RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 DCAF8L2P0C7V8 631 aa24.61■■□□□ 1.53
RFFL-201ENST00000315249 NISCHQ9Y2I1 1504 aa23.11■■□□□ 1.29
RFFL-201ENST00000315249 SUPT5HO00267 1087 aaKnown RBP22.68■■□□□ 1.22
RFFL-201ENST00000315249 SHROOM4Q9ULL8 1493 aa22.55■■□□□ 1.2
RFFL-201ENST00000315249 EHMT2Q96KQ7 1210 aa22.22■■□□□ 1.15
RFFL-201ENST00000315249 FAM9AQ8IZU1 332 aaPredicted RBP21.55■■□□□ 1.04
RFFL-201ENST00000315249 APLP2Q06481 763 aa21.52■■□□□ 1.03
RFFL-201ENST00000315249 RANGAP1P46060 587 aaPredicted RBP21.39■■□□□ 1.01
RFFL-201ENST00000315249 TTBK1Q5TCY1 1321 aaPredicted RBP21.32■■□□□ 1
RFFL-201ENST00000315249 ATP1B4Q9UN42 357 aaPredicted RBP21.24■□□□□ 0.99
RFFL-201ENST00000315249 TRIM41Q8WV44 630 aa20.97■□□□□ 0.95
RFFL-201ENST00000315249 UBTFP17480 764 aaKnown RBP20.87■□□□□ 0.93
RFFL-201ENST00000315249 PCGF6Q9BYE7 350 aa20.67■□□□□ 0.9
RFFL-201ENST00000315249 ABCC9O60706 1549 aa20.65■□□□□ 0.9
RFFL-201ENST00000315249 MYT1LQ9UL68 1186 aa20.64■□□□□ 0.89
RFFL-201ENST00000315249 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.57■□□□□ 0.88
RFFL-201ENST00000315249 HNRNPUL2Q1KMD3 747 aaKnown RBP20.57■□□□□ 0.88
RFFL-201ENST00000315249 PABPN1Q86U42 306 aaKnown RBP eCLIP20.55■□□□□ 0.88
RFFL-201ENST00000315249 PPARGC1BQ86YN6 1023 aaKnown RBP20.39■□□□□ 0.86
RFFL-201ENST00000315249 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.85
RFFL-201ENST00000315249 CCER1Q8TC90 406 aaPredicted RBP20.39■□□□□ 0.85
RFFL-201ENST00000315249 CHIC1Q5VXU3 224 aa20.32■□□□□ 0.84
RFFL-201ENST00000315249 ITGAEP38570 1179 aa20.24■□□□□ 0.83
RFFL-201ENST00000315249 FBLN2P98095 1184 aa20.06■□□□□ 0.8
RFFL-201ENST00000315249 POLR3GLQ9BT43 218 aa20.02■□□□□ 0.8
RFFL-201ENST00000315249 ZEB1P37275 1124 aaPredicted RBP19.92■□□□□ 0.78
RFFL-201ENST00000315249 LOC105371045A0A1W2PR82 267 aa19.88■□□□□ 0.77
RFFL-201ENST00000315249 SLC4A1APQ9BWU0 796 aaKnown RBP19.87■□□□□ 0.77
RFFL-201ENST00000315249 CNGB1Q14028 1251 aaPredicted RBP19.85■□□□□ 0.77
RFFL-201ENST00000315249 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
RFFL-201ENST00000315249 CENPBP07199 599 aaPredicted RBP19.74■□□□□ 0.75
RFFL-201ENST00000315249 FAM50AQ14320 339 aaKnown RBP19.72■□□□□ 0.75
RFFL-201ENST00000315249 ERICH6Q7L0X2 663 aa19.66■□□□□ 0.74
RFFL-201ENST00000315249 NEFLP07196 543 aa19.64■□□□□ 0.74
RFFL-201ENST00000315249 TRIM26Q12899 539 aaPredicted RBP19.63■□□□□ 0.73
RFFL-201ENST00000315249 ARID3CA6NKF2 412 aa19.61■□□□□ 0.73
RFFL-201ENST00000315249 TRIM52Q96A61 297 aa19.59■□□□□ 0.73
RFFL-201ENST00000315249 SCRIBQ14160 1630 aa19.56■□□□□ 0.72
RFFL-201ENST00000315249 P3H3Q8IVL6 736 aa19.53■□□□□ 0.72
RFFL-201ENST00000315249 BCANQ96GW7 911 aa19.51■□□□□ 0.71
RFFL-201ENST00000315249 PLPPR3Q6T4P5 718 aa19.46■□□□□ 0.71
RFFL-201ENST00000315249 ZNF326Q5BKZ1 582 aaKnown RBP19.37■□□□□ 0.69
RFFL-201ENST00000315249 NEUROD1Q13562 356 aa19.37■□□□□ 0.69
RFFL-201ENST00000315249 ZNF777Q9ULD5 760 aaPredicted RBP19.34■□□□□ 0.69
RFFL-201ENST00000315249 ESF1Q9H501 851 aaKnown RBP19.31■□□□□ 0.68
RFFL-201ENST00000315249 NPM1P06748 294 aaKnown RBP eCLIP19.3■□□□□ 0.68
RFFL-201ENST00000315249 SLC24A1O60721 1099 aa19.23■□□□□ 0.67
RFFL-201ENST00000315249 CDK11AQ9UQ88 783 aaPredicted RBP19.14■□□□□ 0.66
RFFL-201ENST00000315249 CCDC180Q9P1Z9 1646 aa19.14■□□□□ 0.65
RFFL-201ENST00000315249 DAXXQ9UER7 740 aaPredicted RBP19.14■□□□□ 0.65
RFFL-201ENST00000315249 STAG3Q9UJ98 1225 aa19.13■□□□□ 0.65
RFFL-201ENST00000315249 HRCP23327 699 aa19.12■□□□□ 0.65
RFFL-201ENST00000315249 CSRNP3Q8WYN3 585 aa19.1■□□□□ 0.65
RFFL-201ENST00000315249 CHGAP10645 457 aaKnown RBP19.09■□□□□ 0.65
RFFL-201ENST00000315249 RB1CC1Q8TDY2 1594 aa19.09■□□□□ 0.65
RFFL-201ENST00000315249 CHMP7Q8WUX9 453 aaPredicted RBP19.08■□□□□ 0.64
RFFL-201ENST00000315249 CLSPNQ9HAW4 1339 aa19■□□□□ 0.63
RFFL-201ENST00000315249 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
RFFL-201ENST00000315249 BCL11AQ9H165 835 aa18.95■□□□□ 0.62
RFFL-201ENST00000315249 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.93■□□□□ 0.62
RFFL-201ENST00000315249 NEFMP07197 916 aa18.89■□□□□ 0.61
RFFL-201ENST00000315249 ERCC6Q03468 1493 aa18.86■□□□□ 0.61
RFFL-201ENST00000315249 KCNH8Q96L42 1107 aa18.85■□□□□ 0.61
RFFL-201ENST00000315249 DIEXFQ68CQ4 756 aaKnown RBP18.84■□□□□ 0.61
RFFL-201ENST00000315249 SENP3Q9H4L4 574 aaPredicted RBP18.83■□□□□ 0.61
RFFL-201ENST00000315249 ZBTB47Q9UFB7 747 aaPredicted RBP18.81■□□□□ 0.6
RFFL-201ENST00000315249 CHIC2Q9UKJ5 165 aa18.81■□□□□ 0.6
RFFL-201ENST00000315249 SCAF1Q9H7N4 1312 aaKnown RBP18.8■□□□□ 0.6
RFFL-201ENST00000315249 ANP32CO43423 234 aa18.8■□□□□ 0.6
RFFL-201ENST00000315249 ARID4BQ4LE39 1312 aaPredicted RBP18.74■□□□□ 0.59
RFFL-201ENST00000315249 CANXP27824 592 aaKnown RBP18.74■□□□□ 0.59
RFFL-201ENST00000315249 NACADO15069 1562 aa18.73■□□□□ 0.59
RFFL-201ENST00000315249 PLEKHG5O94827 1062 aa18.73■□□□□ 0.59
RFFL-201ENST00000315249 TSPY4P0CV99 314 aa18.71■□□□□ 0.59
RFFL-201ENST00000315249 TSPY10P0CW01 314 aa18.71■□□□□ 0.59
RFFL-201ENST00000315249 TRHP20396 242 aaPredicted RBP18.69■□□□□ 0.58
RFFL-201ENST00000315249 BAZ1BQ9UIG0 1483 aaKnown RBP18.69■□□□□ 0.58
RFFL-201ENST00000315249 ZNF316A6NFI3 1004 aaPredicted RBP18.68■□□□□ 0.58
RFFL-201ENST00000315249 A0A0G2JS52 829 aa18.67■□□□□ 0.58
RFFL-201ENST00000315249 MTUS2Q5JR59 1369 aa18.64■□□□□ 0.57
RFFL-201ENST00000315249 KDM2AQ9Y2K7 1162 aa18.62■□□□□ 0.57
RFFL-201ENST00000315249 C14orf37Q86TY3 774 aa18.61■□□□□ 0.57
RFFL-201ENST00000315249 PLEKHD1A6NEE1 506 aa18.57■□□□□ 0.56
RFFL-201ENST00000315249 TONSLQ96HA7 1378 aa18.57■□□□□ 0.56
RFFL-201ENST00000315249 ZBTB7CA1YPR0 619 aa18.57■□□□□ 0.56
RFFL-201ENST00000315249 PPP1R15AO75807 674 aaPredicted RBP18.57■□□□□ 0.56
RFFL-201ENST00000315249 RRP7BPQ9NSQ0 103 aa18.47■□□□□ 0.55
RFFL-201ENST00000315249 MYT1Q01538 1121 aa18.46■□□□□ 0.55
RFFL-201ENST00000315249 HAP1P54257 671 aaPredicted RBP18.44■□□□□ 0.54
RFFL-201ENST00000315249 SALL2Q9Y467 1007 aaPredicted RBP18.43■□□□□ 0.54
RFFL-201ENST00000315249 RSF1Q96T23 1441 aaPredicted RBP18.39■□□□□ 0.53
RFFL-201ENST00000315249 RGL3Q3MIN7 710 aa18.38■□□□□ 0.53
RFFL-201ENST00000315249 CLIP1P30622 1438 aa18.37■□□□□ 0.53
RFFL-201ENST00000315249 CFDP1Q9UEE9 299 aaPredicted RBP18.36■□□□□ 0.53
RFFL-201ENST00000315249 WRNQ14191 1432 aaPredicted RBP eCLIP18.36■□□□□ 0.53
RFFL-201ENST00000315249 MLECQ14165 292 aa18.35■□□□□ 0.53
RFFL-201ENST00000315249 KIF27Q86VH2 1401 aa18.34■□□□□ 0.53
RFFL-201ENST00000315249 EIF4G1Q04637 1599 aaKnown RBP18.33■□□□□ 0.53
RFFL-201ENST00000315249 TMC1Q8TDI8 760 aa18.31■□□□□ 0.52
RFFL-201ENST00000315249 FAM9BQ8IZU0 186 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms