RNA–Protein interactions for RNA: ENST00000249014.4

CDC42EP1-201, Transcript of CDC42 effector protein 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CDC42EP1, Length 2,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP1-201ENST00000249014 NISCHQ9Y2I1 1504 aa41.54■■■■■ 4.24
CDC42EP1-201ENST00000249014 CCDC180Q9P1Z9 1646 aa35.55■■■■□ 3.28
CDC42EP1-201ENST00000249014 ZCCHC6Q5VYS8 1495 aaKnown RBP35.1■■■■□ 3.21
CDC42EP1-201ENST00000249014 SHROOM4Q9ULL8 1493 aa35.02■■■■□ 3.2
CDC42EP1-201ENST00000249014 DCAF8L2P0C7V8 631 aa34.28■■■■□ 3.08
CDC42EP1-201ENST00000249014 SUPT5HO00267 1087 aaKnown RBP34.19■■■■□ 3.06
CDC42EP1-201ENST00000249014 DCAF1Q9Y4B6 1507 aa34.16■■■■□ 3.06
CDC42EP1-201ENST00000249014 MYO15BQ96JP2 1530 aa33.28■■■□□ 2.92
CDC42EP1-201ENST00000249014 CHIC1Q5VXU3 224 aa33.19■■■□□ 2.9
CDC42EP1-201ENST00000249014 SCRIBQ14160 1630 aa33.15■■■□□ 2.9
CDC42EP1-201ENST00000249014 ABCC9O60706 1549 aa33.08■■■□□ 2.89
CDC42EP1-201ENST00000249014 NACADO15069 1562 aa32.88■■■□□ 2.85
CDC42EP1-201ENST00000249014 RSF1Q96T23 1441 aaPredicted RBP32.72■■■□□ 2.83
CDC42EP1-201ENST00000249014 CECR2Q9BXF3 1484 aa32.37■■■□□ 2.77
CDC42EP1-201ENST00000249014 RB1CC1Q8TDY2 1594 aa32.37■■■□□ 2.77
CDC42EP1-201ENST00000249014 MROH2BQ7Z745 1585 aa32.26■■■□□ 2.75
CDC42EP1-201ENST00000249014 LOC105371045A0A1W2PR82 267 aa32.14■■■□□ 2.74
CDC42EP1-201ENST00000249014 WIZO95785 1651 aa32.1■■■□□ 2.73
CDC42EP1-201ENST00000249014 UNC13AQ9UPW8 1703 aa31.99■■■□□ 2.71
CDC42EP1-201ENST00000249014 BAZ1AQ9NRL2 1556 aaPredicted RBP31.93■■■□□ 2.7
CDC42EP1-201ENST00000249014 TRIM41Q8WV44 630 aa31.91■■■□□ 2.7
CDC42EP1-201ENST00000249014 PCGF6Q9BYE7 350 aa31.79■■■□□ 2.68
CDC42EP1-201ENST00000249014 SMARCA4P51532 1647 aa31.72■■■□□ 2.67
CDC42EP1-201ENST00000249014 HRCP23327 699 aa31.65■■■□□ 2.66
CDC42EP1-201ENST00000249014 EIF4G1Q04637 1599 aaKnown RBP31.61■■■□□ 2.65
CDC42EP1-201ENST00000249014 TOP2AP11388 1531 aaKnown RBP31.6■■■□□ 2.65
CDC42EP1-201ENST00000249014 FAM9AQ8IZU1 332 aaPredicted RBP31.57■■■□□ 2.64
CDC42EP1-201ENST00000249014 BICRAQ9NZM4 1560 aa31.54■■■□□ 2.64
CDC42EP1-201ENST00000249014 PABPN1Q86U42 306 aaKnown RBP eCLIP31.43■■■□□ 2.62
CDC42EP1-201ENST00000249014 SMARCA2P51531 1590 aa31.42■■■□□ 2.62
CDC42EP1-201ENST00000249014 CCDC88BA6NC98 1476 aa31.42■■■□□ 2.62
CDC42EP1-201ENST00000249014 TRIM26Q12899 539 aaPredicted RBP31.32■■■□□ 2.6
CDC42EP1-201ENST00000249014 EHMT2Q96KQ7 1210 aa31.26■■■□□ 2.59
CDC42EP1-201ENST00000249014 ABCC8Q09428 1581 aa31.23■■■□□ 2.59
CDC42EP1-201ENST00000249014 PEG3Q9GZU2 1588 aa31.17■■■□□ 2.58
CDC42EP1-201ENST00000249014 PPARGC1BQ86YN6 1023 aaKnown RBP30.99■■■□□ 2.55
CDC42EP1-201ENST00000249014 ATAD2BQ9ULI0 1458 aa30.93■■■□□ 2.54
CDC42EP1-201ENST00000249014 SOGA1O94964 1423 aa30.85■■■□□ 2.53
CDC42EP1-201ENST00000249014 BAZ1BQ9UIG0 1483 aaKnown RBP30.81■■■□□ 2.52
CDC42EP1-201ENST00000249014 WRNQ14191 1432 aaPredicted RBP eCLIP30.73■■■□□ 2.51
CDC42EP1-201ENST00000249014 RUSC2Q8N2Y8 1516 aa30.73■■■□□ 2.51
CDC42EP1-201ENST00000249014 EEA1Q15075 1411 aa30.69■■■□□ 2.5
CDC42EP1-201ENST00000249014 SYNJ1O43426 1573 aa30.65■■■□□ 2.5
CDC42EP1-201ENST00000249014 CSRNP3Q8WYN3 585 aa30.62■■■□□ 2.49
CDC42EP1-201ENST00000249014 CEP162Q5TB80 1403 aa30.58■■■□□ 2.49
CDC42EP1-201ENST00000249014 TNIKQ9UKE5 1360 aa30.57■■■□□ 2.48
CDC42EP1-201ENST00000249014 ZEB1P37275 1124 aaPredicted RBP30.48■■■□□ 2.47
CDC42EP1-201ENST00000249014 GOLGA3Q08378 1498 aa30.45■■■□□ 2.47
CDC42EP1-201ENST00000249014 UBTFP17480 764 aaKnown RBP30.42■■■□□ 2.46
CDC42EP1-201ENST00000249014 HMGXB3Q12766 1538 aa30.41■■■□□ 2.46
CDC42EP1-201ENST00000249014 NCAPD3P42695 1498 aa30.4■■■□□ 2.46
CDC42EP1-201ENST00000249014 KIF21BO75037 1637 aa30.34■■■□□ 2.45
CDC42EP1-201ENST00000249014 CEP164Q9UPV0 1460 aa30.32■■■□□ 2.44
CDC42EP1-201ENST00000249014 TOP2BQ02880 1626 aa30.32■■■□□ 2.44
CDC42EP1-201ENST00000249014 BIVM-ERCC5R4GMW8 1640 aa30.25■■■□□ 2.43
CDC42EP1-201ENST00000249014 TTBK1Q5TCY1 1321 aaPredicted RBP30.19■■■□□ 2.42
CDC42EP1-201ENST00000249014 RAPGEF2Q9Y4G8 1499 aa30.13■■■□□ 2.41
CDC42EP1-201ENST00000249014 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.08■■■□□ 2.41
CDC42EP1-201ENST00000249014 CFTRP13569 1480 aa30.07■■■□□ 2.4
CDC42EP1-201ENST00000249014 CLIP1P30622 1438 aa30.06■■■□□ 2.4
CDC42EP1-201ENST00000249014 CUX1P39880 1505 aa30.06■■■□□ 2.4
CDC42EP1-201ENST00000249014 CCER1Q8TC90 406 aaPredicted RBP29.97■■■□□ 2.39
CDC42EP1-201ENST00000249014 PRDM2Q13029 1718 aa29.94■■■□□ 2.38
CDC42EP1-201ENST00000249014 VPS8Q8N3P4 1428 aa29.93■■■□□ 2.38
CDC42EP1-201ENST00000249014 PRXQ9BXM0 1461 aa29.91■■■□□ 2.38
CDC42EP1-201ENST00000249014 ERICH3Q5RHP9 1530 aa29.9■■■□□ 2.38
CDC42EP1-201ENST00000249014 RANGAP1P46060 587 aaPredicted RBP29.82■■■□□ 2.36
CDC42EP1-201ENST00000249014 KIF27Q86VH2 1401 aa29.81■■■□□ 2.36
CDC42EP1-201ENST00000249014 CC2D2AQ9P2K1 1620 aa29.79■■■□□ 2.36
CDC42EP1-201ENST00000249014 CADPSQ9ULU8 1353 aa29.75■■■□□ 2.35
CDC42EP1-201ENST00000249014 ARAP1Q96P48 1450 aa29.67■■■□□ 2.34
CDC42EP1-201ENST00000249014 APLP2Q06481 763 aa29.66■■■□□ 2.34
CDC42EP1-201ENST00000249014 CUX2O14529 1486 aa29.57■■■□□ 2.32
CDC42EP1-201ENST00000249014 HNRNPUL2Q1KMD3 747 aaKnown RBP29.56■■■□□ 2.32
CDC42EP1-201ENST00000249014 FGD5Q6ZNL6 1462 aa29.55■■■□□ 2.32
CDC42EP1-201ENST00000249014 IGF1RP08069 1367 aa29.51■■■□□ 2.31
CDC42EP1-201ENST00000249014 FANCD2Q9BXW9 1451 aa29.47■■■□□ 2.31
CDC42EP1-201ENST00000249014 ARHGAP35Q9NRY4 1499 aa29.46■■■□□ 2.31
CDC42EP1-201ENST00000249014 KANK4Q5T7N3 995 aaPredicted RBP29.4■■■□□ 2.3
CDC42EP1-201ENST00000249014 CARMIL1Q5VZK9 1371 aa29.36■■■□□ 2.29
CDC42EP1-201ENST00000249014 NESP48681 1621 aa29.35■■■□□ 2.29
CDC42EP1-201ENST00000249014 DNMBPQ6XZF7 1577 aa29.34■■■□□ 2.29
CDC42EP1-201ENST00000249014 TOPBP1Q92547 1522 aa29.27■■■□□ 2.28
CDC42EP1-201ENST00000249014 RAD54L2Q9Y4B4 1467 aa29.26■■■□□ 2.27
CDC42EP1-201ENST00000249014 POLA1P09884 1462 aaPredicted RBP29.24■■■□□ 2.27
CDC42EP1-201ENST00000249014 DIEXFQ68CQ4 756 aaKnown RBP29.23■■■□□ 2.27
CDC42EP1-201ENST00000249014 ABCA10Q8WWZ4 1543 aa29.22■■■□□ 2.27
CDC42EP1-201ENST00000249014 RRBP1Q9P2E9 1410 aaKnown RBP29.2■■■□□ 2.27
CDC42EP1-201ENST00000249014 LAMC3Q9Y6N6 1575 aa29.16■■■□□ 2.26
CDC42EP1-201ENST00000249014 ZNF316A6NFI3 1004 aaPredicted RBP29.12■■■□□ 2.25
CDC42EP1-201ENST00000249014 TIAM1Q13009 1591 aa29.11■■■□□ 2.25
CDC42EP1-201ENST00000249014 URB2Q14146 1524 aaKnown RBP29.09■■■□□ 2.25
CDC42EP1-201ENST00000249014 MAP3K1Q13233 1512 aa29.08■■■□□ 2.25
CDC42EP1-201ENST00000249014 WDR97A6NE52 1622 aa29.05■■■□□ 2.24
CDC42EP1-201ENST00000249014 CCNB3Q8WWL7 1395 aa29.05■■■□□ 2.24
CDC42EP1-201ENST00000249014 CUL7Q14999 1698 aa29.05■■■□□ 2.24
CDC42EP1-201ENST00000249014 DHX57Q6P158 1386 aaKnown RBP29.04■■■□□ 2.24
CDC42EP1-201ENST00000249014 DNAJC5BQ9UF47 199 aa29.01■■■□□ 2.23
CDC42EP1-201ENST00000249014 PCF11O94913 1555 aaKnown RBP28.99■■■□□ 2.23
CDC42EP1-201ENST00000249014 FHAD1B1AJZ9 1412 aa28.98■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms