RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 NISCHQ9Y2I1 1504 aa52.02■■■■■ 5.92
SMCO4-201ENST00000298966 ABCC9O60706 1549 aa47.52■■■■■ 5.2
SMCO4-201ENST00000298966 CCDC180Q9P1Z9 1646 aa46.97■■■■■ 5.11
SMCO4-201ENST00000298966 DNAJC5BQ9UF47 199 aa45.04■■■■■ 4.8
SMCO4-201ENST00000298966 RB1CC1Q8TDY2 1594 aa45.01■■■■■ 4.8
SMCO4-201ENST00000298966 NACADO15069 1562 aa44.54■■■■■ 4.72
SMCO4-201ENST00000298966 DCAF8L2P0C7V8 631 aa44.21■■■■■ 4.67
SMCO4-201ENST00000298966 PABPN1Q86U42 306 aaKnown RBP eCLIP44.14■■■■■ 4.66
SMCO4-201ENST00000298966 UNC13AQ9UPW8 1703 aa43.96■■■■■ 4.63
SMCO4-201ENST00000298966 MYO15BQ96JP2 1530 aa43.72■■■■■ 4.59
SMCO4-201ENST00000298966 BICRAQ9NZM4 1560 aa43.66■■■■■ 4.58
SMCO4-201ENST00000298966 SHROOM4Q9ULL8 1493 aa43.06■■■■■ 4.48
SMCO4-201ENST00000298966 ZCCHC6Q5VYS8 1495 aaKnown RBP42.98■■■■■ 4.47
SMCO4-201ENST00000298966 DCAF1Q9Y4B6 1507 aa42.95■■■■■ 4.47
SMCO4-201ENST00000298966 CC2D2AQ9P2K1 1620 aa42.89■■■■■ 4.46
SMCO4-201ENST00000298966 CECR2Q9BXF3 1484 aa42.87■■■■■ 4.45
SMCO4-201ENST00000298966 SCRIBQ14160 1630 aa42.75■■■■■ 4.43
SMCO4-201ENST00000298966 EIF4G1Q04637 1599 aaKnown RBP42.66■■■■■ 4.42
SMCO4-201ENST00000298966 DNAJC5Q9H3Z4 198 aa41.84■■■■■ 4.29
SMCO4-201ENST00000298966 CUX2O14529 1486 aa41.21■■■■■ 4.19
SMCO4-201ENST00000298966 NCAPD3P42695 1498 aa41.11■■■■■ 4.17
SMCO4-201ENST00000298966 ERCC6Q03468 1493 aa41.11■■■■■ 4.17
SMCO4-201ENST00000298966 ATAD2BQ9ULI0 1458 aa40.9■■■■■ 4.14
SMCO4-201ENST00000298966 SMARCA2P51531 1590 aa40.78■■■■■ 4.12
SMCO4-201ENST00000298966 HMGXB3Q12766 1538 aa40.76■■■■■ 4.12
SMCO4-201ENST00000298966 SMARCA4P51532 1647 aa40.72■■■■■ 4.11
SMCO4-201ENST00000298966 NESP48681 1621 aa40.63■■■■■ 4.09
SMCO4-201ENST00000298966 BAZ1BQ9UIG0 1483 aaKnown RBP40.5■■■■■ 4.07
SMCO4-201ENST00000298966 BAZ1AQ9NRL2 1556 aaPredicted RBP40.44■■■■■ 4.06
SMCO4-201ENST00000298966 THOC2Q8NI27 1593 aaKnown RBP40.35■■■■■ 4.05
SMCO4-201ENST00000298966 PEG3Q9GZU2 1588 aa40.31■■■■■ 4.04
SMCO4-201ENST00000298966 LAMC3Q9Y6N6 1575 aa40.31■■■■■ 4.04
SMCO4-201ENST00000298966 KIF21AQ7Z4S6 1674 aa40.12■■■■■ 4.01
SMCO4-201ENST00000298966 PDS5BQ9NTI5 1447 aa40.1■■■■■ 4.01
SMCO4-201ENST00000298966 MROH2BQ7Z745 1585 aa40.06■■■■■ 4
SMCO4-201ENST00000298966 CADPSQ9ULU8 1353 aa39.84■■■■□ 3.97
SMCO4-201ENST00000298966 TRIM41Q8WV44 630 aa39.8■■■■□ 3.96
SMCO4-201ENST00000298966 MRC2Q9UBG0 1479 aa39.77■■■■□ 3.96
SMCO4-201ENST00000298966 WDR62O43379 1518 aa39.68■■■■□ 3.94
SMCO4-201ENST00000298966 WIZO95785 1651 aa39.57■■■■□ 3.92
SMCO4-201ENST00000298966 CEP164Q9UPV0 1460 aa39.5■■■■□ 3.91
SMCO4-201ENST00000298966 FANCD2Q9BXW9 1451 aa39.39■■■■□ 3.9
SMCO4-201ENST00000298966 OSCARQ8IYS5 282 aa39.25■■■■□ 3.87
SMCO4-201ENST00000298966 CFTRP13569 1480 aa39.24■■■■□ 3.87
SMCO4-201ENST00000298966 URB2Q14146 1524 aaKnown RBP39.09■■■■□ 3.85
SMCO4-201ENST00000298966 TOP2AP11388 1531 aaKnown RBP39.04■■■■□ 3.84
SMCO4-201ENST00000298966 RSF1Q96T23 1441 aaPredicted RBP39.02■■■■□ 3.84
SMCO4-201ENST00000298966 PRDM2Q13029 1718 aa38.86■■■■□ 3.81
SMCO4-201ENST00000298966 RIMBP3CA6NJZ7 1639 aa38.78■■■■□ 3.8
SMCO4-201ENST00000298966 RIMBP3BA6NNM3 1639 aa38.78■■■■□ 3.8
SMCO4-201ENST00000298966 RIMBP3Q9UFD9 1639 aa38.78■■■■□ 3.8
SMCO4-201ENST00000298966 IFT140Q96RY7 1462 aa38.73■■■■□ 3.79
SMCO4-201ENST00000298966 ZNF608Q9ULD9 1512 aaPredicted RBP38.68■■■■□ 3.78
SMCO4-201ENST00000298966 ARHGEF11O15085 1522 aa38.59■■■■□ 3.77
SMCO4-201ENST00000298966 CCDC88BA6NC98 1476 aa38.59■■■■□ 3.77
SMCO4-201ENST00000298966 TOPBP1Q92547 1522 aa38.58■■■■□ 3.77
SMCO4-201ENST00000298966 ABCC8Q09428 1581 aa38.49■■■■□ 3.75
SMCO4-201ENST00000298966 EIF4G3O43432 1585 aaKnown RBP38.48■■■■□ 3.75
SMCO4-201ENST00000298966 DNMBPQ6XZF7 1577 aa38.4■■■■□ 3.74
SMCO4-201ENST00000298966 CYB5RLQ6IPT4 315 aa38.36■■■■□ 3.73
SMCO4-201ENST00000298966 CHD1O14646 1710 aa38.32■■■■□ 3.73
SMCO4-201ENST00000298966 AQRO60306 1485 aaKnown RBP eCLIP38.28■■■■□ 3.72
SMCO4-201ENST00000298966 TARBP1Q13395 1621 aaKnown RBP38.27■■■■□ 3.72
SMCO4-201ENST00000298966 FBLN2P98095 1184 aa38.19■■■■□ 3.7
SMCO4-201ENST00000298966 TRHP20396 242 aaPredicted RBP38.17■■■■□ 3.7
SMCO4-201ENST00000298966 ARAP1Q96P48 1450 aa38.16■■■■□ 3.7
SMCO4-201ENST00000298966 POLA1P09884 1462 aaPredicted RBP38.14■■■■□ 3.7
SMCO4-201ENST00000298966 RAD54L2Q9Y4B4 1467 aa38.01■■■■□ 3.67
SMCO4-201ENST00000298966 SOGA1O94964 1423 aa37.97■■■■□ 3.67
SMCO4-201ENST00000298966 TDRD9Q8NDG6 1382 aaKnown RBP37.96■■■■□ 3.67
SMCO4-201ENST00000298966 SNAPC4Q5SXM2 1469 aa37.89■■■■□ 3.66
SMCO4-201ENST00000298966 WDR97A6NE52 1622 aa37.88■■■■□ 3.65
SMCO4-201ENST00000298966 CLASP1Q7Z460 1538 aa37.84■■■■□ 3.65
SMCO4-201ENST00000298966 FGD5Q6ZNL6 1462 aa37.83■■■■□ 3.65
SMCO4-201ENST00000298966 CHMP7Q8WUX9 453 aaPredicted RBP37.82■■■■□ 3.64
SMCO4-201ENST00000298966 SYNJ1O43426 1573 aa37.81■■■■□ 3.64
SMCO4-201ENST00000298966 MAGI1Q96QZ7 1491 aaPredicted RBP37.78■■■■□ 3.64
SMCO4-201ENST00000298966 GRIN2BQ13224 1484 aa37.71■■■■□ 3.63
SMCO4-201ENST00000298966 CUX1P39880 1505 aa37.68■■■■□ 3.62
SMCO4-201ENST00000298966 SYNJ2O15056 1496 aa37.65■■■■□ 3.62
SMCO4-201ENST00000298966 PBRM1Q86U86 1689 aa37.53■■■■□ 3.6
SMCO4-201ENST00000298966 AEBP2Q6ZN18 517 aaPredicted RBP37.51■■■■□ 3.6
SMCO4-201ENST00000298966 GAPVD1Q14C86 1478 aa37.5■■■■□ 3.59
SMCO4-201ENST00000298966 ABCA10Q8WWZ4 1543 aa37.36■■■■□ 3.57
SMCO4-201ENST00000298966 ABCA5Q8WWZ7 1642 aa37.36■■■■□ 3.57
SMCO4-201ENST00000298966 GRIN2AQ12879 1464 aa37.23■■■■□ 3.55
SMCO4-201ENST00000298966 ERCC6L2Q5T890 1561 aa37.19■■■■□ 3.54
SMCO4-201ENST00000298966 ADAMTS12P58397 1594 aa37.12■■■■□ 3.53
SMCO4-201ENST00000298966 CEP170Q5SW79 1584 aa37.12■■■■□ 3.53
SMCO4-201ENST00000298966 WRNQ14191 1432 aaPredicted RBP eCLIP37.11■■■■□ 3.53
SMCO4-201ENST00000298966 NUP160Q12769 1436 aa37.1■■■■□ 3.53
SMCO4-201ENST00000298966 SHROOM2Q13796 1616 aa37.02■■■■□ 3.52
SMCO4-201ENST00000298966 FHAD1B1AJZ9 1412 aa37.01■■■■□ 3.51
SMCO4-201ENST00000298966 BIVM-ERCC5R4GMW8 1640 aa36.95■■■■□ 3.51
SMCO4-201ENST00000298966 TOP2BQ02880 1626 aa36.94■■■■□ 3.5
SMCO4-201ENST00000298966 SUPT5HO00267 1087 aaKnown RBP36.9■■■■□ 3.5
SMCO4-201ENST00000298966 ERICH3Q5RHP9 1530 aa36.89■■■■□ 3.5
SMCO4-201ENST00000298966 KIF13AQ9H1H9 1805 aa36.86■■■■□ 3.49
SMCO4-201ENST00000298966 PRG4Q92954 1404 aaPredicted RBP36.82■■■■□ 3.48
SMCO4-201ENST00000298966 JPH4Q96JJ6 628 aa36.75■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms