RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 NISCHQ9Y2I1 1504 aa29.39■■■□□ 2.3
VPS9D1-201ENST00000389386 CCDC180Q9P1Z9 1646 aa25.44■■□□□ 1.66
VPS9D1-201ENST00000389386 HRCP23327 699 aa24.9■■□□□ 1.58
VPS9D1-201ENST00000389386 SHROOM4Q9ULL8 1493 aa24.88■■□□□ 1.57
VPS9D1-201ENST00000389386 DCAF8L2P0C7V8 631 aa24.79■■□□□ 1.56
VPS9D1-201ENST00000389386 ZCCHC6Q5VYS8 1495 aaKnown RBP24.64■■□□□ 1.54
VPS9D1-201ENST00000389386 ABCC9O60706 1549 aa24.52■■□□□ 1.52
VPS9D1-201ENST00000389386 PELP1Q8IZL8 1130 aaKnown RBP24.39■■□□□ 1.49
VPS9D1-201ENST00000389386 PPARGC1BQ86YN6 1023 aaKnown RBP24.28■■□□□ 1.48
VPS9D1-201ENST00000389386 SUPT5HO00267 1087 aaKnown RBP24.23■■□□□ 1.47
VPS9D1-201ENST00000389386 PCGF6Q9BYE7 350 aa24.19■■□□□ 1.46
VPS9D1-201ENST00000389386 DCAF1Q9Y4B6 1507 aa24.08■■□□□ 1.44
VPS9D1-201ENST00000389386 MYO15BQ96JP2 1530 aa24.03■■□□□ 1.44
VPS9D1-201ENST00000389386 CHIC1Q5VXU3 224 aa23.83■■□□□ 1.41
VPS9D1-201ENST00000389386 NACADO15069 1562 aa23.77■■□□□ 1.4
VPS9D1-201ENST00000389386 SCRIBQ14160 1630 aa23.73■■□□□ 1.39
VPS9D1-201ENST00000389386 SCAF1Q9H7N4 1312 aaKnown RBP23.65■■□□□ 1.38
VPS9D1-201ENST00000389386 RB1CC1Q8TDY2 1594 aa23.63■■□□□ 1.37
VPS9D1-201ENST00000389386 MYT1Q01538 1121 aa23.56■■□□□ 1.36
VPS9D1-201ENST00000389386 TRIM26Q12899 539 aaPredicted RBP23.43■■□□□ 1.34
VPS9D1-201ENST00000389386 ZEB1P37275 1124 aaPredicted RBP23.34■■□□□ 1.33
VPS9D1-201ENST00000389386 PABPN1Q86U42 306 aaKnown RBP eCLIP23.25■■□□□ 1.311e-6■■■■□ 24.3
VPS9D1-201ENST00000389386 LOC105371045A0A1W2PR82 267 aa23.25■■□□□ 1.31
VPS9D1-201ENST00000389386 UNC13AQ9UPW8 1703 aa23.24■■□□□ 1.31
VPS9D1-201ENST00000389386 CECR2Q9BXF3 1484 aa23.03■■□□□ 1.28
VPS9D1-201ENST00000389386 ACIN1Q9UKV3 1341 aaKnown RBP23.02■■□□□ 1.28
VPS9D1-201ENST00000389386 BICRAQ9NZM4 1560 aa23■■□□□ 1.27
VPS9D1-201ENST00000389386 RSF1Q96T23 1441 aaPredicted RBP22.97■■□□□ 1.27
VPS9D1-201ENST00000389386 NEUROD1Q13562 356 aa22.92■■□□□ 1.26
VPS9D1-201ENST00000389386 MROH2BQ7Z745 1585 aa22.82■■□□□ 1.24
VPS9D1-201ENST00000389386 GTF3C3Q9Y5Q9 886 aa22.8■■□□□ 1.24
VPS9D1-201ENST00000389386 CENPBP07199 599 aaPredicted RBP22.66■■□□□ 1.22
VPS9D1-201ENST00000389386 BAZ1AQ9NRL2 1556 aaPredicted RBP22.65■■□□□ 1.22
VPS9D1-201ENST00000389386 WIZO95785 1651 aa22.65■■□□□ 1.22
VPS9D1-201ENST00000389386 SMARCA4P51532 1647 aa22.6■■□□□ 1.21
VPS9D1-201ENST00000389386 TRIM41Q8WV44 630 aa22.49■■□□□ 1.19
VPS9D1-201ENST00000389386 DIEXFQ68CQ4 756 aaKnown RBP22.47■■□□□ 1.19
VPS9D1-201ENST00000389386 FAM9AQ8IZU1 332 aaPredicted RBP22.45■■□□□ 1.19
VPS9D1-201ENST00000389386 EHMT2Q96KQ7 1210 aa22.4■■□□□ 1.18
VPS9D1-201ENST00000389386 TTBK1Q5TCY1 1321 aaPredicted RBP22.37■■□□□ 1.17
VPS9D1-201ENST00000389386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.33■■□□□ 1.17
VPS9D1-201ENST00000389386 EIF4G1Q04637 1599 aaKnown RBP22.32■■□□□ 1.16
VPS9D1-201ENST00000389386 CCER1Q8TC90 406 aaPredicted RBP22.31■■□□□ 1.16
VPS9D1-201ENST00000389386 ATAD2BQ9ULI0 1458 aa22.27■■□□□ 1.16
VPS9D1-201ENST00000389386 TOP2AP11388 1531 aaKnown RBP22.25■■□□□ 1.15
VPS9D1-201ENST00000389386 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
VPS9D1-201ENST00000389386 BAZ1BQ9UIG0 1483 aaKnown RBP22.17■■□□□ 1.14
VPS9D1-201ENST00000389386 SMARCA2P51531 1590 aa22.15■■□□□ 1.14
VPS9D1-201ENST00000389386 CCDC88BA6NC98 1476 aa22.15■■□□□ 1.14
VPS9D1-201ENST00000389386 CC2D2AQ9P2K1 1620 aa22.04■■□□□ 1.12
VPS9D1-201ENST00000389386 YTHDC1Q96MU7 727 aaKnown RBP22.03■■□□□ 1.12
VPS9D1-201ENST00000389386 ZNF316A6NFI3 1004 aaPredicted RBP22.02■■□□□ 1.12
VPS9D1-201ENST00000389386 NCAPD3P42695 1498 aa22■■□□□ 1.11
VPS9D1-201ENST00000389386 ABCC8Q09428 1581 aa22■■□□□ 1.11
VPS9D1-201ENST00000389386 BCL11AQ9H165 835 aa21.96■■□□□ 1.11
VPS9D1-201ENST00000389386 HMGXB3Q12766 1538 aa21.91■■□□□ 1.1
VPS9D1-201ENST00000389386 MIER1Q8N108 512 aa21.89■■□□□ 1.09
VPS9D1-201ENST00000389386 DNAJC5BQ9UF47 199 aa21.85■■□□□ 1.09
VPS9D1-201ENST00000389386 ANP32EQ9BTT0 268 aa21.82■■□□□ 1.08
VPS9D1-201ENST00000389386 PRKCSHP14314 528 aaPredicted RBP21.79■■□□□ 1.08
VPS9D1-201ENST00000389386 SOGA1O94964 1423 aa21.72■■□□□ 1.07
VPS9D1-201ENST00000389386 CLSPNQ9HAW4 1339 aa21.7■■□□□ 1.06
VPS9D1-201ENST00000389386 SUPT16HQ9Y5B9 1047 aaKnown RBP21.68■■□□□ 1.06
VPS9D1-201ENST00000389386 TSHZ2Q9NRE2 1034 aa21.66■■□□□ 1.06
VPS9D1-201ENST00000389386 RUSC2Q8N2Y8 1516 aa21.66■■□□□ 1.06
VPS9D1-201ENST00000389386 WRNQ14191 1432 aaPredicted RBP eCLIP21.65■■□□□ 1.06
VPS9D1-201ENST00000389386 CSRNP3Q8WYN3 585 aa21.57■■□□□ 1.04
VPS9D1-201ENST00000389386 CFTRP13569 1480 aa21.54■■□□□ 1.04
VPS9D1-201ENST00000389386 CADPSQ9ULU8 1353 aa21.53■■□□□ 1.04
VPS9D1-201ENST00000389386 UBTFP17480 764 aaKnown RBP21.52■■□□□ 1.04
VPS9D1-201ENST00000389386 NESP48681 1621 aa21.52■■□□□ 1.04
VPS9D1-201ENST00000389386 SYNJ1O43426 1573 aa21.5■■□□□ 1.03
VPS9D1-201ENST00000389386 CEP162Q5TB80 1403 aa21.41■■□□□ 1.02
VPS9D1-201ENST00000389386 RANGAP1P46060 587 aaPredicted RBP21.36■■□□□ 1.01
VPS9D1-201ENST00000389386 EEA1Q15075 1411 aa21.34■■□□□ 1.01
VPS9D1-201ENST00000389386 TNIKQ9UKE5 1360 aa21.33■■□□□ 1
VPS9D1-201ENST00000389386 FANCD2Q9BXW9 1451 aa21.32■■□□□ 1
VPS9D1-201ENST00000389386 CUX1P39880 1505 aa21.3■■□□□ 1
VPS9D1-201ENST00000389386 PRDM2Q13029 1718 aa21.29■■□□□ 1
VPS9D1-201ENST00000389386 GOLGA3Q08378 1498 aa21.27■■□□□ 1
VPS9D1-201ENST00000389386 TOP2BQ02880 1626 aa21.26■□□□□ 0.99
VPS9D1-201ENST00000389386 HNRNPUL2Q1KMD3 747 aaKnown RBP21.24■□□□□ 0.99
VPS9D1-201ENST00000389386 ERICH6Q7L0X2 663 aa21.24■□□□□ 0.99
VPS9D1-201ENST00000389386 LAMC3Q9Y6N6 1575 aa21.23■□□□□ 0.99
VPS9D1-201ENST00000389386 BIVM-ERCC5R4GMW8 1640 aa21.19■□□□□ 0.98
VPS9D1-201ENST00000389386 CEP164Q9UPV0 1460 aa21.18■□□□□ 0.98
VPS9D1-201ENST00000389386 RAPGEF2Q9Y4G8 1499 aa21.18■□□□□ 0.98
VPS9D1-201ENST00000389386 PDS5BQ9NTI5 1447 aa21.15■□□□□ 0.98
VPS9D1-201ENST00000389386 KIF21AQ7Z4S6 1674 aa21.12■□□□□ 0.97
VPS9D1-201ENST00000389386 RBM19Q9Y4C8 960 aaKnown RBP21.12■□□□□ 0.97
VPS9D1-201ENST00000389386 KIF21BO75037 1637 aa21.09■□□□□ 0.97
VPS9D1-201ENST00000389386 FGD5Q6ZNL6 1462 aa21.09■□□□□ 0.97
VPS9D1-201ENST00000389386 CLIP1P30622 1438 aa21.08■□□□□ 0.97
VPS9D1-201ENST00000389386 APLP2Q06481 763 aa21.08■□□□□ 0.96
VPS9D1-201ENST00000389386 BCANQ96GW7 911 aa21.08■□□□□ 0.96
VPS9D1-201ENST00000389386 URB2Q14146 1524 aaKnown RBP21.06■□□□□ 0.96
VPS9D1-201ENST00000389386 TOPBP1Q92547 1522 aa21.06■□□□□ 0.96
VPS9D1-201ENST00000389386 RAD54L2Q9Y4B4 1467 aa21.03■□□□□ 0.96
VPS9D1-201ENST00000389386 DNMBPQ6XZF7 1577 aa21.02■□□□□ 0.96
VPS9D1-201ENST00000389386 FKBP8Q14318 412 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms