RNA–Protein interactions for RNA: ENST00000261318.4

C12orf49-201, Transcript of chromosome 12 open reading frame 49, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C12orf49, Length 8,404 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C12orf49-201ENST00000261318 DCAF8L2P0C7V8 631 aa25.02■■□□□ 1.6
C12orf49-201ENST00000261318 SUPT5HO00267 1087 aaKnown RBP24.19■■□□□ 1.46
C12orf49-201ENST00000261318 PELP1Q8IZL8 1130 aaKnown RBP23.89■■□□□ 1.41
C12orf49-201ENST00000261318 NISCHQ9Y2I1 1504 aa23.88■■□□□ 1.41
C12orf49-201ENST00000261318 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
C12orf49-201ENST00000261318 EHMT2Q96KQ7 1210 aa23.46■■□□□ 1.35
C12orf49-201ENST00000261318 APLP2Q06481 763 aa23.16■■□□□ 1.3
C12orf49-201ENST00000261318 PCGF6Q9BYE7 350 aa23.11■■□□□ 1.29
C12orf49-201ENST00000261318 CENPBP07199 599 aaPredicted RBP22.99■■□□□ 1.27
C12orf49-201ENST00000261318 ZEB1P37275 1124 aaPredicted RBP22.88■■□□□ 1.25
C12orf49-201ENST00000261318 ERICH6Q7L0X2 663 aa22.87■■□□□ 1.25
C12orf49-201ENST00000261318 FAM9AQ8IZU1 332 aaPredicted RBP22.81■■□□□ 1.24
C12orf49-201ENST00000261318 CCER1Q8TC90 406 aaPredicted RBP22.78■■□□□ 1.24
C12orf49-201ENST00000261318 TTBK1Q5TCY1 1321 aaPredicted RBP22.78■■□□□ 1.24
C12orf49-201ENST00000261318 MYT1Q01538 1121 aa22.74■■□□□ 1.23
C12orf49-201ENST00000261318 TRIM41Q8WV44 630 aa22.41■■□□□ 1.18
C12orf49-201ENST00000261318 NEFLP07196 543 aa22.4■■□□□ 1.18
C12orf49-201ENST00000261318 YTHDC1Q96MU7 727 aaKnown RBP22.33■■□□□ 1.17
C12orf49-201ENST00000261318 RANGAP1P46060 587 aaPredicted RBP22.32■■□□□ 1.16
C12orf49-201ENST00000261318 UBTFP17480 764 aaKnown RBP22.16■■□□□ 1.14
C12orf49-201ENST00000261318 ATP1B4Q9UN42 357 aaPredicted RBP22.14■■□□□ 1.13
C12orf49-201ENST00000261318 TRIM26Q12899 539 aaPredicted RBP22.09■■□□□ 1.13
C12orf49-201ENST00000261318 HRCP23327 699 aa22.04■■□□□ 1.12
C12orf49-201ENST00000261318 PPARGC1BQ86YN6 1023 aaKnown RBP21.92■■□□□ 1.1
C12orf49-201ENST00000261318 DAXXQ9UER7 740 aaPredicted RBP21.79■■□□□ 1.08
C12orf49-201ENST00000261318 LOC105371045A0A1W2PR82 267 aa21.55■■□□□ 1.04
C12orf49-201ENST00000261318 ITGAEP38570 1179 aa21.52■■□□□ 1.04
C12orf49-201ENST00000261318 DIEXFQ68CQ4 756 aaKnown RBP21.48■■□□□ 1.03
C12orf49-201ENST00000261318 POLR3GLQ9BT43 218 aa21.47■■□□□ 1.03
C12orf49-201ENST00000261318 HNRNPUL2Q1KMD3 747 aaKnown RBP21.45■■□□□ 1.02
C12orf49-201ENST00000261318 CHIC1Q5VXU3 224 aa21.44■■□□□ 1.02
C12orf49-201ENST00000261318 RTL5Q5HYW3 569 aaPredicted RBP21.41■■□□□ 1.02
C12orf49-201ENST00000261318 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.34■■□□□ 1.01
C12orf49-201ENST00000261318 ZNF316A6NFI3 1004 aaPredicted RBP21.3■■□□□ 1
C12orf49-201ENST00000261318 CNGB1Q14028 1251 aaPredicted RBP21.26■□□□□ 0.99
C12orf49-201ENST00000261318 GTF3C3Q9Y5Q9 886 aa21.18■□□□□ 0.98
C12orf49-201ENST00000261318 CLSPNQ9HAW4 1339 aa21.16■□□□□ 0.98
C12orf49-201ENST00000261318 MYT1LQ9UL68 1186 aa21.14■□□□□ 0.97
C12orf49-201ENST00000261318 BCANQ96GW7 911 aa21.02■□□□□ 0.95
C12orf49-201ENST00000261318 CDK11AQ9UQ88 783 aaPredicted RBP21■□□□□ 0.95
C12orf49-201ENST00000261318 SLC4A1APQ9BWU0 796 aaKnown RBP20.99■□□□□ 0.95
C12orf49-201ENST00000261318 FAM50AQ14320 339 aaKnown RBP20.96■□□□□ 0.95
C12orf49-201ENST00000261318 ANP32CO43423 234 aa20.93■□□□□ 0.94
C12orf49-201ENST00000261318 NEUROD1Q13562 356 aa20.89■□□□□ 0.94
C12orf49-201ENST00000261318 ACIN1Q9UKV3 1341 aaKnown RBP20.85■□□□□ 0.93
C12orf49-201ENST00000261318 TRIM52Q96A61 297 aa20.82■□□□□ 0.92
C12orf49-201ENST00000261318 ANP32AP39687 249 aaKnown RBP20.68■□□□□ 0.9
C12orf49-201ENST00000261318 ZBTB47Q9UFB7 747 aaPredicted RBP20.64■□□□□ 0.9
C12orf49-201ENST00000261318 ZNF326Q5BKZ1 582 aaKnown RBP20.61■□□□□ 0.89
C12orf49-201ENST00000261318 CANXP27824 592 aaKnown RBP20.57■□□□□ 0.88
C12orf49-201ENST00000261318 NPM2Q86SE8 214 aaKnown RBP20.46■□□□□ 0.87
C12orf49-201ENST00000261318 FKBP8Q14318 412 aa20.45■□□□□ 0.86
C12orf49-201ENST00000261318 EIF5BO60841 1220 aaKnown RBP20.41■□□□□ 0.86
C12orf49-201ENST00000261318 DCAF1Q9Y4B6 1507 aa20.41■□□□□ 0.86
C12orf49-201ENST00000261318 BCL11AQ9H165 835 aa20.38■□□□□ 0.85
C12orf49-201ENST00000261318 ANP32BQ92688 251 aaKnown RBP20.35■□□□□ 0.85
C12orf49-201ENST00000261318 NEFMP07197 916 aa20.34■□□□□ 0.85
C12orf49-201ENST00000261318 SLC24A1O60721 1099 aa20.27■□□□□ 0.84
C12orf49-201ENST00000261318 HNRNPUQ00839 825 aaKnown RBP eCLIP20.27■□□□□ 0.84
C12orf49-201ENST00000261318 GLIPR1L2Q4G1C9 344 aa20.27■□□□□ 0.84
C12orf49-201ENST00000261318 CSRNP3Q8WYN3 585 aa20.26■□□□□ 0.83
C12orf49-201ENST00000261318 TONSLQ96HA7 1378 aa20.24■□□□□ 0.83
C12orf49-201ENST00000261318 HSP90AA1P07900 732 aaKnown RBP20.24■□□□□ 0.83
C12orf49-201ENST00000261318 PABPN1Q86U42 306 aaKnown RBP eCLIP20.24■□□□□ 0.83
C12orf49-201ENST00000261318 UPF2Q9HAU5 1272 aaKnown RBP20.24■□□□□ 0.83
C12orf49-201ENST00000261318 ABCC9O60706 1549 aa20.22■□□□□ 0.83
C12orf49-201ENST00000261318 SCAF1Q9H7N4 1312 aaKnown RBP20.2■□□□□ 0.82
C12orf49-201ENST00000261318 NBR1Q14596 966 aa20.19■□□□□ 0.82
C12orf49-201ENST00000261318 P3H3Q8IVL6 736 aa20.18■□□□□ 0.82
C12orf49-201ENST00000261318 DDX10Q13206 875 aaKnown RBP20.18■□□□□ 0.82
C12orf49-201ENST00000261318 FAM9BQ8IZU0 186 aa20.15■□□□□ 0.82
C12orf49-201ENST00000261318 CCDC136Q96JN2 1154 aa20.13■□□□□ 0.81
C12orf49-201ENST00000261318 FBLN2P98095 1184 aa20.09■□□□□ 0.81
C12orf49-201ENST00000261318 ARID3CA6NKF2 412 aa20.06■□□□□ 0.8
C12orf49-201ENST00000261318 ZNF777Q9ULD5 760 aaPredicted RBP20.05■□□□□ 0.8
C12orf49-201ENST00000261318 TMC1Q8TDI8 760 aa20.02■□□□□ 0.8
C12orf49-201ENST00000261318 GOLGA6L2Q8N9W4 650 aaPredicted RBP20■□□□□ 0.79
C12orf49-201ENST00000261318 MIER1Q8N108 512 aa20■□□□□ 0.79
C12orf49-201ENST00000261318 SALL2Q9Y467 1007 aaPredicted RBP20■□□□□ 0.79
C12orf49-201ENST00000261318 SCRIBQ14160 1630 aa19.99■□□□□ 0.79
C12orf49-201ENST00000261318 ARXQ96QS3 562 aa19.95■□□□□ 0.78
C12orf49-201ENST00000261318 CCDC180Q9P1Z9 1646 aa19.95■□□□□ 0.78
C12orf49-201ENST00000261318 MRS2Q9HD23 443 aa19.93■□□□□ 0.78
C12orf49-201ENST00000261318 IRX6P78412 446 aaPredicted RBP19.9■□□□□ 0.78
C12orf49-201ENST00000261318 WDR43Q15061 677 aaKnown RBP eCLIP19.87■□□□□ 0.77
C12orf49-201ENST00000261318 DDRGK1Q96HY6 314 aa19.84■□□□□ 0.77
C12orf49-201ENST00000261318 ANP32EQ9BTT0 268 aa19.81■□□□□ 0.76
C12orf49-201ENST00000261318 BECN1Q14457 450 aa19.79■□□□□ 0.76
C12orf49-201ENST00000261318 ZCCHC6Q5VYS8 1495 aaKnown RBP19.78■□□□□ 0.76
C12orf49-201ENST00000261318 CHGAP10645 457 aaKnown RBP19.77■□□□□ 0.76
C12orf49-201ENST00000261318 CHIC2Q9UKJ5 165 aa19.76■□□□□ 0.75
C12orf49-201ENST00000261318 TRIM44Q96DX7 344 aaPredicted RBP19.75■□□□□ 0.75
C12orf49-201ENST00000261318 HIRIP3Q9BW71 556 aaPredicted RBP19.74■□□□□ 0.75
C12orf49-201ENST00000261318 MYO15BQ96JP2 1530 aa19.73■□□□□ 0.75
C12orf49-201ENST00000261318 EIF4G2P78344 907 aaKnown RBP eCLIP19.73■□□□□ 0.75
C12orf49-201ENST00000261318 MYH16Q9H6N6 1097 aa19.71■□□□□ 0.75
C12orf49-201ENST00000261318 STAG3Q9UJ98 1225 aa19.71■□□□□ 0.75
C12orf49-201ENST00000261318 CLIP1P30622 1438 aa19.7■□□□□ 0.74
C12orf49-201ENST00000261318 KDM2AQ9Y2K7 1162 aa19.69■□□□□ 0.74
C12orf49-201ENST00000261318 MTUS2Q5JR59 1369 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms