RNA–Protein interactions for RNA: ENST00000573795.5

SNF8-216, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 5

Gene SNF8, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-216ENST00000573795 NISCHQ9Y2I1 1504 aa55.53■■■■■ 6.48
SNF8-216ENST00000573795 CCDC180Q9P1Z9 1646 aa49.88■■■■■ 5.58
SNF8-216ENST00000573795 ABCC9O60706 1549 aa49.85■■■■■ 5.57
SNF8-216ENST00000573795 RB1CC1Q8TDY2 1594 aa47.43■■■■■ 5.18
SNF8-216ENST00000573795 NACADO15069 1562 aa47.11■■■■■ 5.13
SNF8-216ENST00000573795 DNAJC5BQ9UF47 199 aa46.82■■■■■ 5.09
SNF8-216ENST00000573795 DCAF8L2P0C7V8 631 aa46.69■■■■■ 5.06
SNF8-216ENST00000573795 UNC13AQ9UPW8 1703 aa46.49■■■■■ 5.03
SNF8-216ENST00000573795 MYO15BQ96JP2 1530 aa46.49■■■■■ 5.03
SNF8-216ENST00000573795 PABPN1Q86U42 306 aaKnown RBP eCLIP46.36■■■■■ 5.015e-8■■■□□ 16.1
SNF8-216ENST00000573795 BICRAQ9NZM4 1560 aa46.16■■■■■ 4.98
SNF8-216ENST00000573795 ZCCHC6Q5VYS8 1495 aaKnown RBP46.05■■■■■ 4.96
SNF8-216ENST00000573795 DCAF1Q9Y4B6 1507 aa45.88■■■■■ 4.94
SNF8-216ENST00000573795 SHROOM4Q9ULL8 1493 aa45.45■■■■■ 4.87
SNF8-216ENST00000573795 SCRIBQ14160 1630 aa45.43■■■■■ 4.86
SNF8-216ENST00000573795 CC2D2AQ9P2K1 1620 aa45.07■■■■■ 4.81
SNF8-216ENST00000573795 EIF4G1Q04637 1599 aaKnown RBP44.97■■■■■ 4.79
SNF8-216ENST00000573795 CECR2Q9BXF3 1484 aa44.9■■■■■ 4.78
SNF8-216ENST00000573795 NCAPD3P42695 1498 aa43.5■■■■■ 4.55
SNF8-216ENST00000573795 ATAD2BQ9ULI0 1458 aa43.38■■■■■ 4.53
SNF8-216ENST00000573795 SMARCA4P51532 1647 aa43.35■■■■■ 4.53
SNF8-216ENST00000573795 SMARCA2P51531 1590 aa43.22■■■■■ 4.51
SNF8-216ENST00000573795 HMGXB3Q12766 1538 aa43.2■■■■■ 4.51
SNF8-216ENST00000573795 BAZ1AQ9NRL2 1556 aaPredicted RBP43.08■■■■■ 4.49
SNF8-216ENST00000573795 ERCC6Q03468 1493 aa42.98■■■■■ 4.47
SNF8-216ENST00000573795 CUX2O14529 1486 aa42.97■■■■■ 4.47
SNF8-216ENST00000573795 PEG3Q9GZU2 1588 aa42.95■■■■■ 4.47
SNF8-216ENST00000573795 DNAJC5Q9H3Z4 198 aa42.94■■■■■ 4.46
SNF8-216ENST00000573795 BAZ1BQ9UIG0 1483 aaKnown RBP42.92■■■■■ 4.46
SNF8-216ENST00000573795 NESP48681 1621 aa42.86■■■■■ 4.45
SNF8-216ENST00000573795 MROH2BQ7Z745 1585 aa42.82■■■■■ 4.44
SNF8-216ENST00000573795 LAMC3Q9Y6N6 1575 aa42.52■■■■■ 4.4
SNF8-216ENST00000573795 THOC2Q8NI27 1593 aaKnown RBP42.48■■■■■ 4.39
SNF8-216ENST00000573795 KIF21AQ7Z4S6 1674 aa42.34■■■■■ 4.37
SNF8-216ENST00000573795 WIZO95785 1651 aa42.31■■■■■ 4.36
SNF8-216ENST00000573795 PDS5BQ9NTI5 1447 aa42.21■■■■■ 4.35
SNF8-216ENST00000573795 CADPSQ9ULU8 1353 aa42.14■■■■■ 4.34
SNF8-216ENST00000573795 MRC2Q9UBG0 1479 aa41.91■■■■■ 4.3
SNF8-216ENST00000573795 RSF1Q96T23 1441 aaPredicted RBP41.88■■■■■ 4.3
SNF8-216ENST00000573795 WDR62O43379 1518 aa41.85■■■■■ 4.29
SNF8-216ENST00000573795 TOP2AP11388 1531 aaKnown RBP41.74■■■■■ 4.27
SNF8-216ENST00000573795 CEP164Q9UPV0 1460 aa41.72■■■■■ 4.27
SNF8-216ENST00000573795 CFTRP13569 1480 aa41.69■■■■■ 4.26
SNF8-216ENST00000573795 FANCD2Q9BXW9 1451 aa41.68■■■■■ 4.26
SNF8-216ENST00000573795 URB2Q14146 1524 aaKnown RBP41.39■■■■■ 4.22
SNF8-216ENST00000573795 PRDM2Q13029 1718 aa41.34■■■■■ 4.21
SNF8-216ENST00000573795 CCDC88BA6NC98 1476 aa41.26■■■■■ 4.2
SNF8-216ENST00000573795 TRIM41Q8WV44 630 aa40.99■■■■■ 4.15
SNF8-216ENST00000573795 TOPBP1Q92547 1522 aa40.92■■■■■ 4.14
SNF8-216ENST00000573795 OSCARQ8IYS5 282 aa40.9■■■■■ 4.14
SNF8-216ENST00000573795 IFT140Q96RY7 1462 aa40.89■■■■■ 4.14
SNF8-216ENST00000573795 ZNF608Q9ULD9 1512 aaPredicted RBP40.88■■■■■ 4.14
SNF8-216ENST00000573795 DNMBPQ6XZF7 1577 aa40.77■■■■■ 4.12
SNF8-216ENST00000573795 ABCC8Q09428 1581 aa40.75■■■■■ 4.11
SNF8-216ENST00000573795 EIF4G3O43432 1585 aaKnown RBP40.67■■■■■ 4.1
SNF8-216ENST00000573795 TARBP1Q13395 1621 aaKnown RBP40.6■■■■■ 4.09
SNF8-216ENST00000573795 RIMBP3CA6NJZ7 1639 aa40.53■■■■■ 4.08
SNF8-216ENST00000573795 RIMBP3BA6NNM3 1639 aa40.53■■■■■ 4.08
SNF8-216ENST00000573795 RIMBP3Q9UFD9 1639 aa40.53■■■■■ 4.08
SNF8-216ENST00000573795 POLA1P09884 1462 aaPredicted RBP40.51■■■■■ 4.07
SNF8-216ENST00000573795 AQRO60306 1485 aaKnown RBP eCLIP40.46■■■■■ 4.073e-6■■■□□ 17.8
SNF8-216ENST00000573795 CHD1O14646 1710 aa40.38■■■■■ 4.05
SNF8-216ENST00000573795 ARHGEF11O15085 1522 aa40.37■■■■■ 4.05
SNF8-216ENST00000573795 RAD54L2Q9Y4B4 1467 aa40.34■■■■■ 4.05
SNF8-216ENST00000573795 SOGA1O94964 1423 aa40.25■■■■■ 4.03
SNF8-216ENST00000573795 CUX1P39880 1505 aa40.23■■■■■ 4.03
SNF8-216ENST00000573795 FGD5Q6ZNL6 1462 aa40.23■■■■■ 4.03
SNF8-216ENST00000573795 TDRD9Q8NDG6 1382 aaKnown RBP40.19■■■■■ 4.02
SNF8-216ENST00000573795 WDR97A6NE52 1622 aa40.14■■■■■ 4.02
SNF8-216ENST00000573795 FBLN2P98095 1184 aa40.08■■■■■ 4.01
SNF8-216ENST00000573795 SNAPC4Q5SXM2 1469 aa40.07■■■■■ 4
SNF8-216ENST00000573795 ARAP1Q96P48 1450 aa40■■■■□ 3.99
SNF8-216ENST00000573795 CYB5RLQ6IPT4 315 aa39.97■■■■□ 3.99
SNF8-216ENST00000573795 MAGI1Q96QZ7 1491 aaPredicted RBP39.94■■■■□ 3.98
SNF8-216ENST00000573795 GRIN2BQ13224 1484 aa39.93■■■■□ 3.98
SNF8-216ENST00000573795 CLASP1Q7Z460 1538 aa39.92■■■■□ 3.98
SNF8-216ENST00000573795 SUPT5HO00267 1087 aaKnown RBP39.88■■■■□ 3.97
SNF8-216ENST00000573795 PBRM1Q86U86 1689 aa39.85■■■■□ 3.97
SNF8-216ENST00000573795 SYNJ1O43426 1573 aa39.82■■■■□ 3.97
SNF8-216ENST00000573795 SYNJ2O15056 1496 aa39.81■■■■□ 3.96
SNF8-216ENST00000573795 CHMP7Q8WUX9 453 aaPredicted RBP39.8■■■■□ 3.96
SNF8-216ENST00000573795 GAPVD1Q14C86 1478 aa39.78■■■■□ 3.96
SNF8-216ENST00000573795 ABCA10Q8WWZ4 1543 aa39.78■■■■□ 3.96
SNF8-216ENST00000573795 ABCA5Q8WWZ7 1642 aa39.77■■■■□ 3.96
SNF8-216ENST00000573795 BIVM-ERCC5R4GMW8 1640 aa39.59■■■■□ 3.93
SNF8-216ENST00000573795 TOP2BQ02880 1626 aa39.56■■■■□ 3.92
SNF8-216ENST00000573795 WRNQ14191 1432 aaPredicted RBP eCLIP39.54■■■■□ 3.92
SNF8-216ENST00000573795 TRHP20396 242 aaPredicted RBP39.48■■■■□ 3.91
SNF8-216ENST00000573795 ADAMTS12P58397 1594 aa39.46■■■■□ 3.91
SNF8-216ENST00000573795 GRIN2AQ12879 1464 aa39.44■■■■□ 3.9
SNF8-216ENST00000573795 CEP170Q5SW79 1584 aa39.35■■■■□ 3.89
SNF8-216ENST00000573795 NUP160Q12769 1436 aa39.33■■■■□ 3.89
SNF8-216ENST00000573795 ERCC6L2Q5T890 1561 aa39.32■■■■□ 3.88
SNF8-216ENST00000573795 FHAD1B1AJZ9 1412 aa39.27■■■■□ 3.88
SNF8-216ENST00000573795 ERICH3Q5RHP9 1530 aa39.27■■■■□ 3.88
SNF8-216ENST00000573795 SHROOM2Q13796 1616 aa39.2■■■■□ 3.87
SNF8-216ENST00000573795 RUSC2Q8N2Y8 1516 aa38.92■■■■□ 3.82
SNF8-216ENST00000573795 PRG4Q92954 1404 aaPredicted RBP38.89■■■■□ 3.82
SNF8-216ENST00000573795 JPH4Q96JJ6 628 aa38.82■■■■□ 3.8
SNF8-216ENST00000573795 IGF1RP08069 1367 aa38.73■■■■□ 3.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms