RNA–Protein interactions for RNA: ENST00000467838.2

SEC16A-208, Transcript of SEC16 homolog A, endoplasmic reticulum export factor, humanhuman

TSL 2

Gene SEC16A, Length 1,988 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC16A-208ENST00000467838 NISCHQ9Y2I1 1504 aa29.73■■■□□ 2.35
SEC16A-208ENST00000467838 CCDC180Q9P1Z9 1646 aa25.83■■□□□ 1.73
SEC16A-208ENST00000467838 ZCCHC6Q5VYS8 1495 aaKnown RBP25.27■■□□□ 1.64
SEC16A-208ENST00000467838 SHROOM4Q9ULL8 1493 aa25.16■■□□□ 1.62
SEC16A-208ENST00000467838 SUPT5HO00267 1087 aaKnown RBP24.76■■□□□ 1.55
SEC16A-208ENST00000467838 DCAF1Q9Y4B6 1507 aa24.56■■□□□ 1.52
SEC16A-208ENST00000467838 ABCC9O60706 1549 aa24.54■■□□□ 1.52
SEC16A-208ENST00000467838 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
SEC16A-208ENST00000467838 MYO15BQ96JP2 1530 aa24.44■■□□□ 1.5
SEC16A-208ENST00000467838 CHIC1Q5VXU3 224 aa24.4■■□□□ 1.5
SEC16A-208ENST00000467838 HRCP23327 699 aa24.12■■□□□ 1.45
SEC16A-208ENST00000467838 NACADO15069 1562 aa24.08■■□□□ 1.44
SEC16A-208ENST00000467838 RB1CC1Q8TDY2 1594 aa23.9■■□□□ 1.42
SEC16A-208ENST00000467838 SCRIBQ14160 1630 aa23.78■■□□□ 1.4
SEC16A-208ENST00000467838 PCGF6Q9BYE7 350 aa23.74■■□□□ 1.39
SEC16A-208ENST00000467838 RSF1Q96T23 1441 aaPredicted RBP23.57■■□□□ 1.36
SEC16A-208ENST00000467838 LOC105371045A0A1W2PR82 267 aa23.51■■□□□ 1.35
SEC16A-208ENST00000467838 UNC13AQ9UPW8 1703 aa23.44■■□□□ 1.34
SEC16A-208ENST00000467838 TRIM26Q12899 539 aaPredicted RBP23.39■■□□□ 1.33
SEC16A-208ENST00000467838 PPARGC1BQ86YN6 1023 aaKnown RBP23.37■■□□□ 1.33
SEC16A-208ENST00000467838 BICRAQ9NZM4 1560 aa23.18■■□□□ 1.3
SEC16A-208ENST00000467838 TRIM41Q8WV44 630 aa23.14■■□□□ 1.29
SEC16A-208ENST00000467838 PABPN1Q86U42 306 aaKnown RBP eCLIP23.13■■□□□ 1.29
SEC16A-208ENST00000467838 ZEB1P37275 1124 aaPredicted RBP23.07■■□□□ 1.28
SEC16A-208ENST00000467838 MROH2BQ7Z745 1585 aa23.06■■□□□ 1.28
SEC16A-208ENST00000467838 CECR2Q9BXF3 1484 aa23.05■■□□□ 1.28
SEC16A-208ENST00000467838 EIF4G1Q04637 1599 aaKnown RBP22.97■■□□□ 1.27
SEC16A-208ENST00000467838 BAZ1AQ9NRL2 1556 aaPredicted RBP22.97■■□□□ 1.27
SEC16A-208ENST00000467838 WIZO95785 1651 aa22.95■■□□□ 1.26
SEC16A-208ENST00000467838 FAM9AQ8IZU1 332 aaPredicted RBP22.8■■□□□ 1.24
SEC16A-208ENST00000467838 SMARCA4P51532 1647 aa22.76■■□□□ 1.23
SEC16A-208ENST00000467838 TOP2AP11388 1531 aaKnown RBP22.7■■□□□ 1.22
SEC16A-208ENST00000467838 WRNQ14191 1432 aaPredicted RBP eCLIP22.56■■□□□ 1.2
SEC16A-208ENST00000467838 SMARCA2P51531 1590 aa22.56■■□□□ 1.2
SEC16A-208ENST00000467838 CCDC88BA6NC98 1476 aa22.49■■□□□ 1.19
SEC16A-208ENST00000467838 PEG3Q9GZU2 1588 aa22.47■■□□□ 1.19
SEC16A-208ENST00000467838 ABCC8Q09428 1581 aa22.47■■□□□ 1.19
SEC16A-208ENST00000467838 EHMT2Q96KQ7 1210 aa22.45■■□□□ 1.18
SEC16A-208ENST00000467838 EEA1Q15075 1411 aa22.41■■□□□ 1.18
SEC16A-208ENST00000467838 ATAD2BQ9ULI0 1458 aa22.41■■□□□ 1.18
SEC16A-208ENST00000467838 CEP162Q5TB80 1403 aa22.37■■□□□ 1.17
SEC16A-208ENST00000467838 TNIKQ9UKE5 1360 aa22.36■■□□□ 1.17
SEC16A-208ENST00000467838 PELP1Q8IZL8 1130 aaKnown RBP22.32■■□□□ 1.16
SEC16A-208ENST00000467838 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
SEC16A-208ENST00000467838 BAZ1BQ9UIG0 1483 aaKnown RBP22.29■■□□□ 1.16
SEC16A-208ENST00000467838 SOGA1O94964 1423 aa22.28■■□□□ 1.16
SEC16A-208ENST00000467838 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.26■■□□□ 1.15
SEC16A-208ENST00000467838 CCER1Q8TC90 406 aaPredicted RBP22.24■■□□□ 1.15
SEC16A-208ENST00000467838 NCAPD3P42695 1498 aa22.22■■□□□ 1.15
SEC16A-208ENST00000467838 GOLGA3Q08378 1498 aa22.2■■□□□ 1.14
SEC16A-208ENST00000467838 CC2D2AQ9P2K1 1620 aa22.2■■□□□ 1.14
SEC16A-208ENST00000467838 HMGXB3Q12766 1538 aa22.18■■□□□ 1.14
SEC16A-208ENST00000467838 RUSC2Q8N2Y8 1516 aa22.15■■□□□ 1.14
SEC16A-208ENST00000467838 CSRNP3Q8WYN3 585 aa22.14■■□□□ 1.14
SEC16A-208ENST00000467838 KIF21BO75037 1637 aa22.13■■□□□ 1.13
SEC16A-208ENST00000467838 ACIN1Q9UKV3 1341 aaKnown RBP22.06■■□□□ 1.12
SEC16A-208ENST00000467838 CEP164Q9UPV0 1460 aa22.05■■□□□ 1.12
SEC16A-208ENST00000467838 SYNJ1O43426 1573 aa22.04■■□□□ 1.12
SEC16A-208ENST00000467838 DIEXFQ68CQ4 756 aaKnown RBP22■■□□□ 1.11
SEC16A-208ENST00000467838 UBTFP17480 764 aaKnown RBP21.95■■□□□ 1.1
SEC16A-208ENST00000467838 NEUROD1Q13562 356 aa21.94■■□□□ 1.1
SEC16A-208ENST00000467838 VPS8Q8N3P4 1428 aa21.89■■□□□ 1.1
SEC16A-208ENST00000467838 CLIP1P30622 1438 aa21.88■■□□□ 1.09
SEC16A-208ENST00000467838 CENPBP07199 599 aaPredicted RBP21.88■■□□□ 1.09
SEC16A-208ENST00000467838 TTBK1Q5TCY1 1321 aaPredicted RBP21.85■■□□□ 1.09
SEC16A-208ENST00000467838 ZNF316A6NFI3 1004 aaPredicted RBP21.82■■□□□ 1.08
SEC16A-208ENST00000467838 TOP2BQ02880 1626 aa21.82■■□□□ 1.08
SEC16A-208ENST00000467838 BIVM-ERCC5R4GMW8 1640 aa21.79■■□□□ 1.08
SEC16A-208ENST00000467838 RAPGEF2Q9Y4G8 1499 aa21.77■■□□□ 1.08
SEC16A-208ENST00000467838 ERICH3Q5RHP9 1530 aa21.74■■□□□ 1.07
SEC16A-208ENST00000467838 DNAJC5BQ9UF47 199 aa21.71■■□□□ 1.07
SEC16A-208ENST00000467838 GTF3C3Q9Y5Q9 886 aa21.71■■□□□ 1.07
SEC16A-208ENST00000467838 CFTRP13569 1480 aa21.71■■□□□ 1.07
SEC16A-208ENST00000467838 CADPSQ9ULU8 1353 aa21.65■■□□□ 1.06
SEC16A-208ENST00000467838 PRXQ9BXM0 1461 aa21.64■■□□□ 1.05
SEC16A-208ENST00000467838 PRDM2Q13029 1718 aa21.61■■□□□ 1.05
SEC16A-208ENST00000467838 HNRNPUL2Q1KMD3 747 aaKnown RBP21.59■■□□□ 1.05
SEC16A-208ENST00000467838 CLSPNQ9HAW4 1339 aa21.58■■□□□ 1.05
SEC16A-208ENST00000467838 ARAP1Q96P48 1450 aa21.57■■□□□ 1.04
SEC16A-208ENST00000467838 APLP2Q06481 763 aa21.54■■□□□ 1.04
SEC16A-208ENST00000467838 NESP48681 1621 aa21.51■■□□□ 1.03
SEC16A-208ENST00000467838 LAMC3Q9Y6N6 1575 aa21.49■■□□□ 1.03
SEC16A-208ENST00000467838 CUX1P39880 1505 aa21.48■■□□□ 1.03
SEC16A-208ENST00000467838 MIER1Q8N108 512 aa21.47■■□□□ 1.03
SEC16A-208ENST00000467838 RRBP1Q9P2E9 1410 aaKnown RBP21.46■■□□□ 1.03
SEC16A-208ENST00000467838 CUX2O14529 1486 aa21.46■■□□□ 1.03
SEC16A-208ENST00000467838 DHX57Q6P158 1386 aaKnown RBP21.45■■□□□ 1.03
SEC16A-208ENST00000467838 FANCD2Q9BXW9 1451 aa21.43■■□□□ 1.02
SEC16A-208ENST00000467838 KIF27Q86VH2 1401 aa21.4■■□□□ 1.02
SEC16A-208ENST00000467838 YTHDC1Q96MU7 727 aaKnown RBP21.33■■□□□ 1.01
SEC16A-208ENST00000467838 PDS5BQ9NTI5 1447 aa21.33■■□□□ 1
SEC16A-208ENST00000467838 ARHGAP35Q9NRY4 1499 aa21.32■■□□□ 1
SEC16A-208ENST00000467838 KANK4Q5T7N3 995 aaPredicted RBP21.3■■□□□ 1
SEC16A-208ENST00000467838 MAP3K1Q13233 1512 aa21.29■■□□□ 1
SEC16A-208ENST00000467838 MYT1Q01538 1121 aa21.28■■□□□ 1
SEC16A-208ENST00000467838 KIF21AQ7Z4S6 1674 aa21.26■□□□□ 0.99
SEC16A-208ENST00000467838 RANGAP1P46060 587 aaPredicted RBP21.25■□□□□ 0.99
SEC16A-208ENST00000467838 CCNB3Q8WWL7 1395 aa21.25■□□□□ 0.99
SEC16A-208ENST00000467838 DNMBPQ6XZF7 1577 aa21.21■□□□□ 0.99
SEC16A-208ENST00000467838 TIAM1Q13009 1591 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms