Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SNF8-213ENST00000514929 775 ntTSL 530.1■■■□□ 2.413e-6■■■■■ 38.3
DDX55Q8NHQ9 PLEKHJ1-207ENST00000588356 610 ntTSL 429.63■■■□□ 2.332e-6■■■■■ 38.3
DDX55Q8NHQ9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.213e-6■■■■■ 38.3
DDX55Q8NHQ9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC28.72■■■□□ 2.191e-7■■■■■ 38.3
DDX55Q8NHQ9 SNF8-217ENST00000576353 700 ntTSL 528.58■■■□□ 2.173e-6■■■■■ 38.3
DDX55Q8NHQ9 SNF8-209ENST00000510558 1051 ntTSL 528.34■■■□□ 2.133e-6■■■■■ 38.3
DDX55Q8NHQ9 SNF8-216ENST00000573795 583 ntTSL 527.61■■■□□ 2.013e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-205ENST00000595081 513 ntTSL 227.5■■□□□ 1.993e-6■■■■■ 38.3
DDX55Q8NHQ9 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.4■■□□□ 1.981e-7■■■■■ 38.3
DDX55Q8NHQ9 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.891e-11■■■■■ 38.3
DDX55Q8NHQ9 SETD6-205ENST00000422445 1739 ntTSL 526.7■■□□□ 1.873e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-212ENST00000599454 529 ntTSL 326.58■■□□□ 1.853e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-213ENST00000530391 648 ntTSL 326.09■■□□□ 1.773e-6■■■■■ 38.3
DDX55Q8NHQ9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.743e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-204ENST00000418480 829 ntTSL 525.75■■□□□ 1.713e-6■■■■■ 38.3
DDX55Q8NHQ9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.593e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-211ENST00000470003 593 ntTSL 224.58■■□□□ 1.533e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-220ENST00000627232 1530 ntTSL 524.38■■□□□ 1.493e-6■■■■■ 38.3
DDX55Q8NHQ9 RCCD1-205ENST00000556333 735 ntTSL 1 (best)24.24■■□□□ 1.473e-6■■■■■ 38.3
DDX55Q8NHQ9 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.463e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.11■■□□□ 1.453e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.433e-6■■■■■ 38.3
DDX55Q8NHQ9 RCCD1-208ENST00000557266 2110 ntTSL 1 (best)23.95■■□□□ 1.421e-7■■■■■ 38.3
DDX55Q8NHQ9 ARMC5-207ENST00000564900 2072 ntAPPRIS ALT2 TSL 223.92■■□□□ 1.423e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-203ENST00000593946 1723 ntTSL 1 (best)23.9■■□□□ 1.423e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.413e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-206ENST00000427443 1909 ntTSL 1 (best)23.61■■□□□ 1.373e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.293e-6■■■■■ 38.3
DDX55Q8NHQ9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.09■■□□□ 1.293e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC22.98■■□□□ 1.273e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-213ENST00000492050 706 ntTSL 322.97■■□□□ 1.273e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC22.88■■□□□ 1.253e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.71■■□□□ 1.233e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC22.54■■□□□ 1.23e-6■■■■■ 38.3
DDX55Q8NHQ9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.21e-11■■■■■ 38.3
DDX55Q8NHQ9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.153e-6■■■■■ 38.3
DDX55Q8NHQ9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC22.11■■□□□ 1.133e-6■■■■■ 38.3
DDX55Q8NHQ9 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.083e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-207ENST00000447443 576 ntTSL 521.78■■□□□ 1.083e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-210ENST00000597965 351 ntTSL 521.32■■□□□ 13e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-219ENST00000532780 1194 ntTSL 221.24■□□□□ 0.993e-6■■■■■ 38.3
DDX55Q8NHQ9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.23■□□□□ 0.993e-6■■■■■ 38.3
DDX55Q8NHQ9 SNF8-205ENST00000507302 742 ntTSL 320.95■□□□□ 0.943e-6■■■■■ 38.3
DDX55Q8NHQ9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.911e-7■■■■■ 38.3
DDX55Q8NHQ9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.4■□□□□ 0.863e-6■■■■■ 38.3
DDX55Q8NHQ9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.98■□□□□ 0.793e-6■■■■■ 38.3
DDX55Q8NHQ9 RCCD1-207ENST00000556774 139 ntTSL 319.9■□□□□ 0.783e-6■■■■■ 38.3
DDX55Q8NHQ9 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.753e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-209ENST00000467320 924 ntTSL 219.25■□□□□ 0.673e-6■■■■■ 38.3
DDX55Q8NHQ9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.22■□□□□ 0.673e-6■■■■■ 38.3
DDX55Q8NHQ9 CELSR3-203ENST00000470999 564 ntTSL 419.18■□□□□ 0.663e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.663e-6■■■■■ 38.3
DDX55Q8NHQ9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.593e-6■■■■■ 38.3
DDX55Q8NHQ9 RCCD1-204ENST00000555737 3157 ntTSL 1 (best)18.29■□□□□ 0.521e-7■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.91■□□□□ 0.463e-6■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-212ENST00000567193 915 ntTSL 217.7■□□□□ 0.423e-6■■■■■ 38.3
DDX55Q8NHQ9 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.423e-6■■■■■ 38.3
DDX55Q8NHQ9 SNF8-212ENST00000514089 571 ntTSL 517.4■□□□□ 0.383e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-210ENST00000527387 579 ntTSL 417.39■□□□□ 0.373e-6■■■■■ 38.3
DDX55Q8NHQ9 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.373e-6■■■■■ 38.3
DDX55Q8NHQ9 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.353e-6■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.343e-6■■■■■ 38.3
DDX55Q8NHQ9 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.07■□□□□ 0.323e-6■■■■■ 38.3
DDX55Q8NHQ9 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.33e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-204ENST00000594661 2111 ntTSL 216.82■□□□□ 0.283e-6■■■■■ 38.3
DDX55Q8NHQ9 GYS1-204ENST00000472004 578 ntTSL 316.71■□□□□ 0.273e-6■■■■■ 38.3
DDX55Q8NHQ9 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.263e-6■■■■■ 38.3
DDX55Q8NHQ9 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.253e-6■■■■■ 38.3
DDX55Q8NHQ9 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.243e-6■■■■■ 38.3
DDX55Q8NHQ9 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.243e-6■■■■■ 38.3
DDX55Q8NHQ9 SNF8-206ENST00000509989 677 ntTSL 316.55■□□□□ 0.243e-6■■■■■ 38.3
DDX55Q8NHQ9 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.213e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-206ENST00000525624 1048 ntTSL 516.26■□□□□ 0.193e-6■■■■■ 38.3
DDX55Q8NHQ9 CARM1-203ENST00000586221 2766 ntTSL 1 (best)16.26■□□□□ 0.191e-11■■■■■ 38.3
DDX55Q8NHQ9 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.193e-6■■■■■ 38.3
DDX55Q8NHQ9 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.22■□□□□ 0.193e-6■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-204ENST00000563168 1525 ntTSL 216.2■□□□□ 0.183e-6■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-203ENST00000562235 775 ntTSL 216.09■□□□□ 0.173e-6■■■■■ 38.3
DDX55Q8NHQ9 UNC45A-214ENST00000556704 1299 ntTSL 516.09■□□□□ 0.173e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC16.04■□□□□ 0.163e-6■■■■■ 38.3
DDX55Q8NHQ9 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.98■□□□□ 0.153e-6■■■■■ 38.3
DDX55Q8NHQ9 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.143e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-204ENST00000459738 229 ntTSL 215.81■□□□□ 0.123e-6■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-205ENST00000563271 614 ntTSL 215.81■□□□□ 0.123e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-218ENST00000495661 557 ntTSL 515.81■□□□□ 0.123e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-213ENST00000487085 708 ntTSL 315.7■□□□□ 0.13e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-211ENST00000484622 401 ntTSL 515.7■□□□□ 0.13e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-217ENST00000625216 629 ntTSL 515.48■□□□□ 0.073e-6■■■■■ 38.3
DDX55Q8NHQ9 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.063e-6■■■■■ 38.3
DDX55Q8NHQ9 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.063e-6■■■■■ 38.3
DDX55Q8NHQ9 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.063e-6■■■■■ 38.3
DDX55Q8NHQ9 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.053e-6■■■■■ 38.3
DDX55Q8NHQ9 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.23■□□□□ 0.033e-6■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC15.09■□□□□ 0.011e-15■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-206ENST00000549043 1232 ntTSL 1 (best) BASIC14.96□□□□□ -0.011e-15■■■■■ 38.3
DDX55Q8NHQ9 PRC1-206ENST00000555455 830 ntTSL 314.95□□□□□ -0.023e-6■■■■■ 38.3
DDX55Q8NHQ9 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.76□□□□□ -0.053e-6■■■■■ 38.3
DDX55Q8NHQ9 RCCD1-209ENST00000557750 1696 ntTSL 314.58□□□□□ -0.071e-9■■■■■ 38.3
DDX55Q8NHQ9 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.093e-6■■■■■ 38.3
DDX55Q8NHQ9 NIP7-201ENST00000254940 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.153e-6■■■■■ 38.3
Retrieved 100 of 15,504 protein–RNA pairs in 568 ms