00000561976 ACIN1Q9UKV3 1341 aaKnown RBP21.31■■□□□ 1
VPS9D1-202ENST00000561976 DIEXFQ68CQ4 756 aaKnown RBP21.28■■□□□ 1
VPS9D1-202ENST00000561976 ABCC8Q09428 1581 aa21.26■□□□□ 0.99
VPS9D1-202ENST00000561976 NEUROD1Q13562 356 aa21.26■□□□□ 0.99
VPS9D1-202ENST00000561976 CCDC88BA6NC98 1476 aa21.24■□□□□ 0.99
VPS9D1-202ENST00000561976 WRNQ14191 1432 aaPredicted RBP eCLIP21.22■□□□□ 0.99
VPS9D1-202ENST00000561976 CEP162Q5TB80 1403 aa21.22■□□□□ 0.99
VPS9D1-202ENST00000561976 TOP2AP11388 1531 aaKnown RBP21.2■□□□□ 0.98
VPS9D1-202ENST00000561976 CENPBP07199 599 aaPredicted RBP21.19■□□□□ 0.98
VPS9D1-202ENST00000561976 SOGA1O94964 1423 aa21.15■□□□□ 0.98
VPS9D1-202ENST00000561976 UBTFP17480 764 aaKnown RBP21.14■□□□□ 0.97
VPS9D1-202ENST00000561976 TNIKQ9UKE5 1360 aa21.13■□□□□ 0.97
VPS9D1-202ENST00000561976 GTF3C3Q9Y5Q9 886 aa21.12■□□□□ 0.97
VPS9D1-202ENST00000561976 SMARCA2P51531 1590 aa21.1■□□□□ 0.97
VPS9D1-202ENST00000561976 SMARCA4P51532 1647 aa21.1■□□□□ 0.97
VPS9D1-202ENST00000561976 CSRNP3Q8WYN3 585 aa21.09■□□□□ 0.97
VPS9D1-202ENST00000561976 EEA1Q15075 1411 aa21.04■□□□□ 0.96
VPS9D1-202ENST00000561976 RUSC2Q8N2Y8 1516 aa21.02■□□□□ 0.95
VPS9D1-202ENST00000561976 ZNF316A6NFI3 1004 aaPredicted RBP21.01■□□□□ 0.95
VPS9D1-202ENST00000561976 GOLGA3Q08378 1498 aa20.95■□□□□ 0.94
VPS9D1-202ENST00000561976 HNRNPUL2Q1KMD3 747 aaKnown RBP20.89■□□□□ 0.93
VPS9D1-202ENST00000561976 YTHDC1Q96MU7 727 aaKnown RBP20.88■□□□□ 0.93
VPS9D1-202ENST00000561976 UNC13AQ9UPW8 1703 aa20.84■□□□□ 0.93
VPS9D1-202ENST00000561976 CEP164Q9UPV0 1460 aa20.79■□□□□ 0.92
VPS9D1-202ENST00000561976 PABPN1Q86U42 306 aaKnown RBP eCLIP20.77■□□□□ 0.921e-6■■■■□ 24.3
VPS9D1-202ENST00000561976 CLIP1P30622 1438 aa20.76■□□□□ 0.91
VPS9D1-202ENST00000561976 APLP2Q06481 763 aa20.76■□□□□ 0.91
VPS9D1-202ENST00000561976 MIER1Q8N108 512 aa20.76■□□□□ 0.91
VPS9D1-202ENST00000561976 KIF21BO75037 1637 aa20.7■□□□□ 0.9
VPS9D1-202ENST00000561976 RANGAP1P46060 587 aaPredicted RBP20.7■□□□□ 0.9
VPS9D1-202ENST00000561976 SYNJ1O43426 1573 aa20.69■□□□□ 0.9
VPS9D1-202ENST00000561976 MYT1Q01538 1121 aa20.69■□□□□ 0.9
VPS9D1-202ENST00000561976 VPS8Q8N3P4 1428 aa20.68■□□□□ 0.9
VPS9D1-202ENST00000561976 RAPGEF2Q9Y4G8 1499 aa20.6■□□□□ 0.89
VPS9D1-202ENST00000561976 PEG3Q9GZU2 1588 aa20.6■□□□□ 0.89
VPS9D1-202ENST00000561976 BAZ1BQ9UIG0 1483 aaKnown RBP20.59■□□□□ 0.89
VPS9D1-202ENST00000561976 BICRAQ9NZM4 1560 aa20.58■□□□□ 0.89
VPS9D1-202ENST00000561976 ATAD2BQ9ULI0 1458 aa20.5■□□□□ 0.87
VPS9D1-202ENST00000561976 CLSPNQ9HAW4 1339 aa20.43■□□□□ 0.86
VPS9D1-202ENST00000561976 DHX57Q6P158 1386 aaKnown RBP20.41■□□□□ 0.86
VPS9D1-202ENST00000561976 TOP2BQ02880 1626 aa20.38■□□□□ 0.85
VPS9D1-202ENST00000561976 KANK4Q5T7N3 995 aaPredicted RBP20.35■□□□□ 0.85
VPS9D1-202ENST00000561976 ARAP1Q96P48 1450 aa20.33■□□□□ 0.84
VPS9D1-202ENST00000561976 ERICH3Q5RHP9 1530 aa20.31■□□□□ 0.84
VPS9D1-202ENST00000561976 PRXQ9BXM0 1461 aa20.3■□□□□ 0.84
VPS9D1-202ENST00000561976 BIVM-ERCC5R4GMW8 1640 aa20.27■□□□□ 0.84
VPS9D1-202ENST00000561976 ITGAEP38570 1179 aa20.23■□□□□ 0.83
VPS9D1-202ENST00000561976 RRBP1Q9P2E9 1410 aaKnown RBP20.22■□□□□ 0.83
VPS9D1-202ENST00000561976 SUPT16HQ9Y5B9 1047 aaKnown RBP20.22■□□□□ 0.83
VPS9D1-202ENST00000561976 KIF27Q86VH2 1401 aa20.19■□□□□ 0.82
VPS9D1-202ENST00000561976 CCNB3Q8WWL7 1395 aa20.19■□□□□ 0.82
VPS9D1-202ENST00000561976 CUX1P39880 1505 aa20.14■□□□□ 0.81
VPS9D1-202ENST00000561976 CUX2O14529 1486 aa20.12■□□□□ 0.81
VPS9D1-202ENST00000561976 ARHGAP35Q9NRY4 1499 aa20.1■□□□□ 0.81
VPS9D1-202ENST00000561976 RAB3GAP2Q9H2M9 1393 aa20.06■□□□□ 0.8
VPS9D1-202ENST00000561976 KCNH8Q96L42 1107 aa20.02■□□□□ 0.8
VPS9D1-202ENST00000561976 NCAPD3P42695 1498 aa20■□□□□ 0.79
VPS9D1-202ENST00000561976 HMGXB3Q12766 1538 aa20■□□□□ 0.79
VPS9D1-202ENST00000561976 TSHZ2Q9NRE2 1034 aa19.98■□□□□ 0.79
VPS9D1-202ENST00000561976 MAPKBP1O60336 1514 aa19.97■□□□□ 0.79
VPS9D1-202ENST00000561976 CFTRP13569 1480 aa19.96■□□□□ 0.79
VPS9D1-202ENST00000561976 SETD5Q9C0A6 1442 aa19.95■□□□□ 0.78
VPS9D1-202ENST00000561976 FAM50AQ14320 339 aaKnown RBP19.95■□□□□ 0.78
VPS9D1-202ENST00000561976 DDX10Q13206 875 aaKnown RBP19.94■□□□□ 0.78
VPS9D1-202ENST00000561976 TIAM1Q13009 1591 aa19.94■□□□□ 0.78
VPS9D1-202ENST00000561976 SIN3AQ96ST3 1273 aa19.92■□□□□ 0.78
VPS9D1-202ENST00000561976 IGF1RP08069 1367 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms