RNA–Protein interactions for RNA: ENST00000599680.1

IRF3-224, Transcript of interferon regulatory factor 3, humanhuman

TSL 3

Gene IRF3, Length 472 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-224ENST00000599680 NISCHQ9Y2I1 1504 aa35.22■■■■□ 3.23
IRF3-224ENST00000599680 CCDC180Q9P1Z9 1646 aa31.57■■■□□ 2.64
IRF3-224ENST00000599680 ABCC9O60706 1549 aa31.07■■■□□ 2.56
IRF3-224ENST00000599680 RB1CC1Q8TDY2 1594 aa29.82■■■□□ 2.36
IRF3-224ENST00000599680 NACADO15069 1562 aa29.67■■■□□ 2.34
IRF3-224ENST00000599680 DCAF8L2P0C7V8 631 aa29.58■■■□□ 2.33
IRF3-224ENST00000599680 MYO15BQ96JP2 1530 aa29.34■■■□□ 2.29
IRF3-224ENST00000599680 ZCCHC6Q5VYS8 1495 aaKnown RBP29.27■■■□□ 2.28
IRF3-224ENST00000599680 UNC13AQ9UPW8 1703 aa29.24■■■□□ 2.27
IRF3-224ENST00000599680 DCAF1Q9Y4B6 1507 aa29.11■■■□□ 2.25
IRF3-224ENST00000599680 PABPN1Q86U42 306 aaKnown RBP eCLIP28.93■■■□□ 2.223e-9■■■■■ 34.5
IRF3-224ENST00000599680 BICRAQ9NZM4 1560 aa28.85■■■□□ 2.21
IRF3-224ENST00000599680 SCRIBQ14160 1630 aa28.76■■■□□ 2.19
IRF3-224ENST00000599680 DNAJC5BQ9UF47 199 aa28.65■■■□□ 2.18
IRF3-224ENST00000599680 SHROOM4Q9ULL8 1493 aa28.54■■■□□ 2.16
IRF3-224ENST00000599680 EIF4G1Q04637 1599 aaKnown RBP28.15■■■□□ 2.1
IRF3-224ENST00000599680 CC2D2AQ9P2K1 1620 aa28.13■■■□□ 2.09
IRF3-224ENST00000599680 CECR2Q9BXF3 1484 aa27.95■■■□□ 2.06
IRF3-224ENST00000599680 SMARCA4P51532 1647 aa27.45■■□□□ 1.99
IRF3-224ENST00000599680 BAZ1AQ9NRL2 1556 aaPredicted RBP27.36■■□□□ 1.97
IRF3-224ENST00000599680 SMARCA2P51531 1590 aa27.33■■□□□ 1.97
IRF3-224ENST00000599680 NCAPD3P42695 1498 aa27.3■■□□□ 1.96
IRF3-224ENST00000599680 ATAD2BQ9ULI0 1458 aa27.29■■□□□ 1.96
IRF3-224ENST00000599680 HMGXB3Q12766 1538 aa27.22■■□□□ 1.95
IRF3-224ENST00000599680 PEG3Q9GZU2 1588 aa27.14■■□□□ 1.93
IRF3-224ENST00000599680 MROH2BQ7Z745 1585 aa27.13■■□□□ 1.93
IRF3-224ENST00000599680 BAZ1BQ9UIG0 1483 aaKnown RBP27.12■■□□□ 1.93
IRF3-224ENST00000599680 WIZO95785 1651 aa26.9■■□□□ 1.9
IRF3-224ENST00000599680 ERCC6Q03468 1493 aa26.86■■□□□ 1.89
IRF3-224ENST00000599680 NESP48681 1621 aa26.78■■□□□ 1.88
IRF3-224ENST00000599680 LAMC3Q9Y6N6 1575 aa26.74■■□□□ 1.87
IRF3-224ENST00000599680 RSF1Q96T23 1441 aaPredicted RBP26.67■■□□□ 1.86
IRF3-224ENST00000599680 CUX2O14529 1486 aa26.63■■□□□ 1.85
IRF3-224ENST00000599680 KIF21AQ7Z4S6 1674 aa26.6■■□□□ 1.85
IRF3-224ENST00000599680 TOP2AP11388 1531 aaKnown RBP26.57■■□□□ 1.84
IRF3-224ENST00000599680 PDS5BQ9NTI5 1447 aa26.51■■□□□ 1.83
IRF3-224ENST00000599680 THOC2Q8NI27 1593 aaKnown RBP26.5■■□□□ 1.83
IRF3-224ENST00000599680 CADPSQ9ULU8 1353 aa26.49■■□□□ 1.83
IRF3-224ENST00000599680 PRDM2Q13029 1718 aa26.31■■□□□ 1.8
IRF3-224ENST00000599680 CFTRP13569 1480 aa26.29■■□□□ 1.8
IRF3-224ENST00000599680 MRC2Q9UBG0 1479 aa26.28■■□□□ 1.8
IRF3-224ENST00000599680 CEP164Q9UPV0 1460 aa26.27■■□□□ 1.8
IRF3-224ENST00000599680 FANCD2Q9BXW9 1451 aa26.24■■□□□ 1.79
IRF3-224ENST00000599680 CCDC88BA6NC98 1476 aa26.21■■□□□ 1.79
IRF3-224ENST00000599680 WDR62O43379 1518 aa26.19■■□□□ 1.78
IRF3-224ENST00000599680 DNAJC5Q9H3Z4 198 aa26.07■■□□□ 1.76
IRF3-224ENST00000599680 URB2Q14146 1524 aaKnown RBP25.98■■□□□ 1.75
IRF3-224ENST00000599680 SUPT5HO00267 1087 aaKnown RBP25.84■■□□□ 1.73
IRF3-224ENST00000599680 ABCC8Q09428 1581 aa25.8■■□□□ 1.72
IRF3-224ENST00000599680 TOPBP1Q92547 1522 aa25.79■■□□□ 1.72
IRF3-224ENST00000599680 DNMBPQ6XZF7 1577 aa25.78■■□□□ 1.72
IRF3-224ENST00000599680 IFT140Q96RY7 1462 aa25.7■■□□□ 1.7
IRF3-224ENST00000599680 ZNF608Q9ULD9 1512 aaPredicted RBP25.58■■□□□ 1.69
IRF3-224ENST00000599680 EIF4G3O43432 1585 aaKnown RBP25.57■■□□□ 1.68
IRF3-224ENST00000599680 TARBP1Q13395 1621 aaKnown RBP25.56■■□□□ 1.68
IRF3-224ENST00000599680 POLA1P09884 1462 aaPredicted RBP25.54■■□□□ 1.68
IRF3-224ENST00000599680 CUX1P39880 1505 aa25.47■■□□□ 1.67
IRF3-224ENST00000599680 FGD5Q6ZNL6 1462 aa25.46■■□□□ 1.67
IRF3-224ENST00000599680 OSCARQ8IYS5 282 aa25.44■■□□□ 1.66
IRF3-224ENST00000599680 SOGA1O94964 1423 aa25.43■■□□□ 1.66
IRF3-224ENST00000599680 RAD54L2Q9Y4B4 1467 aa25.42■■□□□ 1.66
IRF3-224ENST00000599680 AQRO60306 1485 aaKnown RBP eCLIP25.4■■□□□ 1.661e-7■■■■■ 40.2
IRF3-224ENST00000599680 WDR97A6NE52 1622 aa25.37■■□□□ 1.65
IRF3-224ENST00000599680 CHD1O14646 1710 aa25.37■■□□□ 1.65
IRF3-224ENST00000599680 TDRD9Q8NDG6 1382 aaKnown RBP25.31■■□□□ 1.64
IRF3-224ENST00000599680 BIVM-ERCC5R4GMW8 1640 aa25.27■■□□□ 1.64
IRF3-224ENST00000599680 PBRM1Q86U86 1689 aa25.26■■□□□ 1.63
IRF3-224ENST00000599680 TOP2BQ02880 1626 aa25.23■■□□□ 1.63
IRF3-224ENST00000599680 FBLN2P98095 1184 aa25.21■■□□□ 1.63
IRF3-224ENST00000599680 WRNQ14191 1432 aaPredicted RBP eCLIP25.2■■□□□ 1.63
IRF3-224ENST00000599680 SYNJ1O43426 1573 aa25.2■■□□□ 1.62
IRF3-224ENST00000599680 SNAPC4Q5SXM2 1469 aa25.2■■□□□ 1.62
IRF3-224ENST00000599680 TRIM41Q8WV44 630 aa25.19■■□□□ 1.62
IRF3-224ENST00000599680 GRIN2BQ13224 1484 aa25.19■■□□□ 1.62
IRF3-224ENST00000599680 ABCA10Q8WWZ4 1543 aa25.17■■□□□ 1.62
IRF3-224ENST00000599680 MAGI1Q96QZ7 1491 aaPredicted RBP25.16■■□□□ 1.62
IRF3-224ENST00000599680 RIMBP3CA6NJZ7 1639 aa25.16■■□□□ 1.62
IRF3-224ENST00000599680 RIMBP3BA6NNM3 1639 aa25.16■■□□□ 1.62
IRF3-224ENST00000599680 ABCA5Q8WWZ7 1642 aa25.16■■□□□ 1.62
IRF3-224ENST00000599680 RIMBP3Q9UFD9 1639 aa25.16■■□□□ 1.62
IRF3-224ENST00000599680 GAPVD1Q14C86 1478 aa25.15■■□□□ 1.62
IRF3-224ENST00000599680 CHMP7Q8WUX9 453 aaPredicted RBP25.07■■□□□ 1.6
IRF3-224ENST00000599680 ARHGEF11O15085 1522 aa25.07■■□□□ 1.6
IRF3-224ENST00000599680 SYNJ2O15056 1496 aa25.06■■□□□ 1.6
IRF3-224ENST00000599680 CLASP1Q7Z460 1538 aa24.96■■□□□ 1.59
IRF3-224ENST00000599680 ADAMTS12P58397 1594 aa24.94■■□□□ 1.58
IRF3-224ENST00000599680 ERICH3Q5RHP9 1530 aa24.9■■□□□ 1.58
IRF3-224ENST00000599680 GRIN2AQ12879 1464 aa24.87■■□□□ 1.57
IRF3-224ENST00000599680 FHAD1B1AJZ9 1412 aa24.83■■□□□ 1.57
IRF3-224ENST00000599680 CYB5RLQ6IPT4 315 aa24.82■■□□□ 1.56
IRF3-224ENST00000599680 ARAP1Q96P48 1450 aa24.82■■□□□ 1.56
IRF3-224ENST00000599680 CEP170Q5SW79 1584 aa24.77■■□□□ 1.56
IRF3-224ENST00000599680 NUP160Q12769 1436 aa24.71■■□□□ 1.55
IRF3-224ENST00000599680 KIF27Q86VH2 1401 aa24.71■■□□□ 1.55
IRF3-224ENST00000599680 CUL7Q14999 1698 aa24.7■■□□□ 1.54
IRF3-224ENST00000599680 SHROOM2Q13796 1616 aa24.64■■□□□ 1.54
IRF3-224ENST00000599680 RUSC2Q8N2Y8 1516 aa24.59■■□□□ 1.53
IRF3-224ENST00000599680 ERCC6L2Q5T890 1561 aa24.59■■□□□ 1.53
IRF3-224ENST00000599680 IGF1RP08069 1367 aa24.57■■□□□ 1.52
IRF3-224ENST00000599680 PRG4Q92954 1404 aaPredicted RBP24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms