RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 NISCHQ9Y2I1 1504 aa20.95■□□□□ 0.94
RFFL-212ENST00000584655 DCAF8L2P0C7V8 631 aa19.47■□□□□ 0.71
RFFL-212ENST00000584655 SHROOM4Q9ULL8 1493 aa19.11■□□□□ 0.65
RFFL-212ENST00000584655 SUPT5HO00267 1087 aaKnown RBP18.64■□□□□ 0.57
RFFL-212ENST00000584655 EHMT2Q96KQ7 1210 aa17.91■□□□□ 0.46
RFFL-212ENST00000584655 ABCC9O60706 1549 aa17.87■□□□□ 0.45
RFFL-212ENST00000584655 FAM9AQ8IZU1 332 aaPredicted RBP17.5■□□□□ 0.39
RFFL-212ENST00000584655 PABPN1Q86U42 306 aaKnown RBP eCLIP17.49■□□□□ 0.39
RFFL-212ENST00000584655 ZCCHC6Q5VYS8 1495 aaKnown RBP17.47■□□□□ 0.39
RFFL-212ENST00000584655 CCDC180Q9P1Z9 1646 aa17.29■□□□□ 0.36
RFFL-212ENST00000584655 LOC105371045A0A1W2PR82 267 aa17.24■□□□□ 0.35
RFFL-212ENST00000584655 SCRIBQ14160 1630 aa17.23■□□□□ 0.35
RFFL-212ENST00000584655 CHIC1Q5VXU3 224 aa17.19■□□□□ 0.34
RFFL-212ENST00000584655 TTBK1Q5TCY1 1321 aaPredicted RBP17.09■□□□□ 0.33
RFFL-212ENST00000584655 PPARGC1BQ86YN6 1023 aaKnown RBP17.03■□□□□ 0.32
RFFL-212ENST00000584655 TRIM41Q8WV44 630 aa16.99■□□□□ 0.31
RFFL-212ENST00000584655 RANGAP1P46060 587 aaPredicted RBP16.99■□□□□ 0.31
RFFL-212ENST00000584655 PCGF6Q9BYE7 350 aa16.87■□□□□ 0.29
RFFL-212ENST00000584655 CECR2Q9BXF3 1484 aa16.86■□□□□ 0.29
RFFL-212ENST00000584655 MYO15BQ96JP2 1530 aa16.82■□□□□ 0.28
RFFL-212ENST00000584655 RSF1Q96T23 1441 aaPredicted RBP16.71■□□□□ 0.26
RFFL-212ENST00000584655 MROH2BQ7Z745 1585 aa16.53■□□□□ 0.24
RFFL-212ENST00000584655 DCAF1Q9Y4B6 1507 aa16.51■□□□□ 0.23
RFFL-212ENST00000584655 UBTFP17480 764 aaKnown RBP16.49■□□□□ 0.23
RFFL-212ENST00000584655 RB1CC1Q8TDY2 1594 aa16.46■□□□□ 0.23
RFFL-212ENST00000584655 NACADO15069 1562 aa16.45■□□□□ 0.22
RFFL-212ENST00000584655 WIZO95785 1651 aa16.37■□□□□ 0.21
RFFL-212ENST00000584655 ATP1B4Q9UN42 357 aaPredicted RBP16.23■□□□□ 0.19
RFFL-212ENST00000584655 DNAJC5BQ9UF47 199 aa16.19■□□□□ 0.18
RFFL-212ENST00000584655 ABCC8Q09428 1581 aa16.18■□□□□ 0.18
RFFL-212ENST00000584655 CCDC88BA6NC98 1476 aa16.12■□□□□ 0.17
RFFL-212ENST00000584655 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.07■□□□□ 0.16
RFFL-212ENST00000584655 BAZ1AQ9NRL2 1556 aaPredicted RBP16.07■□□□□ 0.16
RFFL-212ENST00000584655 SOGA1O94964 1423 aa16.06■□□□□ 0.16
RFFL-212ENST00000584655 P3H3Q8IVL6 736 aa16.06■□□□□ 0.16
RFFL-212ENST00000584655 ITGAEP38570 1179 aa16.04■□□□□ 0.16
RFFL-212ENST00000584655 HNRNPUL2Q1KMD3 747 aaKnown RBP16.03■□□□□ 0.16
RFFL-212ENST00000584655 CSRNP3Q8WYN3 585 aa16.03■□□□□ 0.16
RFFL-212ENST00000584655 TRIM26Q12899 539 aaPredicted RBP16.02■□□□□ 0.16
RFFL-212ENST00000584655 RUSC2Q8N2Y8 1516 aa16■□□□□ 0.15
RFFL-212ENST00000584655 ARID3CA6NKF2 412 aa15.98■□□□□ 0.15
RFFL-212ENST00000584655 BAZ1BQ9UIG0 1483 aaKnown RBP15.98■□□□□ 0.15
RFFL-212ENST00000584655 APLP2Q06481 763 aa15.96■□□□□ 0.15
RFFL-212ENST00000584655 HRCP23327 699 aa15.95■□□□□ 0.14
RFFL-212ENST00000584655 BICRAQ9NZM4 1560 aa15.95■□□□□ 0.14
RFFL-212ENST00000584655 SMARCA4P51532 1647 aa15.94■□□□□ 0.14
RFFL-212ENST00000584655 CCER1Q8TC90 406 aaPredicted RBP15.93■□□□□ 0.14
RFFL-212ENST00000584655 UNC13AQ9UPW8 1703 aa15.91■□□□□ 0.14
RFFL-212ENST00000584655 ATAD2BQ9ULI0 1458 aa15.88■□□□□ 0.13
RFFL-212ENST00000584655 WRNQ14191 1432 aaPredicted RBP eCLIP15.84■□□□□ 0.13
RFFL-212ENST00000584655 FBLN2P98095 1184 aa15.79■□□□□ 0.12
RFFL-212ENST00000584655 TOP2AP11388 1531 aaKnown RBP15.79■□□□□ 0.12
RFFL-212ENST00000584655 SMARCA2P51531 1590 aa15.78■□□□□ 0.12
RFFL-212ENST00000584655 CEP162Q5TB80 1403 aa15.66■□□□□ 0.1
RFFL-212ENST00000584655 EIF4G1Q04637 1599 aaKnown RBP15.66■□□□□ 0.1
RFFL-212ENST00000584655 NESP48681 1621 aa15.65■□□□□ 0.1
RFFL-212ENST00000584655 FAM50AQ14320 339 aaKnown RBP15.57■□□□□ 0.08
RFFL-212ENST00000584655 TDRD9Q8NDG6 1382 aaKnown RBP15.56■□□□□ 0.08
RFFL-212ENST00000584655 RAPGEF2Q9Y4G8 1499 aa15.55■□□□□ 0.08
RFFL-212ENST00000584655 KANK4Q5T7N3 995 aaPredicted RBP15.53■□□□□ 0.08
RFFL-212ENST00000584655 SYNJ1O43426 1573 aa15.53■□□□□ 0.08
RFFL-212ENST00000584655 CLIP1P30622 1438 aa15.53■□□□□ 0.08
RFFL-212ENST00000584655 CUX2O14529 1486 aa15.5■□□□□ 0.07
RFFL-212ENST00000584655 CADPSQ9ULU8 1353 aa15.47■□□□□ 0.07
RFFL-212ENST00000584655 YTHDC1Q96MU7 727 aaKnown RBP15.47■□□□□ 0.07
RFFL-212ENST00000584655 CC2D2AQ9P2K1 1620 aa15.47■□□□□ 0.07
RFFL-212ENST00000584655 RAD54L2Q9Y4B4 1467 aa15.46■□□□□ 0.07
RFFL-212ENST00000584655 GOLGA3Q08378 1498 aa15.43■□□□□ 0.06
RFFL-212ENST00000584655 NCAPD3P42695 1498 aa15.42■□□□□ 0.06
RFFL-212ENST00000584655 TNIKQ9UKE5 1360 aa15.42■□□□□ 0.06
RFFL-212ENST00000584655 NEUROD1Q13562 356 aa15.4■□□□□ 0.06
RFFL-212ENST00000584655 CNGB1Q14028 1251 aaPredicted RBP15.38■□□□□ 0.05
RFFL-212ENST00000584655 KIF27Q86VH2 1401 aa15.36■□□□□ 0.05
RFFL-212ENST00000584655 CHIC2Q9UKJ5 165 aa15.35■□□□□ 0.05
RFFL-212ENST00000584655 FANCD2Q9BXW9 1451 aa15.34■□□□□ 0.05
RFFL-212ENST00000584655 CARMIL1Q5VZK9 1371 aa15.34■□□□□ 0.05
RFFL-212ENST00000584655 CEP164Q9UPV0 1460 aa15.33■□□□□ 0.04
RFFL-212ENST00000584655 CUX1P39880 1505 aa15.32■□□□□ 0.04
RFFL-212ENST00000584655 HIRIP3Q9BW71 556 aaPredicted RBP15.31■□□□□ 0.04
RFFL-212ENST00000584655 FGD5Q6ZNL6 1462 aa15.29■□□□□ 0.04
RFFL-212ENST00000584655 ZNF777Q9ULD5 760 aaPredicted RBP15.28■□□□□ 0.04
RFFL-212ENST00000584655 ERCC6Q03468 1493 aa15.28■□□□□ 0.04
RFFL-212ENST00000584655 IGF1RP08069 1367 aa15.27■□□□□ 0.03
RFFL-212ENST00000584655 CFTRP13569 1480 aa15.27■□□□□ 0.03
RFFL-212ENST00000584655 ZEB1P37275 1124 aaPredicted RBP15.26■□□□□ 0.03
RFFL-212ENST00000584655 CHMP7Q8WUX9 453 aaPredicted RBP15.25■□□□□ 0.03
RFFL-212ENST00000584655 AQRO60306 1485 aaKnown RBP eCLIP15.23■□□□□ 0.035e-10■■■■■ 39.2
RFFL-212ENST00000584655 EEA1Q15075 1411 aa15.22■□□□□ 0.03
RFFL-212ENST00000584655 FHOD3Q2V2M9 1422 aa15.22■□□□□ 0.03
RFFL-212ENST00000584655 PEG3Q9GZU2 1588 aa15.17■□□□□ 0.02
RFFL-212ENST00000584655 TRIM52Q96A61 297 aa15.17■□□□□ 0.02
RFFL-212ENST00000584655 RRP7BPQ9NSQ0 103 aa15.17■□□□□ 0.02
RFFL-212ENST00000584655 DIEXFQ68CQ4 756 aaKnown RBP15.16■□□□□ 0.02
RFFL-212ENST00000584655 SIN3AQ96ST3 1273 aa15.14■□□□□ 0.01
RFFL-212ENST00000584655 VPS8Q8N3P4 1428 aa15.14■□□□□ 0.01
RFFL-212ENST00000584655 ARAP1Q96P48 1450 aa15.13■□□□□ 0.01
RFFL-212ENST00000584655 PDS5BQ9NTI5 1447 aa15.12■□□□□ 0.01
RFFL-212ENST00000584655 HMGXB3Q12766 1538 aa15.11■□□□□ 0.01
RFFL-212ENST00000584655 POLR3GLQ9BT43 218 aa15.1■□□□□ 0.01
RFFL-212ENST00000584655 POLA1P09884 1462 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms