Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.97■□□□□ 0.63
SUMO3P55854 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SUMO3P55854 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.97■□□□□ 0.63
SUMO3P55854 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.97■□□□□ 0.63
SUMO3P55854 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.97■□□□□ 0.63
SUMO3P55854 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SUMO3P55854 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.97■□□□□ 0.63
SUMO3P55854 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SUMO3P55854 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SUMO3P55854 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SUMO3P55854 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.96■□□□□ 0.63
SUMO3P55854 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 AC016769.1-201ENST00000409132 1010 ntBASIC18.96■□□□□ 0.63
SUMO3P55854 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SUMO3P55854 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.96■□□□□ 0.63
SUMO3P55854 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.96■□□□□ 0.63
SUMO3P55854 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.96■□□□□ 0.63
SUMO3P55854 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SUMO3P55854 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SUMO3P55854 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SUMO3P55854 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SUMO3P55854 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.95■□□□□ 0.62
SUMO3P55854 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SUMO3P55854 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SUMO3P55854 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SUMO3P55854 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.95■□□□□ 0.62
SUMO3P55854 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SUMO3P55854 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SUMO3P55854 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.95■□□□□ 0.62
SUMO3P55854 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.95■□□□□ 0.62
SUMO3P55854 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.95■□□□□ 0.62
SUMO3P55854 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.95■□□□□ 0.62
SUMO3P55854 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.95■□□□□ 0.62
SUMO3P55854 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SUMO3P55854 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SUMO3P55854 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SUMO3P55854 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SUMO3P55854 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.94■□□□□ 0.62
SUMO3P55854 AC006015.1-201ENST00000429970 570 ntBASIC18.94■□□□□ 0.62
SUMO3P55854 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SUMO3P55854 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.94■□□□□ 0.62
SUMO3P55854 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.94■□□□□ 0.62
SUMO3P55854 RARRES2P11-201ENST00000635158 484 ntBASIC18.94■□□□□ 0.62
SUMO3P55854 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SUMO3P55854 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SUMO3P55854 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SUMO3P55854 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SUMO3P55854 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SUMO3P55854 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.94■□□□□ 0.62
SUMO3P55854 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SUMO3P55854 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SUMO3P55854 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SUMO3P55854 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.93■□□□□ 0.62
SUMO3P55854 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.93■□□□□ 0.62
SUMO3P55854 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.93■□□□□ 0.62
SUMO3P55854 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.93■□□□□ 0.62
SUMO3P55854 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SUMO3P55854 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SUMO3P55854 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SUMO3P55854 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.92■□□□□ 0.62
SUMO3P55854 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SUMO3P55854 RBM17P2-201ENST00000616397 1405 ntBASIC18.92■□□□□ 0.62
SUMO3P55854 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SUMO3P55854 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SUMO3P55854 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SUMO3P55854 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.92■□□□□ 0.62
SUMO3P55854 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.92■□□□□ 0.62
SUMO3P55854 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms