Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC8.84□□□□□ -0.997e-8■■■■□ 26.7
UPF1Q92900 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.033e-7■■■■□ 26.7
UPF1Q92900 SEC16A-208ENST00000467838 1988 ntTSL 215.49■□□□□ 0.071e-7■■■■□ 26.7
UPF1Q92900 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.081e-7■■■■□ 26.7
UPF1Q92900 SEC16A-207ENST00000453963 4834 ntAPPRIS ALT2 TSL 1 (best)11.83□□□□□ -0.521e-7■■■■□ 26.7
UPF1Q92900 SEC16A-205ENST00000371706 8093 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.721e-7■■■■□ 26.7
UPF1Q92900 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC10.48□□□□□ -0.731e-7■■■■□ 26.7
UPF1Q92900 SEC16A-204ENST00000313084 3073 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.761e-7■■■■□ 26.7
UPF1Q92900 SEC16A-201ENST00000277537 3910 ntAPPRIS ALT2 TSL 1 (best)9.64□□□□□ -0.871e-7■■■■□ 26.7
UPF1Q92900 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.339e-8■■■■□ 26.7
UPF1Q92900 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC9.76□□□□□ -0.859e-8■■■■□ 26.7
UPF1Q92900 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC8.89□□□□□ -0.999e-8■■■■□ 26.7
UPF1Q92900 ARF4-204ENST00000486310 1601 ntTSL 38.67□□□□□ -1.029e-8■■■■□ 26.7
UPF1Q92900 MGAT4B-216ENST00000520969 1096 ntTSL 330.41■■■□□ 2.463e-9■■■■□ 26.7
UPF1Q92900 MGAT4B-205ENST00000518778 1568 ntTSL 1 (best)27.81■■■□□ 2.043e-9■■■■□ 26.7
UPF1Q92900 MGAT4B-219ENST00000522293 759 ntTSL 319.33■□□□□ 0.683e-9■■■■□ 26.7
UPF1Q92900 MGAT4B-207ENST00000518980 983 ntTSL 59.84□□□□□ -0.833e-9■■■■□ 26.7
UPF1Q92900 CTSH-202ENST00000525807 1122 ntTSL 527.12■■□□□ 1.932e-14■■■■□ 26.6
UPF1Q92900 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.622e-14■■■■□ 26.6
UPF1Q92900 CTSH-213ENST00000533777 2101 ntTSL 1 (best)17.39■□□□□ 0.372e-14■■■■□ 26.6
UPF1Q92900 CTSH-204ENST00000527715 2138 ntTSL 1 (best)13.94□□□□□ -0.182e-14■■■■□ 26.6
UPF1Q92900 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC17.95■□□□□ 0.461e-9■■■■□ 26.6
UPF1Q92900 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC17.49■□□□□ 0.391e-9■■■■□ 26.6
UPF1Q92900 FGFR1-228ENST00000526688 570 ntTSL 320.64■□□□□ 0.895e-8■■■■□ 26.6
UPF1Q92900 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.25■□□□□ 0.835e-8■■■■□ 26.6
UPF1Q92900 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.835e-8■■■■□ 26.6
UPF1Q92900 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.715e-8■■■■□ 26.6
UPF1Q92900 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.73■□□□□ 0.595e-8■■■■□ 26.6
UPF1Q92900 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.445e-8■■■■□ 26.6
UPF1Q92900 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.61■□□□□ 0.095e-8■■■■□ 26.6
UPF1Q92900 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.79□□□□□ -0.045e-8■■■■□ 26.6
UPF1Q92900 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.61□□□□□ -0.075e-8■■■■□ 26.6
UPF1Q92900 FGFR1-211ENST00000425967 5375 ntTSL 1 (best) BASIC12.59□□□□□ -0.395e-8■■■■□ 26.6
UPF1Q92900 FGFR1-227ENST00000526570 5528 ntTSL 1 (best)12.25□□□□□ -0.455e-8■■■■□ 26.6
UPF1Q92900 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC12.1□□□□□ -0.475e-8■■■■□ 26.6
UPF1Q92900 FGFR1-209ENST00000397113 3680 ntAPPRIS ALT1 TSL 2 BASIC10.08□□□□□ -0.85e-8■■■■□ 26.6
UPF1Q92900 ERCC2-204ENST00000391945 4153 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.23e-7■■■■□ 26.6
UPF1Q92900 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.81□□□□□ -1.482e-8■■■■□ 26.6
UPF1Q92900 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.652e-8■■■■□ 26.6
UPF1Q92900 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.824e-8■■■■□ 26.6
UPF1Q92900 CBFA2T3-204ENST00000563640 664 ntTSL 222.77■■□□□ 1.242e-6■■■■□ 26.6
UPF1Q92900 CBFA2T3-210ENST00000569464 1327 ntTSL 1 (best)19.47■□□□□ 0.712e-6■■■■□ 26.6
UPF1Q92900 CBFA2T3-209ENST00000569443 469 ntTSL 516.83■□□□□ 0.282e-6■■■■□ 26.6
UPF1Q92900 CBFA2T3-203ENST00000562719 539 ntTSL 515.18■□□□□ 0.022e-6■■■■□ 26.6
UPF1Q92900 KLHL12-203ENST00000367261 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.431e-6■■■■□ 26.6
UPF1Q92900 KLHL12-202ENST00000367259 2257 ntTSL 2 BASIC11.16□□□□□ -0.621e-6■■■■□ 26.6
UPF1Q92900 ZNF317-206ENST00000591508 457 ntTSL 511.93□□□□□ -0.57e-7■■■■□ 26.6
UPF1Q92900 ZNF317-202ENST00000360385 3955 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.987e-7■■■■□ 26.6
UPF1Q92900 ZNF317-201ENST00000247956 4073 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.117e-7■■■■□ 26.6
UPF1Q92900 ZNF317-205ENST00000591278 4186 ntTSL 1 (best)7.01□□□□□ -1.297e-7■■■■□ 26.6
UPF1Q92900 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.179e-7■■■■□ 26.6
UPF1Q92900 RFFL-212ENST00000584655 4039 ntTSL 2 BASIC11.61□□□□□ -0.559e-7■■■■□ 26.6
UPF1Q92900 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.449e-7■■■■□ 26.6
UPF1Q92900 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.261e-6■■■■□ 26.6
UPF1Q92900 ATP6V0E2-205ENST00000464683 495 ntTSL 523.52■■□□□ 1.361e-6■■■■□ 26.6
UPF1Q92900 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.838e-7■■■■□ 26.6
UPF1Q92900 SLC5A6-213ENST00000461757 2307 ntTSL 219.83■□□□□ 0.766e-7■■■■□ 26.6
UPF1Q92900 SLC5A6-217ENST00000488743 3174 ntTSL 212.92□□□□□ -0.346e-7■■■■□ 26.6
UPF1Q92900 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.626e-7■■■■□ 26.6
UPF1Q92900 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.495e-7■■■■□ 26.6
UPF1Q92900 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.475e-7■■■■□ 26.6
UPF1Q92900 METTL16-208ENST00000576556 1944 ntTSL 223.33■■□□□ 1.333e-8■■■■□ 26.6
UPF1Q92900 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.458e-10■■■■□ 26.6
UPF1Q92900 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.67■□□□□ 0.428e-10■■■■□ 26.6
UPF1Q92900 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.09■□□□□ 0.178e-10■■■■□ 26.6
UPF1Q92900 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC14.48□□□□□ -0.098e-10■■■■□ 26.6
UPF1Q92900 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC16.91■□□□□ 0.39e-14■■■■□ 26.5
UPF1Q92900 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.622e-7■■■■□ 26.5
UPF1Q92900 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC22.72■■□□□ 1.239e-9■■■■□ 26.5
UPF1Q92900 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.939e-9■■■■□ 26.5
UPF1Q92900 GGA2-208ENST00000566685 571 ntTSL 422.53■■□□□ 1.21e-9■■■■□ 26.5
UPF1Q92900 GGA2-213ENST00000568922 1807 ntTSL 215.19■□□□□ 0.021e-9■■■■□ 26.5
UPF1Q92900 GGA2-210ENST00000567339 293 ntTSL 313.13□□□□□ -0.311e-9■■■■□ 26.5
UPF1Q92900 NAXD-203ENST00000470164 2377 ntTSL 217.61■□□□□ 0.412e-7■■■■□ 26.5
UPF1Q92900 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.24■□□□□ 0.352e-7■■■■□ 26.5
UPF1Q92900 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.052e-7■■■■□ 26.5
UPF1Q92900 COG4-205ENST00000526700 1978 ntTSL 514.87□□□□□ -0.032e-7■■■■□ 26.5
UPF1Q92900 COG4-202ENST00000393612 2756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.272e-7■■■■□ 26.5
UPF1Q92900 COG4-213ENST00000565715 575 ntTSL 212.37□□□□□ -0.432e-7■■■■□ 26.5
UPF1Q92900 COG4-201ENST00000323786 2833 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.462e-7■■■■□ 26.5
UPF1Q92900 COG4-211ENST00000564415 3000 ntTSL 511.8□□□□□ -0.522e-7■■■■□ 26.5
UPF1Q92900 COG4-203ENST00000482252 2953 ntTSL 210.85□□□□□ -0.672e-7■■■■□ 26.5
UPF1Q92900 COG4-207ENST00000530314 3488 ntTSL 1 (best)10.42□□□□□ -0.742e-7■■■■□ 26.5
UPF1Q92900 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.324e-7■■■■□ 26.5
UPF1Q92900 SLC35A4-201ENST00000323146 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.44e-7■■■■□ 26.5
UPF1Q92900 SLC35A4-202ENST00000514199 3617 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.694e-7■■■■□ 26.5
UPF1Q92900 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.113e-9■■■■□ 26.5
UPF1Q92900 TFE3-204ENST00000493583 3279 ntTSL 214.03□□□□□ -0.163e-9■■■■□ 26.5
UPF1Q92900 SERPIND1-201ENST00000215727 2437 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.852e-10■■■■□ 26.5
UPF1Q92900 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.383e-8■■■■□ 26.5
UPF1Q92900 PEF1-205ENST00000478502 750 ntTSL 216.85■□□□□ 0.294e-10■■■■□ 26.5
UPF1Q92900 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.789e-8■■■■□ 26.5
UPF1Q92900 LAMTOR1-203ENST00000535872 899 ntTSL 520.81■□□□□ 0.929e-8■■■■□ 26.5
UPF1Q92900 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC19.87■□□□□ 0.779e-8■■■■□ 26.5
UPF1Q92900 LAMTOR1-202ENST00000535107 619 ntTSL 3 BASIC16.6■□□□□ 0.259e-8■■■■□ 26.5
UPF1Q92900 LAMTOR1-204ENST00000538404 1346 ntTSL 2 BASIC15.81■□□□□ 0.129e-8■■■■□ 26.5
UPF1Q92900 LAMTOR1-207ENST00000544594 849 ntTSL 311.22□□□□□ -0.619e-8■■■■□ 26.5
UPF1Q92900 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.454e-8■■■■□ 26.5
UPF1Q92900 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 14e-8■■■■□ 26.5
UPF1Q92900 GATD1-207ENST00000526650 457 ntTSL 322.81■■□□□ 1.242e-10■■■■□ 26.4
Retrieved 100 of 15,879 protein–RNA pairs in 212.6 ms