RNA–Protein interactions for RNA: ENST00000315869.7

TFE3-201, Transcript of transcription factor binding to IGHM enhancer 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TFE3, Length 3,415 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TFE3-201ENST00000315869 NISCHQ9Y2I1 1504 aa30.53■■■□□ 2.48
TFE3-201ENST00000315869 DCAF8L2P0C7V8 631 aa26.32■■□□□ 1.8
TFE3-201ENST00000315869 SHROOM4Q9ULL8 1493 aa26.27■■□□□ 1.8
TFE3-201ENST00000315869 CCDC180Q9P1Z9 1646 aa25.93■■□□□ 1.74
TFE3-201ENST00000315869 SUPT5HO00267 1087 aaKnown RBP25.74■■□□□ 1.71
TFE3-201ENST00000315869 ZCCHC6Q5VYS8 1495 aaKnown RBP25.63■■□□□ 1.69
TFE3-201ENST00000315869 ABCC9O60706 1549 aa25.21■■□□□ 1.63
TFE3-201ENST00000315869 DCAF1Q9Y4B6 1507 aa24.73■■□□□ 1.55
TFE3-201ENST00000315869 CHIC1Q5VXU3 224 aa24.71■■□□□ 1.55
TFE3-201ENST00000315869 SCRIBQ14160 1630 aa24.7■■□□□ 1.54
TFE3-201ENST00000315869 PCGF6Q9BYE7 350 aa24.62■■□□□ 1.53
TFE3-201ENST00000315869 MYO15BQ96JP2 1530 aa24.48■■□□□ 1.51
TFE3-201ENST00000315869 HRCP23327 699 aa24.45■■□□□ 1.51
TFE3-201ENST00000315869 LOC105371045A0A1W2PR82 267 aa24.29■■□□□ 1.48
TFE3-201ENST00000315869 NACADO15069 1562 aa24.26■■□□□ 1.47
TFE3-201ENST00000315869 PPARGC1BQ86YN6 1023 aaKnown RBP24.23■■□□□ 1.47
TFE3-201ENST00000315869 PABPN1Q86U42 306 aaKnown RBP eCLIP24.19■■□□□ 1.46
TFE3-201ENST00000315869 CECR2Q9BXF3 1484 aa24.1■■□□□ 1.45
TFE3-201ENST00000315869 RB1CC1Q8TDY2 1594 aa24.08■■□□□ 1.45
TFE3-201ENST00000315869 RSF1Q96T23 1441 aaPredicted RBP24.05■■□□□ 1.44
TFE3-201ENST00000315869 EHMT2Q96KQ7 1210 aa24■■□□□ 1.43
TFE3-201ENST00000315869 FAM9AQ8IZU1 332 aaPredicted RBP23.92■■□□□ 1.42
TFE3-201ENST00000315869 MROH2BQ7Z745 1585 aa23.85■■□□□ 1.41
TFE3-201ENST00000315869 TRIM26Q12899 539 aaPredicted RBP23.76■■□□□ 1.39
TFE3-201ENST00000315869 TRIM41Q8WV44 630 aa23.74■■□□□ 1.39
TFE3-201ENST00000315869 WIZO95785 1651 aa23.68■■□□□ 1.38
TFE3-201ENST00000315869 UNC13AQ9UPW8 1703 aa23.65■■□□□ 1.38
TFE3-201ENST00000315869 BICRAQ9NZM4 1560 aa23.47■■□□□ 1.35
TFE3-201ENST00000315869 BAZ1AQ9NRL2 1556 aaPredicted RBP23.45■■□□□ 1.34
TFE3-201ENST00000315869 SMARCA4P51532 1647 aa23.35■■□□□ 1.33
TFE3-201ENST00000315869 ZEB1P37275 1124 aaPredicted RBP23.31■■□□□ 1.32
TFE3-201ENST00000315869 TTBK1Q5TCY1 1321 aaPredicted RBP23.24■■□□□ 1.31
TFE3-201ENST00000315869 CCDC88BA6NC98 1476 aa23.19■■□□□ 1.3
TFE3-201ENST00000315869 TOP2AP11388 1531 aaKnown RBP23.12■■□□□ 1.29
TFE3-201ENST00000315869 ABCC8Q09428 1581 aa23.07■■□□□ 1.28
TFE3-201ENST00000315869 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.05■■□□□ 1.28
TFE3-201ENST00000315869 CCER1Q8TC90 406 aaPredicted RBP23.04■■□□□ 1.28
TFE3-201ENST00000315869 SMARCA2P51531 1590 aa23.03■■□□□ 1.28
TFE3-201ENST00000315869 ATAD2BQ9ULI0 1458 aa22.99■■□□□ 1.27
TFE3-201ENST00000315869 BAZ1BQ9UIG0 1483 aaKnown RBP22.95■■□□□ 1.26
TFE3-201ENST00000315869 SCAF1Q9H7N4 1312 aaKnown RBP22.8■■□□□ 1.24
TFE3-201ENST00000315869 EIF4G1Q04637 1599 aaKnown RBP22.79■■□□□ 1.24
TFE3-201ENST00000315869 SOGA1O94964 1423 aa22.76■■□□□ 1.23
TFE3-201ENST00000315869 UBTFP17480 764 aaKnown RBP22.75■■□□□ 1.23
TFE3-201ENST00000315869 RANGAP1P46060 587 aaPredicted RBP22.72■■□□□ 1.23
TFE3-201ENST00000315869 RUSC2Q8N2Y8 1516 aa22.71■■□□□ 1.23
TFE3-201ENST00000315869 PEG3Q9GZU2 1588 aa22.7■■□□□ 1.23
TFE3-201ENST00000315869 WRNQ14191 1432 aaPredicted RBP eCLIP22.65■■□□□ 1.22
TFE3-201ENST00000315869 DIEXFQ68CQ4 756 aaKnown RBP22.59■■□□□ 1.21
TFE3-201ENST00000315869 CSRNP3Q8WYN3 585 aa22.56■■□□□ 1.2
TFE3-201ENST00000315869 PELP1Q8IZL8 1130 aaKnown RBP22.54■■□□□ 1.2
TFE3-201ENST00000315869 NCAPD3P42695 1498 aa22.54■■□□□ 1.2
TFE3-201ENST00000315869 DNAJC5BQ9UF47 199 aa22.54■■□□□ 1.2
TFE3-201ENST00000315869 NEUROD1Q13562 356 aa22.51■■□□□ 1.19
TFE3-201ENST00000315869 SYNJ1O43426 1573 aa22.5■■□□□ 1.19
TFE3-201ENST00000315869 ACIN1Q9UKV3 1341 aaKnown RBP22.48■■□□□ 1.19
TFE3-201ENST00000315869 CENPBP07199 599 aaPredicted RBP22.47■■□□□ 1.19
TFE3-201ENST00000315869 HNRNPUL2Q1KMD3 747 aaKnown RBP22.46■■□□□ 1.19
TFE3-201ENST00000315869 YTHDC1Q96MU7 727 aaKnown RBP22.46■■□□□ 1.19
TFE3-201ENST00000315869 CC2D2AQ9P2K1 1620 aa22.43■■□□□ 1.18
TFE3-201ENST00000315869 GTF3C3Q9Y5Q9 886 aa22.41■■□□□ 1.18
TFE3-201ENST00000315869 CEP162Q5TB80 1403 aa22.4■■□□□ 1.18
TFE3-201ENST00000315869 HMGXB3Q12766 1538 aa22.37■■□□□ 1.17
TFE3-201ENST00000315869 APLP2Q06481 763 aa22.33■■□□□ 1.17
TFE3-201ENST00000315869 ZNF316A6NFI3 1004 aaPredicted RBP22.24■■□□□ 1.15
TFE3-201ENST00000315869 NESP48681 1621 aa22.23■■□□□ 1.15
TFE3-201ENST00000315869 TNIKQ9UKE5 1360 aa22.23■■□□□ 1.15
TFE3-201ENST00000315869 CFTRP13569 1480 aa22.23■■□□□ 1.15
TFE3-201ENST00000315869 CADPSQ9ULU8 1353 aa22.22■■□□□ 1.15
TFE3-201ENST00000315869 CUX1P39880 1505 aa22.19■■□□□ 1.14
TFE3-201ENST00000315869 RAPGEF2Q9Y4G8 1499 aa22.16■■□□□ 1.14
TFE3-201ENST00000315869 EEA1Q15075 1411 aa22.15■■□□□ 1.14
TFE3-201ENST00000315869 GOLGA3Q08378 1498 aa22.15■■□□□ 1.14
TFE3-201ENST00000315869 TOP2BQ02880 1626 aa22.12■■□□□ 1.13
TFE3-201ENST00000315869 CEP164Q9UPV0 1460 aa22.06■■□□□ 1.12
TFE3-201ENST00000315869 MIER1Q8N108 512 aa22.05■■□□□ 1.12
TFE3-201ENST00000315869 FANCD2Q9BXW9 1451 aa22.03■■□□□ 1.12
TFE3-201ENST00000315869 CLIP1P30622 1438 aa22.01■■□□□ 1.11
TFE3-201ENST00000315869 CUX2O14529 1486 aa22.01■■□□□ 1.11
TFE3-201ENST00000315869 KIF27Q86VH2 1401 aa21.97■■□□□ 1.11
TFE3-201ENST00000315869 BIVM-ERCC5R4GMW8 1640 aa21.96■■□□□ 1.11
TFE3-201ENST00000315869 FGD5Q6ZNL6 1462 aa21.96■■□□□ 1.11
TFE3-201ENST00000315869 RAD54L2Q9Y4B4 1467 aa21.95■■□□□ 1.1
TFE3-201ENST00000315869 P3H3Q8IVL6 736 aa21.94■■□□□ 1.1
TFE3-201ENST00000315869 ITGAEP38570 1179 aa21.92■■□□□ 1.1
TFE3-201ENST00000315869 KIF21BO75037 1637 aa21.86■■□□□ 1.09
TFE3-201ENST00000315869 ATP1B4Q9UN42 357 aaPredicted RBP21.86■■□□□ 1.09
TFE3-201ENST00000315869 IGF1RP08069 1367 aa21.84■■□□□ 1.09
TFE3-201ENST00000315869 TDRD9Q8NDG6 1382 aaKnown RBP21.82■■□□□ 1.08
TFE3-201ENST00000315869 PRXQ9BXM0 1461 aa21.81■■□□□ 1.08
TFE3-201ENST00000315869 CARMIL1Q5VZK9 1371 aa21.78■■□□□ 1.08
TFE3-201ENST00000315869 VPS8Q8N3P4 1428 aa21.77■■□□□ 1.08
TFE3-201ENST00000315869 TOPBP1Q92547 1522 aa21.76■■□□□ 1.07
TFE3-201ENST00000315869 POLA1P09884 1462 aaPredicted RBP21.75■■□□□ 1.07
TFE3-201ENST00000315869 URB2Q14146 1524 aaKnown RBP21.72■■□□□ 1.07
TFE3-201ENST00000315869 KANK4Q5T7N3 995 aaPredicted RBP21.72■■□□□ 1.07
TFE3-201ENST00000315869 PRDM2Q13029 1718 aa21.71■■□□□ 1.07
TFE3-201ENST00000315869 PDS5BQ9NTI5 1447 aa21.68■■□□□ 1.06
TFE3-201ENST00000315869 ARAP1Q96P48 1450 aa21.66■■□□□ 1.06
TFE3-201ENST00000315869 DNMBPQ6XZF7 1577 aa21.64■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms