RNA–Protein interactions for RNA: ENST00000566685.1

GGA2-208, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 2, human

TSL 4

Gene GGA2, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GGA2-208	ENST00000566685	NISCH	Q9Y2I1	1504 aa		39.73	■■■■□ 3.95
GGA2-208	ENST00000566685	CCDC180	Q9P1Z9	1646 aa		35.36	■■■■□ 3.25
GGA2-208	ENST00000566685	ABCC9	O60706	1549 aa		34.54	■■■■□ 3.12
GGA2-208	ENST00000566685	RB1CC1	Q8TDY2	1594 aa		33.3	■■■□□ 2.92
GGA2-208	ENST00000566685	NACAD	O15069	1562 aa		33.26	■■■□□ 2.92
GGA2-208	ENST00000566685	DCAF8L2	P0C7V8	631 aa		33.25	■■■□□ 2.91
GGA2-208	ENST00000566685	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.07	■■■□□ 2.88
GGA2-208	ENST00000566685	MYO15B	Q96JP2	1530 aa		33.07	■■■□□ 2.88
GGA2-208	ENST00000566685	DCAF1	Q9Y4B6	1507 aa		32.91	■■■□□ 2.86
GGA2-208	ENST00000566685	UNC13A	Q9UPW8	1703 aa		32.48	■■■□□ 2.79
GGA2-208	ENST00000566685	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.28	■■■□□ 2.76
GGA2-208	ENST00000566685	SCRIB	Q14160	1630 aa		32.2	■■■□□ 2.75
GGA2-208	ENST00000566685	BICRA	Q9NZM4	1560 aa		32.19	■■■□□ 2.74
GGA2-208	ENST00000566685	SHROOM4	Q9ULL8	1493 aa		31.98	■■■□□ 2.71
GGA2-208	ENST00000566685	DNAJC5B	Q9UF47	199 aa		31.65	■■■□□ 2.66
GGA2-208	ENST00000566685	EIF4G1	Q04637	1599 aa	Known RBP	31.39	■■■□□ 2.61
GGA2-208	ENST00000566685	CC2D2A	Q9P2K1	1620 aa		31.26	■■■□□ 2.59
GGA2-208	ENST00000566685	CECR2	Q9BXF3	1484 aa		31.07	■■■□□ 2.56
GGA2-208	ENST00000566685	SMARCA4	P51532	1647 aa		30.83	■■■□□ 2.53
GGA2-208	ENST00000566685	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.83	■■■□□ 2.53
GGA2-208	ENST00000566685	SMARCA2	P51531	1590 aa		30.68	■■■□□ 2.5
GGA2-208	ENST00000566685	NCAPD3	P42695	1498 aa		30.67	■■■□□ 2.5
GGA2-208	ENST00000566685	ATAD2B	Q9ULI0	1458 aa		30.65	■■■□□ 2.5
GGA2-208	ENST00000566685	MROH2B	Q7Z745	1585 aa		30.58	■■■□□ 2.49
GGA2-208	ENST00000566685	PEG3	Q9GZU2	1588 aa		30.54	■■■□□ 2.48
GGA2-208	ENST00000566685	HMGXB3	Q12766	1538 aa		30.52	■■■□□ 2.48
GGA2-208	ENST00000566685	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.44	■■■□□ 2.46
GGA2-208	ENST00000566685	WIZ	O95785	1651 aa		30.26	■■■□□ 2.43
GGA2-208	ENST00000566685	RSF1	Q96T23	1441 aa	Predicted RBP	30.25	■■■□□ 2.43
GGA2-208	ENST00000566685	TOP2A	P11388	1531 aa	Known RBP	29.97	■■■□□ 2.39
GGA2-208	ENST00000566685	LAMC3	Q9Y6N6	1575 aa		29.88	■■■□□ 2.37
GGA2-208	ENST00000566685	NES	P48681	1621 aa		29.85	■■■□□ 2.37
GGA2-208	ENST00000566685	ERCC6	Q03468	1493 aa		29.84	■■■□□ 2.37
GGA2-208	ENST00000566685	CADPS	Q9ULU8	1353 aa		29.77	■■■□□ 2.36
GGA2-208	ENST00000566685	PDS5B	Q9NTI5	1447 aa		29.71	■■■□□ 2.35
GGA2-208	ENST00000566685	CCDC88B	A6NC98	1476 aa		29.6	■■■□□ 2.33
GGA2-208	ENST00000566685	CFTR	P13569	1480 aa		29.59	■■■□□ 2.33
GGA2-208	ENST00000566685	KIF21A	Q7Z4S6	1674 aa		29.54	■■■□□ 2.32
GGA2-208	ENST00000566685	SUPT5H	O00267	1087 aa	Known RBP	29.52	■■■□□ 2.32
GGA2-208	ENST00000566685	CUX2	O14529	1486 aa		29.52	■■■□□ 2.32
GGA2-208	ENST00000566685	THOC2	Q8NI27	1593 aa	Known RBP	29.43	■■■□□ 2.3
GGA2-208	ENST00000566685	FANCD2	Q9BXW9	1451 aa		29.42	■■■□□ 2.3
GGA2-208	ENST00000566685	CEP164	Q9UPV0	1460 aa		29.41	■■■□□ 2.3
GGA2-208	ENST00000566685	PRDM2	Q13029	1718 aa		29.4	■■■□□ 2.3
GGA2-208	ENST00000566685	MRC2	Q9UBG0	1479 aa		29.36	■■■□□ 2.29
GGA2-208	ENST00000566685	WDR62	O43379	1518 aa		29.24	■■■□□ 2.27
GGA2-208	ENST00000566685	URB2	Q14146	1524 aa	Known RBP	29.09	■■■□□ 2.25
GGA2-208	ENST00000566685	ABCC8	Q09428	1581 aa		29.04	■■■□□ 2.24
GGA2-208	ENST00000566685	TOPBP1	Q92547	1522 aa		28.94	■■■□□ 2.22
GGA2-208	ENST00000566685	DNMBP	Q6XZF7	1577 aa		28.92	■■■□□ 2.22
GGA2-208	ENST00000566685	IFT140	Q96RY7	1462 aa		28.79	■■■□□ 2.2
GGA2-208	ENST00000566685	CUX1	P39880	1505 aa		28.7	■■■□□ 2.19
GGA2-208	ENST00000566685	POLA1	P09884	1462 aa	Predicted RBP	28.68	■■■□□ 2.18
GGA2-208	ENST00000566685	FGD5	Q6ZNL6	1462 aa		28.62	■■■□□ 2.17
GGA2-208	ENST00000566685	DNAJC5	Q9H3Z4	198 aa		28.61	■■■□□ 2.17
GGA2-208	ENST00000566685	TARBP1	Q13395	1621 aa	Known RBP	28.61	■■■□□ 2.17
GGA2-208	ENST00000566685	SOGA1	O94964	1423 aa		28.6	■■■□□ 2.17
GGA2-208	ENST00000566685	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.59	■■■□□ 2.17
GGA2-208	ENST00000566685	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.56	■■■□□ 2.16
GGA2-208	ENST00000566685	RAD54L2	Q9Y4B4	1467 aa		28.54	■■■□□ 2.16
GGA2-208	ENST00000566685	EIF4G3	O43432	1585 aa	Known RBP	28.5	■■■□□ 2.15
GGA2-208	ENST00000566685	TOP2B	Q02880	1626 aa		28.49	■■■□□ 2.15
GGA2-208	ENST00000566685	BIVM-ERCC5	R4GMW8	1640 aa		28.48	■■■□□ 2.15
GGA2-208	ENST00000566685	WDR97	A6NE52	1622 aa		28.47	■■■□□ 2.15
GGA2-208	ENST00000566685	AQR	O60306	1485 aa	Known RBP eCLIP	28.46	■■■□□ 2.15
GGA2-208	ENST00000566685	SYNJ1	O43426	1573 aa		28.43	■■■□□ 2.14
GGA2-208	ENST00000566685	TDRD9	Q8NDG6	1382 aa	Known RBP	28.41	■■■□□ 2.14
GGA2-208	ENST00000566685	ABCA10	Q8WWZ4	1543 aa		28.36	■■■□□ 2.13
GGA2-208	ENST00000566685	OSCAR	Q8IYS5	282 aa		28.34	■■■□□ 2.13
GGA2-208	ENST00000566685	GRIN2B	Q13224	1484 aa		28.27	■■■□□ 2.12
GGA2-208	ENST00000566685	GAPVD1	Q14C86	1478 aa		28.27	■■■□□ 2.12
GGA2-208	ENST00000566685	ABCA5	Q8WWZ7	1642 aa		28.23	■■■□□ 2.11
GGA2-208	ENST00000566685	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.21	■■■□□ 2.11
GGA2-208	ENST00000566685	PBRM1	Q86U86	1689 aa		28.2	■■■□□ 2.11
GGA2-208	ENST00000566685	SNAPC4	Q5SXM2	1469 aa		28.2	■■■□□ 2.1
GGA2-208	ENST00000566685	FBLN2	P98095	1184 aa		28.18	■■■□□ 2.1
GGA2-208	ENST00000566685	CHD1	O14646	1710 aa		28.16	■■■□□ 2.1
GGA2-208	ENST00000566685	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.13	■■■□□ 2.09
GGA2-208	ENST00000566685	SYNJ2	O15056	1496 aa		28.09	■■■□□ 2.09
GGA2-208	ENST00000566685	ERICH3	Q5RHP9	1530 aa		28.05	■■■□□ 2.08
GGA2-208	ENST00000566685	KIF27	Q86VH2	1401 aa		28.01	■■■□□ 2.07
GGA2-208	ENST00000566685	ADAMTS12	P58397	1594 aa		27.96	■■■□□ 2.07
GGA2-208	ENST00000566685	FHAD1	B1AJZ9	1412 aa		27.96	■■■□□ 2.07
GGA2-208	ENST00000566685	TRIM41	Q8WV44	630 aa		27.94	■■■□□ 2.06
GGA2-208	ENST00000566685	GRIN2A	Q12879	1464 aa		27.89	■■■□□ 2.06
GGA2-208	ENST00000566685	IGF1R	P08069	1367 aa		27.84	■■■□□ 2.05
GGA2-208	ENST00000566685	CLASP1	Q7Z460	1538 aa		27.83	■■■□□ 2.05
GGA2-208	ENST00000566685	CUL7	Q14999	1698 aa		27.81	■■■□□ 2.04
GGA2-208	ENST00000566685	ARHGEF11	O15085	1522 aa		27.8	■■■□□ 2.04
GGA2-208	ENST00000566685	RIMBP3C	A6NJZ7	1639 aa		27.8	■■■□□ 2.04
GGA2-208	ENST00000566685	RIMBP3B	A6NNM3	1639 aa		27.8	■■■□□ 2.04
GGA2-208	ENST00000566685	RIMBP3	Q9UFD9	1639 aa		27.8	■■■□□ 2.04
GGA2-208	ENST00000566685	NUP160	Q12769	1436 aa		27.76	■■■□□ 2.04
GGA2-208	ENST00000566685	CEP170	Q5SW79	1584 aa		27.71	■■■□□ 2.03
GGA2-208	ENST00000566685	CARMIL1	Q5VZK9	1371 aa		27.7	■■■□□ 2.02
GGA2-208	ENST00000566685	RUSC2	Q8N2Y8	1516 aa		27.62	■■■□□ 2.01
GGA2-208	ENST00000566685	CYB5RL	Q6IPT4	315 aa		27.58	■■■□□ 2.01
GGA2-208	ENST00000566685	SHROOM2	Q13796	1616 aa		27.55	■■■□□ 2
GGA2-208	ENST00000566685	ARAP1	Q96P48	1450 aa		27.54	■■■□□ 2
GGA2-208	ENST00000566685	RAPGEF2	Q9Y4G8	1499 aa		27.54	■■■□□ 2

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