RNA–Protein interactions for RNA: ENST00000391855.2

GGPS1-203, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

TSL 2 BASIC

Gene GGPS1, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-203ENST00000391855 NISCHQ9Y2I1 1504 aa30.97■■■□□ 2.55
GGPS1-203ENST00000391855 CCDC180Q9P1Z9 1646 aa27.65■■■□□ 2.02
GGPS1-203ENST00000391855 ABCC9O60706 1549 aa27.02■■□□□ 1.92
GGPS1-203ENST00000391855 AEBP2Q6ZN18 517 aaPredicted RBP26.08■■□□□ 1.77
GGPS1-203ENST00000391855 RB1CC1Q8TDY2 1594 aa26.04■■□□□ 1.76
GGPS1-203ENST00000391855 NACADO15069 1562 aa26■■□□□ 1.75
GGPS1-203ENST00000391855 MYO15BQ96JP2 1530 aa25.85■■□□□ 1.73
GGPS1-203ENST00000391855 ZCCHC6Q5VYS8 1495 aaKnown RBP25.8■■□□□ 1.72
GGPS1-203ENST00000391855 DCAF8L2P0C7V8 631 aa25.79■■□□□ 1.72
GGPS1-203ENST00000391855 DCAF1Q9Y4B6 1507 aa25.69■■□□□ 1.7
GGPS1-203ENST00000391855 UNC13AQ9UPW8 1703 aa25.38■■□□□ 1.65
GGPS1-203ENST00000391855 CHIC1Q5VXU3 224 aa25.37■■□□□ 1.65
GGPS1-203ENST00000391855 BICRAQ9NZM4 1560 aa25.19■■□□□ 1.62
GGPS1-203ENST00000391855 PABPN1Q86U42 306 aaKnown RBP eCLIP25.17■■□□□ 1.62
GGPS1-203ENST00000391855 SCRIBQ14160 1630 aa25.12■■□□□ 1.61
GGPS1-203ENST00000391855 SHROOM4Q9ULL8 1493 aa25.07■■□□□ 1.6
GGPS1-203ENST00000391855 DNAJC5BQ9UF47 199 aa24.78■■□□□ 1.56
GGPS1-203ENST00000391855 EIF4G1Q04637 1599 aaKnown RBP24.57■■□□□ 1.52
GGPS1-203ENST00000391855 CC2D2AQ9P2K1 1620 aa24.47■■□□□ 1.51
GGPS1-203ENST00000391855 CECR2Q9BXF3 1484 aa24.32■■□□□ 1.48
GGPS1-203ENST00000391855 SMARCA4P51532 1647 aa24.06■■□□□ 1.44
GGPS1-203ENST00000391855 BAZ1AQ9NRL2 1556 aaPredicted RBP24.05■■□□□ 1.44
GGPS1-203ENST00000391855 NCAPD3P42695 1498 aa23.96■■□□□ 1.43
GGPS1-203ENST00000391855 SMARCA2P51531 1590 aa23.96■■□□□ 1.43
GGPS1-203ENST00000391855 ATAD2BQ9ULI0 1458 aa23.94■■□□□ 1.42
GGPS1-203ENST00000391855 HMGXB3Q12766 1538 aa23.87■■□□□ 1.41
GGPS1-203ENST00000391855 PEG3Q9GZU2 1588 aa23.86■■□□□ 1.41
GGPS1-203ENST00000391855 MROH2BQ7Z745 1585 aa23.82■■□□□ 1.4
GGPS1-203ENST00000391855 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
GGPS1-203ENST00000391855 WIZO95785 1651 aa23.54■■□□□ 1.36
GGPS1-203ENST00000391855 RSF1Q96T23 1441 aaPredicted RBP23.53■■□□□ 1.36
GGPS1-203ENST00000391855 LAMC3Q9Y6N6 1575 aa23.37■■□□□ 1.33
GGPS1-203ENST00000391855 TOP2AP11388 1531 aaKnown RBP23.37■■□□□ 1.33
GGPS1-203ENST00000391855 ERCC6Q03468 1493 aa23.34■■□□□ 1.33
GGPS1-203ENST00000391855 NESP48681 1621 aa23.33■■□□□ 1.33
GGPS1-203ENST00000391855 CADPSQ9ULU8 1353 aa23.24■■□□□ 1.31
GGPS1-203ENST00000391855 PDS5BQ9NTI5 1447 aa23.21■■□□□ 1.31
GGPS1-203ENST00000391855 CUX2O14529 1486 aa23.18■■□□□ 1.3
GGPS1-203ENST00000391855 KIF21AQ7Z4S6 1674 aa23.1■■□□□ 1.29
GGPS1-203ENST00000391855 CFTRP13569 1480 aa23.09■■□□□ 1.29
GGPS1-203ENST00000391855 THOC2Q8NI27 1593 aaKnown RBP23.08■■□□□ 1.28
GGPS1-203ENST00000391855 CCDC88BA6NC98 1476 aa23.02■■□□□ 1.28
GGPS1-203ENST00000391855 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
GGPS1-203ENST00000391855 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
GGPS1-203ENST00000391855 MRC2Q9UBG0 1479 aa22.97■■□□□ 1.27
GGPS1-203ENST00000391855 PRDM2Q13029 1718 aa22.95■■□□□ 1.26
GGPS1-203ENST00000391855 WDR62O43379 1518 aa22.9■■□□□ 1.26
GGPS1-203ENST00000391855 SUPT5HO00267 1087 aaKnown RBP22.77■■□□□ 1.24
GGPS1-203ENST00000391855 URB2Q14146 1524 aaKnown RBP22.73■■□□□ 1.23
GGPS1-203ENST00000391855 ABCC8Q09428 1581 aa22.66■■□□□ 1.22
GGPS1-203ENST00000391855 TOPBP1Q92547 1522 aa22.59■■□□□ 1.21
GGPS1-203ENST00000391855 DNMBPQ6XZF7 1577 aa22.59■■□□□ 1.21
GGPS1-203ENST00000391855 IFT140Q96RY7 1462 aa22.51■■□□□ 1.19
GGPS1-203ENST00000391855 DNAJC5Q9H3Z4 198 aa22.49■■□□□ 1.19
GGPS1-203ENST00000391855 POLA1P09884 1462 aaPredicted RBP22.39■■□□□ 1.17
GGPS1-203ENST00000391855 CUX1P39880 1505 aa22.37■■□□□ 1.17
GGPS1-203ENST00000391855 TARBP1Q13395 1621 aaKnown RBP22.35■■□□□ 1.17
GGPS1-203ENST00000391855 ZNF608Q9ULD9 1512 aaPredicted RBP22.33■■□□□ 1.17
GGPS1-203ENST00000391855 FGD5Q6ZNL6 1462 aa22.33■■□□□ 1.16
GGPS1-203ENST00000391855 EIF4G3O43432 1585 aaKnown RBP22.3■■□□□ 1.16
GGPS1-203ENST00000391855 WDR97A6NE52 1622 aa22.28■■□□□ 1.16
GGPS1-203ENST00000391855 SOGA1O94964 1423 aa22.28■■□□□ 1.16
GGPS1-203ENST00000391855 PHF23Q9BUL5 403 aaPredicted RBP22.26■■□□□ 1.15
GGPS1-203ENST00000391855 RAD54L2Q9Y4B4 1467 aa22.24■■□□□ 1.15
GGPS1-203ENST00000391855 SENP3Q9H4L4 574 aaPredicted RBP22.22■■□□□ 1.15
GGPS1-203ENST00000391855 WRNQ14191 1432 aaPredicted RBP eCLIP22.22■■□□□ 1.15
GGPS1-203ENST00000391855 BIVM-ERCC5R4GMW8 1640 aa22.2■■□□□ 1.14
GGPS1-203ENST00000391855 AQRO60306 1485 aaKnown RBP eCLIP22.19■■□□□ 1.14
GGPS1-203ENST00000391855 TOP2BQ02880 1626 aa22.18■■□□□ 1.14
GGPS1-203ENST00000391855 OSCARQ8IYS5 282 aa22.14■■□□□ 1.13
GGPS1-203ENST00000391855 SYNJ1O43426 1573 aa22.13■■□□□ 1.13
GGPS1-203ENST00000391855 ABCA10Q8WWZ4 1543 aa22.13■■□□□ 1.13
GGPS1-203ENST00000391855 TDRD9Q8NDG6 1382 aaKnown RBP22.13■■□□□ 1.13
GGPS1-203ENST00000391855 GRIN2BQ13224 1484 aa22.08■■□□□ 1.13
GGPS1-203ENST00000391855 GAPVD1Q14C86 1478 aa22.05■■□□□ 1.12
GGPS1-203ENST00000391855 MAGI1Q96QZ7 1491 aaPredicted RBP22.05■■□□□ 1.12
GGPS1-203ENST00000391855 ABCA5Q8WWZ7 1642 aa22.04■■□□□ 1.12
GGPS1-203ENST00000391855 SNAPC4Q5SXM2 1469 aa22.03■■□□□ 1.12
GGPS1-203ENST00000391855 CHD1O14646 1710 aa22.02■■□□□ 1.11
GGPS1-203ENST00000391855 PBRM1Q86U86 1689 aa22.01■■□□□ 1.11
GGPS1-203ENST00000391855 SYNJ2O15056 1496 aa21.95■■□□□ 1.1
GGPS1-203ENST00000391855 FBLN2P98095 1184 aa21.92■■□□□ 1.1
GGPS1-203ENST00000391855 CHMP7Q8WUX9 453 aaPredicted RBP21.89■■□□□ 1.1
GGPS1-203ENST00000391855 ERICH3Q5RHP9 1530 aa21.88■■□□□ 1.09
GGPS1-203ENST00000391855 ADAMTS12P58397 1594 aa21.85■■□□□ 1.09
GGPS1-203ENST00000391855 FHAD1B1AJZ9 1412 aa21.81■■□□□ 1.08
GGPS1-203ENST00000391855 CLASP1Q7Z460 1538 aa21.81■■□□□ 1.08
GGPS1-203ENST00000391855 ARHGEF11O15085 1522 aa21.79■■□□□ 1.08
GGPS1-203ENST00000391855 RIMBP3CA6NJZ7 1639 aa21.79■■□□□ 1.08
GGPS1-203ENST00000391855 RIMBP3BA6NNM3 1639 aa21.79■■□□□ 1.08
GGPS1-203ENST00000391855 RIMBP3Q9UFD9 1639 aa21.79■■□□□ 1.08
GGPS1-203ENST00000391855 KIF27Q86VH2 1401 aa21.78■■□□□ 1.08
GGPS1-203ENST00000391855 GRIN2AQ12879 1464 aa21.78■■□□□ 1.08
GGPS1-203ENST00000391855 NUP160Q12769 1436 aa21.7■■□□□ 1.06
GGPS1-203ENST00000391855 CUL7Q14999 1698 aa21.68■■□□□ 1.06
GGPS1-203ENST00000391855 TRIM41Q8WV44 630 aa21.66■■□□□ 1.06
GGPS1-203ENST00000391855 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
GGPS1-203ENST00000391855 IGF1RP08069 1367 aa21.64■■□□□ 1.05
GGPS1-203ENST00000391855 ARAP1Q96P48 1450 aa21.6■■□□□ 1.05
GGPS1-203ENST00000391855 SHROOM2Q13796 1616 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms