RNA–Protein interactions for RNA: ENST00000305366.7

TM4SF1-201, Transcript of transmembrane 4 L six family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM4SF1, Length 1,771 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-201ENST00000305366 NISCHQ9Y2I1 1504 aa18.54■□□□□ 0.56
TM4SF1-201ENST00000305366 ABCC9O60706 1549 aa16.8■□□□□ 0.28
TM4SF1-201ENST00000305366 AEBP2Q6ZN18 517 aaPredicted RBP16.6■□□□□ 0.25
TM4SF1-201ENST00000305366 CCDC180Q9P1Z9 1646 aa16.46■□□□□ 0.23
TM4SF1-201ENST00000305366 DCAF8L2P0C7V8 631 aa16.03■□□□□ 0.16
TM4SF1-201ENST00000305366 DNAJC5BQ9UF47 199 aa15.87■□□□□ 0.13
TM4SF1-201ENST00000305366 POTEDQ86YR6 584 aa15.85■□□□□ 0.13
TM4SF1-201ENST00000305366 RB1CC1Q8TDY2 1594 aa15.82■□□□□ 0.12
TM4SF1-201ENST00000305366 PABPN1Q86U42 306 aaKnown RBP eCLIP15.77■□□□□ 0.12
TM4SF1-201ENST00000305366 CHIC1Q5VXU3 224 aa15.72■□□□□ 0.11
TM4SF1-201ENST00000305366 NACADO15069 1562 aa15.68■□□□□ 0.1
TM4SF1-201ENST00000305366 MYO15BQ96JP2 1530 aa15.39■□□□□ 0.05
TM4SF1-201ENST00000305366 BICRAQ9NZM4 1560 aa15.35■□□□□ 0.05
TM4SF1-201ENST00000305366 ZCCHC6Q5VYS8 1495 aaKnown RBP15.32■□□□□ 0.04
TM4SF1-201ENST00000305366 UNC13AQ9UPW8 1703 aa15.31■□□□□ 0.04
TM4SF1-201ENST00000305366 SCRIBQ14160 1630 aa15.21■□□□□ 0.02
TM4SF1-201ENST00000305366 DCAF1Q9Y4B6 1507 aa15.2■□□□□ 0.02
TM4SF1-201ENST00000305366 CECR2Q9BXF3 1484 aa15.1■□□□□ 0.01
TM4SF1-201ENST00000305366 CC2D2AQ9P2K1 1620 aa15.05■□□□□ 0
TM4SF1-201ENST00000305366 SHROOM4Q9ULL8 1493 aa15.04■□□□□ -0
TM4SF1-201ENST00000305366 EIF4G1Q04637 1599 aaKnown RBP15□□□□□ -0.01
TM4SF1-201ENST00000305366 SENP3Q9H4L4 574 aaPredicted RBP14.6□□□□□ -0.07
TM4SF1-201ENST00000305366 NCAPD3P42695 1498 aa14.55□□□□□ -0.08
TM4SF1-201ENST00000305366 DNAJC5Q9H3Z4 198 aa14.54□□□□□ -0.08
TM4SF1-201ENST00000305366 ATAD2BQ9ULI0 1458 aa14.52□□□□□ -0.08
TM4SF1-201ENST00000305366 ERCC6Q03468 1493 aa14.5□□□□□ -0.09
TM4SF1-201ENST00000305366 SMARCA4P51532 1647 aa14.42□□□□□ -0.1
TM4SF1-201ENST00000305366 SMARCA2P51531 1590 aa14.42□□□□□ -0.1
TM4SF1-201ENST00000305366 NESP48681 1621 aa14.41□□□□□ -0.1
TM4SF1-201ENST00000305366 BAZ1BQ9UIG0 1483 aaKnown RBP14.39□□□□□ -0.11
TM4SF1-201ENST00000305366 BAZ1AQ9NRL2 1556 aaPredicted RBP14.36□□□□□ -0.11
TM4SF1-201ENST00000305366 CUX2O14529 1486 aa14.36□□□□□ -0.11
TM4SF1-201ENST00000305366 HMGXB3Q12766 1538 aa14.34□□□□□ -0.11
TM4SF1-201ENST00000305366 MROH2BQ7Z745 1585 aa14.33□□□□□ -0.11
TM4SF1-201ENST00000305366 PEG3Q9GZU2 1588 aa14.21□□□□□ -0.13
TM4SF1-201ENST00000305366 PDS5BQ9NTI5 1447 aa14.19□□□□□ -0.14
TM4SF1-201ENST00000305366 CADPSQ9ULU8 1353 aa14.17□□□□□ -0.14
TM4SF1-201ENST00000305366 LAMC3Q9Y6N6 1575 aa14.15□□□□□ -0.14
TM4SF1-201ENST00000305366 WIZO95785 1651 aa14.11□□□□□ -0.15
TM4SF1-201ENST00000305366 PHF23Q9BUL5 403 aaPredicted RBP14.11□□□□□ -0.15
TM4SF1-201ENST00000305366 THOC2Q8NI27 1593 aaKnown RBP14.1□□□□□ -0.15
TM4SF1-201ENST00000305366 RSF1Q96T23 1441 aaPredicted RBP14.05□□□□□ -0.16
TM4SF1-201ENST00000305366 KIF21AQ7Z4S6 1674 aa14.05□□□□□ -0.16
TM4SF1-201ENST00000305366 MRC2Q9UBG0 1479 aa14.03□□□□□ -0.16
TM4SF1-201ENST00000305366 TRIM41Q8WV44 630 aa14.03□□□□□ -0.16
TM4SF1-201ENST00000305366 FANCD2Q9BXW9 1451 aa13.99□□□□□ -0.17
TM4SF1-201ENST00000305366 CEP164Q9UPV0 1460 aa13.98□□□□□ -0.17
TM4SF1-201ENST00000305366 CFTRP13569 1480 aa13.94□□□□□ -0.18
TM4SF1-201ENST00000305366 WDR62O43379 1518 aa13.93□□□□□ -0.18
TM4SF1-201ENST00000305366 TOP2AP11388 1531 aaKnown RBP13.91□□□□□ -0.18
TM4SF1-201ENST00000305366 OSCARQ8IYS5 282 aa13.88□□□□□ -0.19
TM4SF1-201ENST00000305366 URB2Q14146 1524 aaKnown RBP13.85□□□□□ -0.19
TM4SF1-201ENST00000305366 CCDC88BA6NC98 1476 aa13.85□□□□□ -0.19
TM4SF1-201ENST00000305366 ZNF608Q9ULD9 1512 aaPredicted RBP13.74□□□□□ -0.21
TM4SF1-201ENST00000305366 FBLN2P98095 1184 aa13.72□□□□□ -0.21
TM4SF1-201ENST00000305366 IFT140Q96RY7 1462 aa13.7□□□□□ -0.22
TM4SF1-201ENST00000305366 TOPBP1Q92547 1522 aa13.69□□□□□ -0.22
TM4SF1-201ENST00000305366 AQRO60306 1485 aaKnown RBP eCLIP13.65□□□□□ -0.228e-7■■■■■ 28.7
TM4SF1-201ENST00000305366 SUPT5HO00267 1087 aaKnown RBP13.65□□□□□ -0.22
TM4SF1-201ENST00000305366 FOXD1Q16676 465 aa13.64□□□□□ -0.23
TM4SF1-201ENST00000305366 CYB5RLQ6IPT4 315 aa13.63□□□□□ -0.23
TM4SF1-201ENST00000305366 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
TM4SF1-201ENST00000305366 TDRD9Q8NDG6 1382 aaKnown RBP13.61□□□□□ -0.23
TM4SF1-201ENST00000305366 RAD54L2Q9Y4B4 1467 aa13.59□□□□□ -0.23
TM4SF1-201ENST00000305366 SOGA1O94964 1423 aa13.58□□□□□ -0.24
TM4SF1-201ENST00000305366 DNMBPQ6XZF7 1577 aa13.58□□□□□ -0.24
TM4SF1-201ENST00000305366 POLA1P09884 1462 aaPredicted RBP13.56□□□□□ -0.24
TM4SF1-201ENST00000305366 CHMP7Q8WUX9 453 aaPredicted RBP13.54□□□□□ -0.24
TM4SF1-201ENST00000305366 PRDM2Q13029 1718 aa13.54□□□□□ -0.24
TM4SF1-201ENST00000305366 EIF4G3O43432 1585 aaKnown RBP13.54□□□□□ -0.24
TM4SF1-201ENST00000305366 RIMBP3CA6NJZ7 1639 aa13.53□□□□□ -0.24
TM4SF1-201ENST00000305366 RIMBP3BA6NNM3 1639 aa13.53□□□□□ -0.24
TM4SF1-201ENST00000305366 RIMBP3Q9UFD9 1639 aa13.53□□□□□ -0.24
TM4SF1-201ENST00000305366 TRHP20396 242 aaPredicted RBP13.53□□□□□ -0.24
TM4SF1-201ENST00000305366 ARHGEF11O15085 1522 aa13.52□□□□□ -0.24
TM4SF1-201ENST00000305366 MSH5O43196 834 aa13.5□□□□□ -0.25
TM4SF1-201ENST00000305366 TARBP1Q13395 1621 aaKnown RBP13.49□□□□□ -0.25
TM4SF1-201ENST00000305366 FGD5Q6ZNL6 1462 aa13.49□□□□□ -0.25
TM4SF1-201ENST00000305366 SNAPC4Q5SXM2 1469 aa13.46□□□□□ -0.26
TM4SF1-201ENST00000305366 CUX1P39880 1505 aa13.45□□□□□ -0.26
TM4SF1-201ENST00000305366 ARAP1Q96P48 1450 aa13.41□□□□□ -0.26
TM4SF1-201ENST00000305366 CHD1O14646 1710 aa13.4□□□□□ -0.27
TM4SF1-201ENST00000305366 GRIN2BQ13224 1484 aa13.39□□□□□ -0.27
TM4SF1-201ENST00000305366 GAPVD1Q14C86 1478 aa13.36□□□□□ -0.27
TM4SF1-201ENST00000305366 MAGI1Q96QZ7 1491 aaPredicted RBP13.34□□□□□ -0.27
TM4SF1-201ENST00000305366 SYNJ2O15056 1496 aa13.34□□□□□ -0.27
TM4SF1-201ENST00000305366 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
TM4SF1-201ENST00000305366 SYNJ1O43426 1573 aa13.3□□□□□ -0.28
TM4SF1-201ENST00000305366 ABCA10Q8WWZ4 1543 aa13.28□□□□□ -0.28
TM4SF1-201ENST00000305366 CLASP1Q7Z460 1538 aa13.28□□□□□ -0.28
TM4SF1-201ENST00000305366 WDR97A6NE52 1622 aa13.26□□□□□ -0.29
TM4SF1-201ENST00000305366 GRIN2AQ12879 1464 aa13.2□□□□□ -0.3
TM4SF1-201ENST00000305366 ABCA5Q8WWZ7 1642 aa13.19□□□□□ -0.3
TM4SF1-201ENST00000305366 PBRM1Q86U86 1689 aa13.19□□□□□ -0.3
TM4SF1-201ENST00000305366 FHAD1B1AJZ9 1412 aa13.18□□□□□ -0.3
TM4SF1-201ENST00000305366 ERCC6L2Q5T890 1561 aa13.17□□□□□ -0.3
TM4SF1-201ENST00000305366 JPH4Q96JJ6 628 aa13.17□□□□□ -0.3
TM4SF1-201ENST00000305366 TOP2BQ02880 1626 aa13.15□□□□□ -0.3
TM4SF1-201ENST00000305366 SLC24A1O60721 1099 aa13.15□□□□□ -0.3
TM4SF1-201ENST00000305366 NUP160Q12769 1436 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms