RNA–Protein interactions for RNA: ENST00000493583.5

TFE3-204, Transcript of transcription factor binding to IGHM enhancer 3, humanhuman

TSL 2

Gene TFE3, Length 3,279 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TFE3-204ENST00000493583 NISCHQ9Y2I1 1504 aa26.87■■□□□ 1.89
TFE3-204ENST00000493583 SHROOM4Q9ULL8 1493 aa24.23■■□□□ 1.47
TFE3-204ENST00000493583 DCAF8L2P0C7V8 631 aa24.06■■□□□ 1.44
TFE3-204ENST00000493583 SUPT5HO00267 1087 aaKnown RBP24.01■■□□□ 1.43
TFE3-204ENST00000493583 PCGF6Q9BYE7 350 aa23.29■■□□□ 1.32
TFE3-204ENST00000493583 PPARGC1BQ86YN6 1023 aaKnown RBP23.29■■□□□ 1.32
TFE3-204ENST00000493583 HRCP23327 699 aa23.02■■□□□ 1.28
TFE3-204ENST00000493583 MYO15BQ96JP2 1530 aa22.95■■□□□ 1.26
TFE3-204ENST00000493583 CHIC1Q5VXU3 224 aa22.92■■□□□ 1.26
TFE3-204ENST00000493583 LOC105371045A0A1W2PR82 267 aa22.87■■□□□ 1.25
TFE3-204ENST00000493583 EHMT2Q96KQ7 1210 aa22.81■■□□□ 1.24
TFE3-204ENST00000493583 CCDC180Q9P1Z9 1646 aa22.6■■□□□ 1.21
TFE3-204ENST00000493583 ZCCHC6Q5VYS8 1495 aaKnown RBP22.54■■□□□ 1.2
TFE3-204ENST00000493583 FAM9AQ8IZU1 332 aaPredicted RBP22.42■■□□□ 1.18
TFE3-204ENST00000493583 ABCC9O60706 1549 aa22.16■■□□□ 1.14
TFE3-204ENST00000493583 TRIM26Q12899 539 aaPredicted RBP22.06■■□□□ 1.12
TFE3-204ENST00000493583 TTBK1Q5TCY1 1321 aaPredicted RBP22.06■■□□□ 1.12
TFE3-204ENST00000493583 PELP1Q8IZL8 1130 aaKnown RBP21.97■■□□□ 1.11
TFE3-204ENST00000493583 SCRIBQ14160 1630 aa21.88■■□□□ 1.09
TFE3-204ENST00000493583 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
TFE3-204ENST00000493583 SCAF1Q9H7N4 1312 aaKnown RBP21.86■■□□□ 1.09
TFE3-204ENST00000493583 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.74■■□□□ 1.07
TFE3-204ENST00000493583 DCAF1Q9Y4B6 1507 aa21.74■■□□□ 1.07
TFE3-204ENST00000493583 PABPN1Q86U42 306 aaKnown RBP eCLIP21.56■■□□□ 1.04
TFE3-204ENST00000493583 CCER1Q8TC90 406 aaPredicted RBP21.53■■□□□ 1.04
TFE3-204ENST00000493583 ZEB1P37275 1124 aaPredicted RBP21.46■■□□□ 1.03
TFE3-204ENST00000493583 NEUROD1Q13562 356 aa21.46■■□□□ 1.03
TFE3-204ENST00000493583 RSF1Q96T23 1441 aaPredicted RBP21.45■■□□□ 1.02
TFE3-204ENST00000493583 CECR2Q9BXF3 1484 aa21.44■■□□□ 1.02
TFE3-204ENST00000493583 YTHDC1Q96MU7 727 aaKnown RBP21.44■■□□□ 1.02
TFE3-204ENST00000493583 GTF3C3Q9Y5Q9 886 aa21.35■■□□□ 1.01
TFE3-204ENST00000493583 RB1CC1Q8TDY2 1594 aa21.25■□□□□ 0.99
TFE3-204ENST00000493583 ACIN1Q9UKV3 1341 aaKnown RBP21.23■□□□□ 0.99
TFE3-204ENST00000493583 DIEXFQ68CQ4 756 aaKnown RBP21.23■□□□□ 0.99
TFE3-204ENST00000493583 RANGAP1P46060 587 aaPredicted RBP21.21■□□□□ 0.99
TFE3-204ENST00000493583 NACADO15069 1562 aa21.2■□□□□ 0.98
TFE3-204ENST00000493583 MROH2BQ7Z745 1585 aa21.15■□□□□ 0.98
TFE3-204ENST00000493583 MYT1Q01538 1121 aa21.13■□□□□ 0.97
TFE3-204ENST00000493583 WIZO95785 1651 aa21.02■□□□□ 0.96
TFE3-204ENST00000493583 HNRNPUL2Q1KMD3 747 aaKnown RBP21.01■□□□□ 0.95
TFE3-204ENST00000493583 UBTFP17480 764 aaKnown RBP20.97■□□□□ 0.95
TFE3-204ENST00000493583 CENPBP07199 599 aaPredicted RBP20.96■□□□□ 0.95
TFE3-204ENST00000493583 MIER1Q8N108 512 aa20.82■□□□□ 0.92
TFE3-204ENST00000493583 ABCC8Q09428 1581 aa20.77■□□□□ 0.92
TFE3-204ENST00000493583 ZNF316A6NFI3 1004 aaPredicted RBP20.72■□□□□ 0.91
TFE3-204ENST00000493583 UNC13AQ9UPW8 1703 aa20.67■□□□□ 0.9
TFE3-204ENST00000493583 CCDC88BA6NC98 1476 aa20.63■□□□□ 0.89
TFE3-204ENST00000493583 SOGA1O94964 1423 aa20.62■□□□□ 0.89
TFE3-204ENST00000493583 BAZ1AQ9NRL2 1556 aaPredicted RBP20.57■□□□□ 0.88
TFE3-204ENST00000493583 RUSC2Q8N2Y8 1516 aa20.55■□□□□ 0.88
TFE3-204ENST00000493583 CEP162Q5TB80 1403 aa20.55■□□□□ 0.88
TFE3-204ENST00000493583 ITGAEP38570 1179 aa20.51■□□□□ 0.87
TFE3-204ENST00000493583 BICRAQ9NZM4 1560 aa20.5■□□□□ 0.87
TFE3-204ENST00000493583 CSRNP3Q8WYN3 585 aa20.5■□□□□ 0.87
TFE3-204ENST00000493583 BCANQ96GW7 911 aa20.44■□□□□ 0.86
TFE3-204ENST00000493583 SMARCA4P51532 1647 aa20.43■□□□□ 0.86
TFE3-204ENST00000493583 APLP2Q06481 763 aa20.42■□□□□ 0.86
TFE3-204ENST00000493583 TOP2AP11388 1531 aaKnown RBP20.33■□□□□ 0.85
TFE3-204ENST00000493583 KCNH8Q96L42 1107 aa20.33■□□□□ 0.85
TFE3-204ENST00000493583 SMARCA2P51531 1590 aa20.33■□□□□ 0.84
TFE3-204ENST00000493583 ATP1B4Q9UN42 357 aaPredicted RBP20.25■□□□□ 0.83
TFE3-204ENST00000493583 WRNQ14191 1432 aaPredicted RBP eCLIP20.25■□□□□ 0.83
TFE3-204ENST00000493583 HIRIP3Q9BW71 556 aaPredicted RBP20.23■□□□□ 0.83
TFE3-204ENST00000493583 TNIKQ9UKE5 1360 aa20.21■□□□□ 0.83
TFE3-204ENST00000493583 BAZ1BQ9UIG0 1483 aaKnown RBP20.21■□□□□ 0.83
TFE3-204ENST00000493583 SUPT16HQ9Y5B9 1047 aaKnown RBP20.19■□□□□ 0.82
TFE3-204ENST00000493583 BCL11AQ9H165 835 aa20.18■□□□□ 0.82
TFE3-204ENST00000493583 P3H3Q8IVL6 736 aa20.13■□□□□ 0.81
TFE3-204ENST00000493583 ATAD2BQ9ULI0 1458 aa20.13■□□□□ 0.81
TFE3-204ENST00000493583 KANK4Q5T7N3 995 aaPredicted RBP20.11■□□□□ 0.81
TFE3-204ENST00000493583 CLIP1P30622 1438 aa20.09■□□□□ 0.81
TFE3-204ENST00000493583 EIF4G1Q04637 1599 aaKnown RBP20.04■□□□□ 0.8
TFE3-204ENST00000493583 SYNJ1O43426 1573 aa20.01■□□□□ 0.79
TFE3-204ENST00000493583 GOLGA3Q08378 1498 aa20.01■□□□□ 0.79
TFE3-204ENST00000493583 TSHZ2Q9NRE2 1034 aa20■□□□□ 0.79
TFE3-204ENST00000493583 DDX10Q13206 875 aaKnown RBP20■□□□□ 0.79
TFE3-204ENST00000493583 TRIM52Q96A61 297 aa19.98■□□□□ 0.79
TFE3-204ENST00000493583 RAPGEF2Q9Y4G8 1499 aa19.98■□□□□ 0.79
TFE3-204ENST00000493583 FKBP8Q14318 412 aa19.98■□□□□ 0.79
TFE3-204ENST00000493583 SIN3AQ96ST3 1273 aa19.92■□□□□ 0.78
TFE3-204ENST00000493583 DNAJC5BQ9UF47 199 aa19.89■□□□□ 0.77
TFE3-204ENST00000493583 IRX6P78412 446 aaPredicted RBP19.88■□□□□ 0.77
TFE3-204ENST00000493583 DHX57Q6P158 1386 aaKnown RBP19.87■□□□□ 0.77
TFE3-204ENST00000493583 FAM50AQ14320 339 aaKnown RBP19.84■□□□□ 0.77
TFE3-204ENST00000493583 ARID3CA6NKF2 412 aa19.84■□□□□ 0.77
TFE3-204ENST00000493583 CNGB1Q14028 1251 aaPredicted RBP19.84■□□□□ 0.77
TFE3-204ENST00000493583 VPS8Q8N3P4 1428 aa19.83■□□□□ 0.76
TFE3-204ENST00000493583 CEP164Q9UPV0 1460 aa19.8■□□□□ 0.76
TFE3-204ENST00000493583 ANP32EQ9BTT0 268 aa19.78■□□□□ 0.76
TFE3-204ENST00000493583 EEA1Q15075 1411 aa19.76■□□□□ 0.75
TFE3-204ENST00000493583 SENP3-EIF4A1A0A087X0R7 540 aa19.76■□□□□ 0.75
TFE3-204ENST00000493583 CC2D2AQ9P2K1 1620 aa19.75■□□□□ 0.75
TFE3-204ENST00000493583 PEG3Q9GZU2 1588 aa19.68■□□□□ 0.74
TFE3-204ENST00000493583 KIF21BO75037 1637 aa19.67■□□□□ 0.74
TFE3-204ENST00000493583 NCAPD3P42695 1498 aa19.65■□□□□ 0.74
TFE3-204ENST00000493583 CUX2O14529 1486 aa19.64■□□□□ 0.74
TFE3-204ENST00000493583 NEFLP07196 543 aa19.64■□□□□ 0.73
TFE3-204ENST00000493583 CUX1P39880 1505 aa19.61■□□□□ 0.73
TFE3-204ENST00000493583 RBM19Q9Y4C8 960 aaKnown RBP19.61■□□□□ 0.73
TFE3-204ENST00000493583 KIF27Q86VH2 1401 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms