RNA–Protein interactions for RNA: ENST00000347849.7

PTPN18-202, Transcript of protein tyrosine phosphatase, non-receptor type 18, humanhuman

TSL 1 (best) BASIC

Gene PTPN18, Length 2,472 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN18-202ENST00000347849 NISCHQ9Y2I1 1504 aa46.22■■■■■ 4.99
PTPN18-202ENST00000347849 CCDC180Q9P1Z9 1646 aa39.71■■■■□ 3.95
PTPN18-202ENST00000347849 ZCCHC6Q5VYS8 1495 aaKnown RBP38.92■■■■□ 3.82
PTPN18-202ENST00000347849 SHROOM4Q9ULL8 1493 aa38.63■■■■□ 3.77
PTPN18-202ENST00000347849 DCAF8L2P0C7V8 631 aa38.44■■■■□ 3.74
PTPN18-202ENST00000347849 DCAF1Q9Y4B6 1507 aa37.96■■■■□ 3.67
PTPN18-202ENST00000347849 ABCC9O60706 1549 aa37.54■■■■□ 3.6
PTPN18-202ENST00000347849 SUPT5HO00267 1087 aaKnown RBP37.44■■■■□ 3.58
PTPN18-202ENST00000347849 MYO15BQ96JP2 1530 aa37.21■■■■□ 3.55
PTPN18-202ENST00000347849 SCRIBQ14160 1630 aa37.03■■■■□ 3.52
PTPN18-202ENST00000347849 NACADO15069 1562 aa36.94■■■■□ 3.5
PTPN18-202ENST00000347849 RB1CC1Q8TDY2 1594 aa36.51■■■■□ 3.44
PTPN18-202ENST00000347849 RSF1Q96T23 1441 aaPredicted RBP36.22■■■■□ 3.39
PTPN18-202ENST00000347849 CECR2Q9BXF3 1484 aa36.12■■■■□ 3.37
PTPN18-202ENST00000347849 CHIC1Q5VXU3 224 aa36.02■■■■□ 3.36
PTPN18-202ENST00000347849 UNC13AQ9UPW8 1703 aa35.94■■■■□ 3.34
PTPN18-202ENST00000347849 MROH2BQ7Z745 1585 aa35.89■■■■□ 3.34
PTPN18-202ENST00000347849 PABPN1Q86U42 306 aaKnown RBP eCLIP35.7■■■■□ 3.312e-6■■□□□ 13.9
PTPN18-202ENST00000347849 WIZO95785 1651 aa35.61■■■■□ 3.29
PTPN18-202ENST00000347849 BICRAQ9NZM4 1560 aa35.61■■■■□ 3.29
PTPN18-202ENST00000347849 BAZ1AQ9NRL2 1556 aaPredicted RBP35.54■■■■□ 3.28
PTPN18-202ENST00000347849 SMARCA4P51532 1647 aa35.37■■■■□ 3.25
PTPN18-202ENST00000347849 TOP2AP11388 1531 aaKnown RBP35.06■■■■□ 3.2
PTPN18-202ENST00000347849 TRIM41Q8WV44 630 aa34.95■■■■□ 3.19
PTPN18-202ENST00000347849 HRCP23327 699 aa34.9■■■■□ 3.18
PTPN18-202ENST00000347849 LOC105371045A0A1W2PR82 267 aa34.9■■■■□ 3.18
PTPN18-202ENST00000347849 CCDC88BA6NC98 1476 aa34.89■■■■□ 3.18
PTPN18-202ENST00000347849 SMARCA2P51531 1590 aa34.85■■■■□ 3.17
PTPN18-202ENST00000347849 EIF4G1Q04637 1599 aaKnown RBP34.78■■■■□ 3.16
PTPN18-202ENST00000347849 PEG3Q9GZU2 1588 aa34.78■■■■□ 3.16
PTPN18-202ENST00000347849 ATAD2BQ9ULI0 1458 aa34.71■■■■□ 3.15
PTPN18-202ENST00000347849 PCGF6Q9BYE7 350 aa34.63■■■■□ 3.13
PTPN18-202ENST00000347849 FAM9AQ8IZU1 332 aaPredicted RBP34.61■■■■□ 3.13
PTPN18-202ENST00000347849 BAZ1BQ9UIG0 1483 aaKnown RBP34.52■■■■□ 3.12
PTPN18-202ENST00000347849 ABCC8Q09428 1581 aa34.48■■■■□ 3.11
PTPN18-202ENST00000347849 EHMT2Q96KQ7 1210 aa34.31■■■■□ 3.08
PTPN18-202ENST00000347849 PPARGC1BQ86YN6 1023 aaKnown RBP34.23■■■■□ 3.07
PTPN18-202ENST00000347849 NCAPD3P42695 1498 aa34.21■■■■□ 3.07
PTPN18-202ENST00000347849 HMGXB3Q12766 1538 aa34.11■■■■□ 3.05
PTPN18-202ENST00000347849 WRNQ14191 1432 aaPredicted RBP eCLIP34.02■■■■□ 3.04
PTPN18-202ENST00000347849 SOGA1O94964 1423 aa33.99■■■■□ 3.03
PTPN18-202ENST00000347849 SYNJ1O43426 1573 aa33.9■■■■□ 3.02
PTPN18-202ENST00000347849 RUSC2Q8N2Y8 1516 aa33.89■■■■□ 3.02
PTPN18-202ENST00000347849 CC2D2AQ9P2K1 1620 aa33.82■■■■□ 3
PTPN18-202ENST00000347849 TRIM26Q12899 539 aaPredicted RBP33.73■■■□□ 2.99
PTPN18-202ENST00000347849 CSRNP3Q8WYN3 585 aa33.69■■■□□ 2.98
PTPN18-202ENST00000347849 CFTRP13569 1480 aa33.67■■■□□ 2.98
PTPN18-202ENST00000347849 EEA1Q15075 1411 aa33.62■■■□□ 2.97
PTPN18-202ENST00000347849 TOP2BQ02880 1626 aa33.56■■■□□ 2.96
PTPN18-202ENST00000347849 CUX1P39880 1505 aa33.47■■■□□ 2.95
PTPN18-202ENST00000347849 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
PTPN18-202ENST00000347849 BIVM-ERCC5R4GMW8 1640 aa33.45■■■□□ 2.95
PTPN18-202ENST00000347849 UBTFP17480 764 aaKnown RBP33.41■■■□□ 2.94
PTPN18-202ENST00000347849 TNIKQ9UKE5 1360 aa33.39■■■□□ 2.94
PTPN18-202ENST00000347849 CEP162Q5TB80 1403 aa33.36■■■□□ 2.93
PTPN18-202ENST00000347849 GOLGA3Q08378 1498 aa33.34■■■□□ 2.93
PTPN18-202ENST00000347849 DNAJC5BQ9UF47 199 aa33.3■■■□□ 2.92
PTPN18-202ENST00000347849 PRDM2Q13029 1718 aa33.27■■■□□ 2.92
PTPN18-202ENST00000347849 CEP164Q9UPV0 1460 aa33.26■■■□□ 2.91
PTPN18-202ENST00000347849 KIF21BO75037 1637 aa33.22■■■□□ 2.91
PTPN18-202ENST00000347849 RAPGEF2Q9Y4G8 1499 aa33.2■■■□□ 2.91
PTPN18-202ENST00000347849 NESP48681 1621 aa33.2■■■□□ 2.91
PTPN18-202ENST00000347849 ZEB1P37275 1124 aaPredicted RBP33.18■■■□□ 2.9
PTPN18-202ENST00000347849 FANCD2Q9BXW9 1451 aa33.12■■■□□ 2.89
PTPN18-202ENST00000347849 KIF27Q86VH2 1401 aa33.03■■■□□ 2.88
PTPN18-202ENST00000347849 PRXQ9BXM0 1461 aa33.01■■■□□ 2.87
PTPN18-202ENST00000347849 FGD5Q6ZNL6 1462 aa32.99■■■□□ 2.87
PTPN18-202ENST00000347849 RANGAP1P46060 587 aaPredicted RBP32.98■■■□□ 2.87
PTPN18-202ENST00000347849 TTBK1Q5TCY1 1321 aaPredicted RBP32.95■■■□□ 2.87
PTPN18-202ENST00000347849 CLIP1P30622 1438 aa32.93■■■□□ 2.86
PTPN18-202ENST00000347849 CUX2O14529 1486 aa32.93■■■□□ 2.86
PTPN18-202ENST00000347849 ERICH3Q5RHP9 1530 aa32.86■■■□□ 2.85
PTPN18-202ENST00000347849 LAMC3Q9Y6N6 1575 aa32.85■■■□□ 2.85
PTPN18-202ENST00000347849 TOPBP1Q92547 1522 aa32.82■■■□□ 2.84
PTPN18-202ENST00000347849 IGF1RP08069 1367 aa32.81■■■□□ 2.84
PTPN18-202ENST00000347849 DNMBPQ6XZF7 1577 aa32.8■■■□□ 2.84
PTPN18-202ENST00000347849 RAD54L2Q9Y4B4 1467 aa32.79■■■□□ 2.84
PTPN18-202ENST00000347849 POLA1P09884 1462 aaPredicted RBP32.74■■■□□ 2.83
PTPN18-202ENST00000347849 URB2Q14146 1524 aaKnown RBP32.72■■■□□ 2.83
PTPN18-202ENST00000347849 VPS8Q8N3P4 1428 aa32.68■■■□□ 2.82
PTPN18-202ENST00000347849 PDS5BQ9NTI5 1447 aa32.66■■■□□ 2.82
PTPN18-202ENST00000347849 CARMIL1Q5VZK9 1371 aa32.62■■■□□ 2.81
PTPN18-202ENST00000347849 ABCA10Q8WWZ4 1543 aa32.6■■■□□ 2.81
PTPN18-202ENST00000347849 KIF21AQ7Z4S6 1674 aa32.58■■■□□ 2.81
PTPN18-202ENST00000347849 SCAF1Q9H7N4 1312 aaKnown RBP32.56■■■□□ 2.8
PTPN18-202ENST00000347849 ARAP1Q96P48 1450 aa32.56■■■□□ 2.8
PTPN18-202ENST00000347849 ARHGAP35Q9NRY4 1499 aa32.44■■■□□ 2.78
PTPN18-202ENST00000347849 TDRD9Q8NDG6 1382 aaKnown RBP32.44■■■□□ 2.78
PTPN18-202ENST00000347849 PELP1Q8IZL8 1130 aaKnown RBP32.43■■■□□ 2.78
PTPN18-202ENST00000347849 APLP2Q06481 763 aa32.39■■■□□ 2.78
PTPN18-202ENST00000347849 WDR97A6NE52 1622 aa32.38■■■□□ 2.77
PTPN18-202ENST00000347849 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.37■■■□□ 2.77
PTPN18-202ENST00000347849 CCER1Q8TC90 406 aaPredicted RBP32.29■■■□□ 2.76
PTPN18-202ENST00000347849 ABCA5Q8WWZ7 1642 aa32.27■■■□□ 2.76
PTPN18-202ENST00000347849 KANK4Q5T7N3 995 aaPredicted RBP32.26■■■□□ 2.75
PTPN18-202ENST00000347849 GAPVD1Q14C86 1478 aa32.26■■■□□ 2.75
PTPN18-202ENST00000347849 TARBP1Q13395 1621 aaKnown RBP32.23■■■□□ 2.75
PTPN18-202ENST00000347849 MRC2Q9UBG0 1479 aa32.23■■■□□ 2.75
PTPN18-202ENST00000347849 CUL7Q14999 1698 aa32.21■■■□□ 2.75
PTPN18-202ENST00000347849 P3H3Q8IVL6 736 aa32.19■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms