RNA–Protein interactions for RNA: ENST00000489692.1

GGPS1-207, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

TSL 3

Gene GGPS1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-207ENST00000489692 NISCHQ9Y2I1 1504 aa28.54■■■□□ 2.16
GGPS1-207ENST00000489692 ABCC9O60706 1549 aa25.43■■□□□ 1.66
GGPS1-207ENST00000489692 CCDC180Q9P1Z9 1646 aa25.38■■□□□ 1.65
GGPS1-207ENST00000489692 DCAF8L2P0C7V8 631 aa24.34■■□□□ 1.49
GGPS1-207ENST00000489692 RB1CC1Q8TDY2 1594 aa24.19■■□□□ 1.46
GGPS1-207ENST00000489692 NACADO15069 1562 aa24.05■■□□□ 1.44
GGPS1-207ENST00000489692 PABPN1Q86U42 306 aaKnown RBP eCLIP23.81■■□□□ 1.4
GGPS1-207ENST00000489692 MYO15BQ96JP2 1530 aa23.74■■□□□ 1.39
GGPS1-207ENST00000489692 ZCCHC6Q5VYS8 1495 aaKnown RBP23.68■■□□□ 1.38
GGPS1-207ENST00000489692 DNAJC5BQ9UF47 199 aa23.64■■□□□ 1.37
GGPS1-207ENST00000489692 DCAF1Q9Y4B6 1507 aa23.52■■□□□ 1.36
GGPS1-207ENST00000489692 UNC13AQ9UPW8 1703 aa23.42■■□□□ 1.34
GGPS1-207ENST00000489692 BICRAQ9NZM4 1560 aa23.39■■□□□ 1.33
GGPS1-207ENST00000489692 SCRIBQ14160 1630 aa23.32■■□□□ 1.32
GGPS1-207ENST00000489692 SHROOM4Q9ULL8 1493 aa23.13■■□□□ 1.29
GGPS1-207ENST00000489692 EIF4G1Q04637 1599 aaKnown RBP22.87■■□□□ 1.25
GGPS1-207ENST00000489692 CC2D2AQ9P2K1 1620 aa22.86■■□□□ 1.25
GGPS1-207ENST00000489692 CECR2Q9BXF3 1484 aa22.86■■□□□ 1.25
GGPS1-207ENST00000489692 NCAPD3P42695 1498 aa22.23■■□□□ 1.15
GGPS1-207ENST00000489692 ATAD2BQ9ULI0 1458 aa22.22■■□□□ 1.15
GGPS1-207ENST00000489692 SMARCA4P51532 1647 aa22.18■■□□□ 1.14
GGPS1-207ENST00000489692 SMARCA2P51531 1590 aa22.16■■□□□ 1.14
GGPS1-207ENST00000489692 BAZ1AQ9NRL2 1556 aaPredicted RBP22.16■■□□□ 1.14
GGPS1-207ENST00000489692 BAZ1BQ9UIG0 1483 aaKnown RBP22.07■■□□□ 1.12
GGPS1-207ENST00000489692 HMGXB3Q12766 1538 aa22.04■■□□□ 1.12
GGPS1-207ENST00000489692 MROH2BQ7Z745 1585 aa22.01■■□□□ 1.11
GGPS1-207ENST00000489692 ERCC6Q03468 1493 aa22■■□□□ 1.11
GGPS1-207ENST00000489692 PEG3Q9GZU2 1588 aa21.91■■□□□ 1.1
GGPS1-207ENST00000489692 NESP48681 1621 aa21.85■■□□□ 1.09
GGPS1-207ENST00000489692 CUX2O14529 1486 aa21.76■■□□□ 1.07
GGPS1-207ENST00000489692 WIZO95785 1651 aa21.71■■□□□ 1.07
GGPS1-207ENST00000489692 RSF1Q96T23 1441 aaPredicted RBP21.68■■□□□ 1.06
GGPS1-207ENST00000489692 LAMC3Q9Y6N6 1575 aa21.66■■□□□ 1.06
GGPS1-207ENST00000489692 PDS5BQ9NTI5 1447 aa21.66■■□□□ 1.06
GGPS1-207ENST00000489692 CADPSQ9ULU8 1353 aa21.64■■□□□ 1.06
GGPS1-207ENST00000489692 DNAJC5Q9H3Z4 198 aa21.57■■□□□ 1.04
GGPS1-207ENST00000489692 TOP2AP11388 1531 aaKnown RBP21.49■■□□□ 1.03
GGPS1-207ENST00000489692 THOC2Q8NI27 1593 aaKnown RBP21.47■■□□□ 1.03
GGPS1-207ENST00000489692 KIF21AQ7Z4S6 1674 aa21.44■■□□□ 1.02
GGPS1-207ENST00000489692 MRC2Q9UBG0 1479 aa21.41■■□□□ 1.02
GGPS1-207ENST00000489692 CEP164Q9UPV0 1460 aa21.39■■□□□ 1.02
GGPS1-207ENST00000489692 FANCD2Q9BXW9 1451 aa21.39■■□□□ 1.01
GGPS1-207ENST00000489692 CFTRP13569 1480 aa21.38■■□□□ 1.01
GGPS1-207ENST00000489692 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
GGPS1-207ENST00000489692 WDR62O43379 1518 aa21.28■■□□□ 1
GGPS1-207ENST00000489692 URB2Q14146 1524 aaKnown RBP21.15■□□□□ 0.98
GGPS1-207ENST00000489692 SUPT5HO00267 1087 aaKnown RBP21.11■□□□□ 0.97
GGPS1-207ENST00000489692 TOPBP1Q92547 1522 aa20.97■□□□□ 0.95
GGPS1-207ENST00000489692 IFT140Q96RY7 1462 aa20.95■□□□□ 0.94
GGPS1-207ENST00000489692 PRDM2Q13029 1718 aa20.95■□□□□ 0.94
GGPS1-207ENST00000489692 ABCC8Q09428 1581 aa20.94■□□□□ 0.94
GGPS1-207ENST00000489692 OSCARQ8IYS5 282 aa20.94■□□□□ 0.94
GGPS1-207ENST00000489692 ZNF608Q9ULD9 1512 aaPredicted RBP20.88■□□□□ 0.93
GGPS1-207ENST00000489692 TRIM41Q8WV44 630 aa20.88■□□□□ 0.93
GGPS1-207ENST00000489692 DNMBPQ6XZF7 1577 aa20.88■□□□□ 0.93
GGPS1-207ENST00000489692 AQRO60306 1485 aaKnown RBP eCLIP20.77■□□□□ 0.92
GGPS1-207ENST00000489692 POLA1P09884 1462 aaPredicted RBP20.77■□□□□ 0.92
GGPS1-207ENST00000489692 FBLN2P98095 1184 aa20.76■□□□□ 0.91
GGPS1-207ENST00000489692 SOGA1O94964 1423 aa20.76■□□□□ 0.91
GGPS1-207ENST00000489692 RAD54L2Q9Y4B4 1467 aa20.75■□□□□ 0.91
GGPS1-207ENST00000489692 TDRD9Q8NDG6 1382 aaKnown RBP20.72■□□□□ 0.91
GGPS1-207ENST00000489692 EIF4G3O43432 1585 aaKnown RBP20.71■□□□□ 0.91
GGPS1-207ENST00000489692 FGD5Q6ZNL6 1462 aa20.69■□□□□ 0.9
GGPS1-207ENST00000489692 CUX1P39880 1505 aa20.67■□□□□ 0.9
GGPS1-207ENST00000489692 TARBP1Q13395 1621 aaKnown RBP20.67■□□□□ 0.9
GGPS1-207ENST00000489692 CHMP7Q8WUX9 453 aaPredicted RBP20.59■□□□□ 0.89
GGPS1-207ENST00000489692 SNAPC4Q5SXM2 1469 aa20.55■□□□□ 0.88
GGPS1-207ENST00000489692 GRIN2BQ13224 1484 aa20.52■□□□□ 0.88
GGPS1-207ENST00000489692 WRNQ14191 1432 aaPredicted RBP eCLIP20.49■□□□□ 0.87
GGPS1-207ENST00000489692 GAPVD1Q14C86 1478 aa20.48■□□□□ 0.87
GGPS1-207ENST00000489692 CYB5RLQ6IPT4 315 aa20.47■□□□□ 0.87
GGPS1-207ENST00000489692 ARHGEF11O15085 1522 aa20.47■□□□□ 0.87
GGPS1-207ENST00000489692 WDR97A6NE52 1622 aa20.46■□□□□ 0.87
GGPS1-207ENST00000489692 RIMBP3CA6NJZ7 1639 aa20.46■□□□□ 0.87
GGPS1-207ENST00000489692 RIMBP3BA6NNM3 1639 aa20.46■□□□□ 0.87
GGPS1-207ENST00000489692 RIMBP3Q9UFD9 1639 aa20.46■□□□□ 0.87
GGPS1-207ENST00000489692 MAGI1Q96QZ7 1491 aaPredicted RBP20.46■□□□□ 0.87
GGPS1-207ENST00000489692 CHD1O14646 1710 aa20.44■□□□□ 0.86
GGPS1-207ENST00000489692 ABCA10Q8WWZ4 1543 aa20.44■□□□□ 0.86
GGPS1-207ENST00000489692 SYNJ2O15056 1496 aa20.41■□□□□ 0.86
GGPS1-207ENST00000489692 SYNJ1O43426 1573 aa20.36■□□□□ 0.85
GGPS1-207ENST00000489692 TOP2BQ02880 1626 aa20.35■□□□□ 0.85
GGPS1-207ENST00000489692 ABCA5Q8WWZ7 1642 aa20.31■□□□□ 0.84
GGPS1-207ENST00000489692 BIVM-ERCC5R4GMW8 1640 aa20.3■□□□□ 0.84
GGPS1-207ENST00000489692 ARAP1Q96P48 1450 aa20.29■□□□□ 0.84
GGPS1-207ENST00000489692 PBRM1Q86U86 1689 aa20.29■□□□□ 0.84
GGPS1-207ENST00000489692 CLASP1Q7Z460 1538 aa20.27■□□□□ 0.83
GGPS1-207ENST00000489692 TRHP20396 242 aaPredicted RBP20.25■□□□□ 0.83
GGPS1-207ENST00000489692 FHAD1B1AJZ9 1412 aa20.24■□□□□ 0.83
GGPS1-207ENST00000489692 GRIN2AQ12879 1464 aa20.23■□□□□ 0.83
GGPS1-207ENST00000489692 ADAMTS12P58397 1594 aa20.18■□□□□ 0.82
GGPS1-207ENST00000489692 ERICH3Q5RHP9 1530 aa20.17■□□□□ 0.82
GGPS1-207ENST00000489692 NUP160Q12769 1436 aa20.12■□□□□ 0.81
GGPS1-207ENST00000489692 KIF27Q86VH2 1401 aa20.1■□□□□ 0.81
GGPS1-207ENST00000489692 CEP170Q5SW79 1584 aa20.09■□□□□ 0.81
GGPS1-207ENST00000489692 JPH4Q96JJ6 628 aa20.05■□□□□ 0.8
GGPS1-207ENST00000489692 IGF1RP08069 1367 aa20.05■□□□□ 0.8
GGPS1-207ENST00000489692 PRG4Q92954 1404 aaPredicted RBP20.01■□□□□ 0.79
GGPS1-207ENST00000489692 ERCC6L2Q5T890 1561 aa20■□□□□ 0.79
GGPS1-207ENST00000489692 CARMIL1Q5VZK9 1371 aa19.95■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms