RNA–Protein interactions for RNA: ENST00000493348.1

TM4SF1-204, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 2

Gene TM4SF1, Length 976 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-204ENST00000493348 NISCHQ9Y2I1 1504 aa19.3■□□□□ 0.68
TM4SF1-204ENST00000493348 AEBP2Q6ZN18 517 aaPredicted RBP17.84■□□□□ 0.45
TM4SF1-204ENST00000493348 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
TM4SF1-204ENST00000493348 ABCC9O60706 1549 aa16.69■□□□□ 0.26
TM4SF1-204ENST00000493348 CHIC1Q5VXU3 224 aa16.68■□□□□ 0.26
TM4SF1-204ENST00000493348 DCAF8L2P0C7V8 631 aa16.23■□□□□ 0.19
TM4SF1-204ENST00000493348 RB1CC1Q8TDY2 1594 aa16.14■□□□□ 0.17
TM4SF1-204ENST00000493348 NACADO15069 1562 aa16.11■□□□□ 0.17
TM4SF1-204ENST00000493348 ZCCHC6Q5VYS8 1495 aaKnown RBP16.08■□□□□ 0.16
TM4SF1-204ENST00000493348 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
TM4SF1-204ENST00000493348 DCAF1Q9Y4B6 1507 aa15.97■□□□□ 0.15
TM4SF1-204ENST00000493348 UNC13AQ9UPW8 1703 aa15.74■□□□□ 0.11
TM4SF1-204ENST00000493348 SCRIBQ14160 1630 aa15.68■□□□□ 0.1
TM4SF1-204ENST00000493348 PABPN1Q86U42 306 aaKnown RBP eCLIP15.6■□□□□ 0.09
TM4SF1-204ENST00000493348 BICRAQ9NZM4 1560 aa15.52■□□□□ 0.07
TM4SF1-204ENST00000493348 SHROOM4Q9ULL8 1493 aa15.45■□□□□ 0.06
TM4SF1-204ENST00000493348 SENP3Q9H4L4 574 aaPredicted RBP15.27■□□□□ 0.04
TM4SF1-204ENST00000493348 EIF4G1Q04637 1599 aaKnown RBP15.17■□□□□ 0.02
TM4SF1-204ENST00000493348 CC2D2AQ9P2K1 1620 aa15.1■□□□□ 0.01
TM4SF1-204ENST00000493348 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
TM4SF1-204ENST00000493348 PHF23Q9BUL5 403 aaPredicted RBP15.03■□□□□ -0
TM4SF1-204ENST00000493348 BAZ1AQ9NRL2 1556 aaPredicted RBP15.01□□□□□ -0.01
TM4SF1-204ENST00000493348 CECR2Q9BXF3 1484 aa14.99□□□□□ -0.01
TM4SF1-204ENST00000493348 SMARCA4P51532 1647 aa14.98□□□□□ -0.01
TM4SF1-204ENST00000493348 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
TM4SF1-204ENST00000493348 MROH2BQ7Z745 1585 aa14.85□□□□□ -0.03
TM4SF1-204ENST00000493348 ATAD2BQ9ULI0 1458 aa14.84□□□□□ -0.03
TM4SF1-204ENST00000493348 NCAPD3P42695 1498 aa14.8□□□□□ -0.04
TM4SF1-204ENST00000493348 BAZ1BQ9UIG0 1483 aaKnown RBP14.8□□□□□ -0.04
TM4SF1-204ENST00000493348 HMGXB3Q12766 1538 aa14.79□□□□□ -0.04
TM4SF1-204ENST00000493348 PEG3Q9GZU2 1588 aa14.79□□□□□ -0.04
TM4SF1-204ENST00000493348 WIZO95785 1651 aa14.74□□□□□ -0.05
TM4SF1-204ENST00000493348 RSF1Q96T23 1441 aaPredicted RBP14.72□□□□□ -0.05
TM4SF1-204ENST00000493348 TOP2AP11388 1531 aaKnown RBP14.6□□□□□ -0.07
TM4SF1-204ENST00000493348 SUPT5HO00267 1087 aaKnown RBP14.55□□□□□ -0.08
TM4SF1-204ENST00000493348 LAMC3Q9Y6N6 1575 aa14.47□□□□□ -0.09
TM4SF1-204ENST00000493348 ERCC6Q03468 1493 aa14.46□□□□□ -0.09
TM4SF1-204ENST00000493348 NESP48681 1621 aa14.42□□□□□ -0.1
TM4SF1-204ENST00000493348 CADPSQ9ULU8 1353 aa14.42□□□□□ -0.1
TM4SF1-204ENST00000493348 CCDC88BA6NC98 1476 aa14.4□□□□□ -0.1
TM4SF1-204ENST00000493348 PDS5BQ9NTI5 1447 aa14.4□□□□□ -0.1
TM4SF1-204ENST00000493348 PRDM2Q13029 1718 aa14.35□□□□□ -0.11
TM4SF1-204ENST00000493348 KIF21AQ7Z4S6 1674 aa14.33□□□□□ -0.11
TM4SF1-204ENST00000493348 CFTRP13569 1480 aa14.32□□□□□ -0.12
TM4SF1-204ENST00000493348 FANCD2Q9BXW9 1451 aa14.27□□□□□ -0.12
TM4SF1-204ENST00000493348 CEP164Q9UPV0 1460 aa14.27□□□□□ -0.12
TM4SF1-204ENST00000493348 FOXD1Q16676 465 aa14.27□□□□□ -0.13
TM4SF1-204ENST00000493348 CUX2O14529 1486 aa14.2□□□□□ -0.14
TM4SF1-204ENST00000493348 MRC2Q9UBG0 1479 aa14.2□□□□□ -0.14
TM4SF1-204ENST00000493348 THOC2Q8NI27 1593 aaKnown RBP14.2□□□□□ -0.14
TM4SF1-204ENST00000493348 WDR62O43379 1518 aa14.12□□□□□ -0.15
TM4SF1-204ENST00000493348 ABCC8Q09428 1581 aa14.1□□□□□ -0.15
TM4SF1-204ENST00000493348 URB2Q14146 1524 aaKnown RBP14.07□□□□□ -0.16
TM4SF1-204ENST00000493348 DNMBPQ6XZF7 1577 aa14.06□□□□□ -0.16
TM4SF1-204ENST00000493348 TOPBP1Q92547 1522 aa14.03□□□□□ -0.16
TM4SF1-204ENST00000493348 IFT140Q96RY7 1462 aa13.95□□□□□ -0.18
TM4SF1-204ENST00000493348 WRNQ14191 1432 aaPredicted RBP eCLIP13.94□□□□□ -0.18
TM4SF1-204ENST00000493348 CUX1P39880 1505 aa13.94□□□□□ -0.18
TM4SF1-204ENST00000493348 POLA1P09884 1462 aaPredicted RBP13.91□□□□□ -0.18
TM4SF1-204ENST00000493348 FGD5Q6ZNL6 1462 aa13.91□□□□□ -0.18
TM4SF1-204ENST00000493348 SOGA1O94964 1423 aa13.9□□□□□ -0.19
TM4SF1-204ENST00000493348 TOP2BQ02880 1626 aa13.89□□□□□ -0.19
TM4SF1-204ENST00000493348 BIVM-ERCC5R4GMW8 1640 aa13.89□□□□□ -0.19
TM4SF1-204ENST00000493348 SYNJ1O43426 1573 aa13.86□□□□□ -0.19
TM4SF1-204ENST00000493348 TARBP1Q13395 1621 aaKnown RBP13.85□□□□□ -0.19
TM4SF1-204ENST00000493348 RAD54L2Q9Y4B4 1467 aa13.85□□□□□ -0.19
TM4SF1-204ENST00000493348 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.2
TM4SF1-204ENST00000493348 ZNF608Q9ULD9 1512 aaPredicted RBP13.82□□□□□ -0.2
TM4SF1-204ENST00000493348 WDR97A6NE52 1622 aa13.82□□□□□ -0.2
TM4SF1-204ENST00000493348 TDRD9Q8NDG6 1382 aaKnown RBP13.78□□□□□ -0.2
TM4SF1-204ENST00000493348 AQRO60306 1485 aaKnown RBP eCLIP13.78□□□□□ -0.28e-7■■■■■ 28.7
TM4SF1-204ENST00000493348 ABCA10Q8WWZ4 1543 aa13.77□□□□□ -0.21
TM4SF1-204ENST00000493348 TRIM41Q8WV44 630 aa13.75□□□□□ -0.21
TM4SF1-204ENST00000493348 GAPVD1Q14C86 1478 aa13.74□□□□□ -0.21
TM4SF1-204ENST00000493348 PBRM1Q86U86 1689 aa13.74□□□□□ -0.21
TM4SF1-204ENST00000493348 GRIN2BQ13224 1484 aa13.73□□□□□ -0.21
TM4SF1-204ENST00000493348 FBLN2P98095 1184 aa13.72□□□□□ -0.21
TM4SF1-204ENST00000493348 ABCA5Q8WWZ7 1642 aa13.7□□□□□ -0.22
TM4SF1-204ENST00000493348 SNAPC4Q5SXM2 1469 aa13.67□□□□□ -0.22
TM4SF1-204ENST00000493348 MAGI1Q96QZ7 1491 aaPredicted RBP13.67□□□□□ -0.22
TM4SF1-204ENST00000493348 KIF27Q86VH2 1401 aa13.67□□□□□ -0.22
TM4SF1-204ENST00000493348 CHMP7Q8WUX9 453 aaPredicted RBP13.67□□□□□ -0.22
TM4SF1-204ENST00000493348 CHD1O14646 1710 aa13.67□□□□□ -0.22
TM4SF1-204ENST00000493348 POTEDQ86YR6 584 aa13.66□□□□□ -0.22
TM4SF1-204ENST00000493348 OSCARQ8IYS5 282 aa13.66□□□□□ -0.22
TM4SF1-204ENST00000493348 ERICH3Q5RHP9 1530 aa13.64□□□□□ -0.23
TM4SF1-204ENST00000493348 SYNJ2O15056 1496 aa13.61□□□□□ -0.23
TM4SF1-204ENST00000493348 DNAJC5Q9H3Z4 198 aa13.6□□□□□ -0.23
TM4SF1-204ENST00000493348 ADAMTS12P58397 1594 aa13.58□□□□□ -0.23
TM4SF1-204ENST00000493348 FHAD1B1AJZ9 1412 aa13.58□□□□□ -0.24
TM4SF1-204ENST00000493348 CUL7Q14999 1698 aa13.58□□□□□ -0.24
TM4SF1-204ENST00000493348 GRIN2AQ12879 1464 aa13.53□□□□□ -0.24
TM4SF1-204ENST00000493348 IGF1RP08069 1367 aa13.52□□□□□ -0.25
TM4SF1-204ENST00000493348 CARMIL1Q5VZK9 1371 aa13.5□□□□□ -0.25
TM4SF1-204ENST00000493348 EEA1Q15075 1411 aa13.48□□□□□ -0.25
TM4SF1-204ENST00000493348 RUSC2Q8N2Y8 1516 aa13.47□□□□□ -0.25
TM4SF1-204ENST00000493348 MSH5O43196 834 aa13.46□□□□□ -0.25
TM4SF1-204ENST00000493348 FAM9AQ8IZU1 332 aaPredicted RBP13.45□□□□□ -0.26
TM4SF1-204ENST00000493348 RAPGEF2Q9Y4G8 1499 aa13.44□□□□□ -0.26
TM4SF1-204ENST00000493348 CLASP1Q7Z460 1538 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms