RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 DCAF8L2P0C7V8 631 aa26.28■■□□□ 1.8
CHD4-210ENST00000544040 SUPT5HO00267 1087 aaKnown RBP25.09■■□□□ 1.61
CHD4-210ENST00000544040 EHMT2Q96KQ7 1210 aa24.93■■□□□ 1.58
CHD4-210ENST00000544040 PELP1Q8IZL8 1130 aaKnown RBP24.91■■□□□ 1.58
CHD4-210ENST00000544040 SHROOM4Q9ULL8 1493 aa24.4■■□□□ 1.5
CHD4-210ENST00000544040 ERICH6Q7L0X2 663 aa24.19■■□□□ 1.46
CHD4-210ENST00000544040 TTBK1Q5TCY1 1321 aaPredicted RBP24.13■■□□□ 1.45
CHD4-210ENST00000544040 APLP2Q06481 763 aa24.1■■□□□ 1.45
CHD4-210ENST00000544040 PCGF6Q9BYE7 350 aa23.9■■□□□ 1.42
CHD4-210ENST00000544040 FAM9AQ8IZU1 332 aaPredicted RBP23.87■■□□□ 1.41
CHD4-210ENST00000544040 CCER1Q8TC90 406 aaPredicted RBP23.79■■□□□ 1.4
CHD4-210ENST00000544040 CENPBP07199 599 aaPredicted RBP23.79■■□□□ 1.4
CHD4-210ENST00000544040 RANGAP1P46060 587 aaPredicted RBP23.62■■□□□ 1.37
CHD4-210ENST00000544040 YTHDC1Q96MU7 727 aaKnown RBP23.54■■□□□ 1.36
CHD4-210ENST00000544040 MYT1Q01538 1121 aa23.4■■□□□ 1.34
CHD4-210ENST00000544040 NEFLP07196 543 aa23.37■■□□□ 1.33
CHD4-210ENST00000544040 ATP1B4Q9UN42 357 aaPredicted RBP23.35■■□□□ 1.33
CHD4-210ENST00000544040 ZEB1P37275 1124 aaPredicted RBP23.33■■□□□ 1.33
CHD4-210ENST00000544040 NISCHQ9Y2I1 1504 aa23.16■■□□□ 1.3
CHD4-210ENST00000544040 TRIM41Q8WV44 630 aa23.01■■□□□ 1.27
CHD4-210ENST00000544040 PPARGC1BQ86YN6 1023 aaKnown RBP22.99■■□□□ 1.27
CHD4-210ENST00000544040 UBTFP17480 764 aaKnown RBP22.95■■□□□ 1.26
CHD4-210ENST00000544040 DAXXQ9UER7 740 aaPredicted RBP22.93■■□□□ 1.26
CHD4-210ENST00000544040 POLR3GLQ9BT43 218 aa22.76■■□□□ 1.23
CHD4-210ENST00000544040 CNGB1Q14028 1251 aaPredicted RBP22.7■■□□□ 1.22
CHD4-210ENST00000544040 ITGAEP38570 1179 aa22.58■■□□□ 1.2
CHD4-210ENST00000544040 HRCP23327 699 aa22.54■■□□□ 1.2
CHD4-210ENST00000544040 TRIM26Q12899 539 aaPredicted RBP22.48■■□□□ 1.19
CHD4-210ENST00000544040 MYT1LQ9UL68 1186 aa22.44■■□□□ 1.18
CHD4-210ENST00000544040 RTL5Q5HYW3 569 aaPredicted RBP22.42■■□□□ 1.18
CHD4-210ENST00000544040 ZNF316A6NFI3 1004 aaPredicted RBP22.41■■□□□ 1.18
CHD4-210ENST00000544040 CLSPNQ9HAW4 1339 aa22.32■■□□□ 1.16
CHD4-210ENST00000544040 HNRNPUL2Q1KMD3 747 aaKnown RBP22.31■■□□□ 1.16
CHD4-210ENST00000544040 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
CHD4-210ENST00000544040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.3■■□□□ 1.16
CHD4-210ENST00000544040 SLC4A1APQ9BWU0 796 aaKnown RBP22.29■■□□□ 1.16
CHD4-210ENST00000544040 BCANQ96GW7 911 aa22.14■■□□□ 1.14
CHD4-210ENST00000544040 LOC105371045A0A1W2PR82 267 aa22.14■■□□□ 1.13
CHD4-210ENST00000544040 DIEXFQ68CQ4 756 aaKnown RBP22.08■■□□□ 1.13
CHD4-210ENST00000544040 GTF3C3Q9Y5Q9 886 aa21.91■■□□□ 1.1
CHD4-210ENST00000544040 BCL11AQ9H165 835 aa21.87■■□□□ 1.09
CHD4-210ENST00000544040 NEUROD1Q13562 356 aa21.8■■□□□ 1.08
CHD4-210ENST00000544040 CDK11AQ9UQ88 783 aaPredicted RBP21.8■■□□□ 1.08
CHD4-210ENST00000544040 FAM50AQ14320 339 aaKnown RBP21.77■■□□□ 1.08
CHD4-210ENST00000544040 TRIM52Q96A61 297 aa21.74■■□□□ 1.07
CHD4-210ENST00000544040 ZBTB47Q9UFB7 747 aaPredicted RBP21.69■■□□□ 1.06
CHD4-210ENST00000544040 ZNF326Q5BKZ1 582 aaKnown RBP21.66■■□□□ 1.06
CHD4-210ENST00000544040 SLC24A1O60721 1099 aa21.63■■□□□ 1.05
CHD4-210ENST00000544040 ANP32CO43423 234 aa21.62■■□□□ 1.05
CHD4-210ENST00000544040 EIF5BO60841 1220 aaKnown RBP21.6■■□□□ 1.05
CHD4-210ENST00000544040 CANXP27824 592 aaKnown RBP21.6■■□□□ 1.05
CHD4-210ENST00000544040 NPM2Q86SE8 214 aaKnown RBP21.57■■□□□ 1.04
CHD4-210ENST00000544040 ANP32AP39687 249 aaKnown RBP21.47■■□□□ 1.03
CHD4-210ENST00000544040 ACIN1Q9UKV3 1341 aaKnown RBP21.34■■□□□ 1.01
CHD4-210ENST00000544040 ANP32BQ92688 251 aaKnown RBP21.27■□□□□ 0.99
CHD4-210ENST00000544040 NEFMP07197 916 aa21.24■□□□□ 0.99
CHD4-210ENST00000544040 FKBP8Q14318 412 aa21.22■□□□□ 0.99
CHD4-210ENST00000544040 HSP90AA1P07900 732 aaKnown RBP21.21■□□□□ 0.99
CHD4-210ENST00000544040 ARXQ96QS3 562 aa21.21■□□□□ 0.99
CHD4-210ENST00000544040 NBR1Q14596 966 aa21.19■□□□□ 0.98
CHD4-210ENST00000544040 GLIPR1L2Q4G1C9 344 aa21.12■□□□□ 0.97
CHD4-210ENST00000544040 ARID3CA6NKF2 412 aa21.12■□□□□ 0.97
CHD4-210ENST00000544040 SALL2Q9Y467 1007 aaPredicted RBP21.05■□□□□ 0.96
CHD4-210ENST00000544040 FBLN2P98095 1184 aa21.03■□□□□ 0.96
CHD4-210ENST00000544040 UPF2Q9HAU5 1272 aaKnown RBP21.01■□□□□ 0.95
CHD4-210ENST00000544040 P3H3Q8IVL6 736 aa21■□□□□ 0.95
CHD4-210ENST00000544040 FAM9BQ8IZU0 186 aa20.99■□□□□ 0.95
CHD4-210ENST00000544040 HNRNPUQ00839 825 aaKnown RBP eCLIP20.99■□□□□ 0.95
CHD4-210ENST00000544040 ZNF777Q9ULD5 760 aaPredicted RBP20.94■□□□□ 0.94
CHD4-210ENST00000544040 CCDC136Q96JN2 1154 aa20.86■□□□□ 0.93
CHD4-210ENST00000544040 DDX10Q13206 875 aaKnown RBP20.86■□□□□ 0.93
CHD4-210ENST00000544040 IRX6P78412 446 aaPredicted RBP20.84■□□□□ 0.93
CHD4-210ENST00000544040 PABPN1Q86U42 306 aaKnown RBP eCLIP20.82■□□□□ 0.928e-7■■□□□ 12.7
CHD4-210ENST00000544040 CHGAP10645 457 aaKnown RBP20.81■□□□□ 0.92
CHD4-210ENST00000544040 PLPPR3Q6T4P5 718 aa20.79■□□□□ 0.92
CHD4-210ENST00000544040 TONSLQ96HA7 1378 aa20.74■□□□□ 0.91
CHD4-210ENST00000544040 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.72■□□□□ 0.91
CHD4-210ENST00000544040 TMC1Q8TDI8 760 aa20.69■□□□□ 0.9
CHD4-210ENST00000544040 STAG3Q9UJ98 1225 aa20.68■□□□□ 0.9
CHD4-210ENST00000544040 SCAF1Q9H7N4 1312 aaKnown RBP20.65■□□□□ 0.9
CHD4-210ENST00000544040 CDK11BP21127 795 aaKnown RBP20.63■□□□□ 0.89
CHD4-210ENST00000544040 WDR43Q15061 677 aaKnown RBP eCLIP20.63■□□□□ 0.891e-6■■□□□ 12.6
CHD4-210ENST00000544040 ESF1Q9H501 851 aaKnown RBP20.61■□□□□ 0.89
CHD4-210ENST00000544040 TRIM44Q96DX7 344 aaPredicted RBP20.6■□□□□ 0.89
CHD4-210ENST00000544040 MRS2Q9HD23 443 aa20.59■□□□□ 0.89
CHD4-210ENST00000544040 TPRNQ4KMQ1 711 aa20.58■□□□□ 0.89
CHD4-210ENST00000544040 HIRIP3Q9BW71 556 aaPredicted RBP20.57■□□□□ 0.88
CHD4-210ENST00000544040 NCLP19338 710 aaKnown RBP20.54■□□□□ 0.88
CHD4-210ENST00000544040 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.54■□□□□ 0.883e-8■■■■□ 20.3
CHD4-210ENST00000544040 CHIC2Q9UKJ5 165 aa20.53■□□□□ 0.88
CHD4-210ENST00000544040 SENP3-EIF4A1A0A087X0R7 540 aa20.53■□□□□ 0.88
CHD4-210ENST00000544040 RTN4Q9NQC3 1192 aaKnown RBP20.53■□□□□ 0.88
CHD4-210ENST00000544040 KDM2AQ9Y2K7 1162 aa20.53■□□□□ 0.88
CHD4-210ENST00000544040 MIER1Q8N108 512 aa20.52■□□□□ 0.88
CHD4-210ENST00000544040 CSRNP3Q8WYN3 585 aa20.52■□□□□ 0.88
CHD4-210ENST00000544040 MYH16Q9H6N6 1097 aa20.52■□□□□ 0.88
CHD4-210ENST00000544040 A0A0G2JS52 829 aa20.5■□□□□ 0.87
CHD4-210ENST00000544040 SENP3Q9H4L4 574 aaPredicted RBP20.49■□□□□ 0.87
CHD4-210ENST00000544040 PLEKHG5O94827 1062 aa20.48■□□□□ 0.87
CHD4-210ENST00000544040 BECN1Q14457 450 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms