RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-204ENST00000594661 NISCHQ9Y2I1 1504 aa33.6■■■□□ 2.97
PNKP-204ENST00000594661 CCDC180Q9P1Z9 1646 aa29.12■■■□□ 2.25
PNKP-204ENST00000594661 ZCCHC6Q5VYS8 1495 aaKnown RBP28.29■■■□□ 2.12
PNKP-204ENST00000594661 DCAF8L2P0C7V8 631 aa27.75■■■□□ 2.03
PNKP-204ENST00000594661 SHROOM4Q9ULL8 1493 aa27.73■■■□□ 2.03
PNKP-204ENST00000594661 DCAF1Q9Y4B6 1507 aa27.71■■■□□ 2.03
PNKP-204ENST00000594661 ABCC9O60706 1549 aa27.43■■□□□ 1.98
PNKP-204ENST00000594661 MYO15BQ96JP2 1530 aa27.25■■□□□ 1.95
PNKP-204ENST00000594661 NACADO15069 1562 aa27.05■■□□□ 1.92
PNKP-204ENST00000594661 SCRIBQ14160 1630 aa26.94■■□□□ 1.9
PNKP-204ENST00000594661 RB1CC1Q8TDY2 1594 aa26.78■■□□□ 1.88
PNKP-204ENST00000594661 SUPT5HO00267 1087 aaKnown RBP26.77■■□□□ 1.88
PNKP-204ENST00000594661 UNC13AQ9UPW8 1703 aa26.34■■□□□ 1.81
PNKP-204ENST00000594661 RSF1Q96T23 1441 aaPredicted RBP26.19■■□□□ 1.78
PNKP-204ENST00000594661 CECR2Q9BXF3 1484 aa26.16■■□□□ 1.78
PNKP-204ENST00000594661 BICRAQ9NZM4 1560 aa26.05■■□□□ 1.76
PNKP-204ENST00000594661 MROH2BQ7Z745 1585 aa26.02■■□□□ 1.76
PNKP-204ENST00000594661 PABPN1Q86U42 306 aaKnown RBP eCLIP25.95■■□□□ 1.745e-6■■■■□ 22.2
PNKP-204ENST00000594661 BAZ1AQ9NRL2 1556 aaPredicted RBP25.9■■□□□ 1.74
PNKP-204ENST00000594661 WIZO95785 1651 aa25.83■■□□□ 1.73
PNKP-204ENST00000594661 SMARCA4P51532 1647 aa25.78■■□□□ 1.72
PNKP-204ENST00000594661 CHIC1Q5VXU3 224 aa25.72■■□□□ 1.71
PNKP-204ENST00000594661 PELP1Q8IZL8 1130 aaKnown RBP25.57■■□□□ 1.68
PNKP-204ENST00000594661 TOP2AP11388 1531 aaKnown RBP25.51■■□□□ 1.67
PNKP-204ENST00000594661 PEG3Q9GZU2 1588 aa25.41■■□□□ 1.66
PNKP-204ENST00000594661 HRCP23327 699 aa25.41■■□□□ 1.66
PNKP-204ENST00000594661 SMARCA2P51531 1590 aa25.31■■□□□ 1.64
PNKP-204ENST00000594661 ATAD2BQ9ULI0 1458 aa25.29■■□□□ 1.64
PNKP-204ENST00000594661 CCDC88BA6NC98 1476 aa25.28■■□□□ 1.64
PNKP-204ENST00000594661 EIF4G1Q04637 1599 aaKnown RBP25.22■■□□□ 1.63
PNKP-204ENST00000594661 BAZ1BQ9UIG0 1483 aaKnown RBP25.16■■□□□ 1.62
PNKP-204ENST00000594661 TRIM41Q8WV44 630 aa25.09■■□□□ 1.61
PNKP-204ENST00000594661 NCAPD3P42695 1498 aa24.99■■□□□ 1.59
PNKP-204ENST00000594661 HMGXB3Q12766 1538 aa24.98■■□□□ 1.59
PNKP-204ENST00000594661 ABCC8Q09428 1581 aa24.9■■□□□ 1.58
PNKP-204ENST00000594661 MYT1Q01538 1121 aa24.82■■□□□ 1.56
PNKP-204ENST00000594661 LOC105371045A0A1W2PR82 267 aa24.81■■□□□ 1.56
PNKP-204ENST00000594661 CC2D2AQ9P2K1 1620 aa24.8■■□□□ 1.56
PNKP-204ENST00000594661 FAM9AQ8IZU1 332 aaPredicted RBP24.73■■□□□ 1.55
PNKP-204ENST00000594661 WRNQ14191 1432 aaPredicted RBP eCLIP24.63■■□□□ 1.53
PNKP-204ENST00000594661 PPARGC1BQ86YN6 1023 aaKnown RBP24.59■■□□□ 1.53
PNKP-204ENST00000594661 SYNJ1O43426 1573 aa24.57■■□□□ 1.52
PNKP-204ENST00000594661 CFTRP13569 1480 aa24.53■■□□□ 1.52
PNKP-204ENST00000594661 SOGA1O94964 1423 aa24.47■■□□□ 1.51
PNKP-204ENST00000594661 EHMT2Q96KQ7 1210 aa24.43■■□□□ 1.5
PNKP-204ENST00000594661 PRDM2Q13029 1718 aa24.4■■□□□ 1.5
PNKP-204ENST00000594661 CADPSQ9ULU8 1353 aa24.39■■□□□ 1.5
PNKP-204ENST00000594661 TOP2BQ02880 1626 aa24.39■■□□□ 1.5
PNKP-204ENST00000594661 RUSC2Q8N2Y8 1516 aa24.38■■□□□ 1.49
PNKP-204ENST00000594661 PCGF6Q9BYE7 350 aa24.36■■□□□ 1.49
PNKP-204ENST00000594661 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
PNKP-204ENST00000594661 EEA1Q15075 1411 aa24.34■■□□□ 1.49
PNKP-204ENST00000594661 CUX1P39880 1505 aa24.3■■□□□ 1.48
PNKP-204ENST00000594661 SCAF1Q9H7N4 1312 aaKnown RBP24.28■■□□□ 1.48
PNKP-204ENST00000594661 CSRNP3Q8WYN3 585 aa24.25■■□□□ 1.47
PNKP-204ENST00000594661 DNAJC5BQ9UF47 199 aa24.22■■□□□ 1.47
PNKP-204ENST00000594661 NESP48681 1621 aa24.19■■□□□ 1.46
PNKP-204ENST00000594661 FANCD2Q9BXW9 1451 aa24.15■■□□□ 1.46
PNKP-204ENST00000594661 LAMC3Q9Y6N6 1575 aa24.1■■□□□ 1.45
PNKP-204ENST00000594661 GOLGA3Q08378 1498 aa24.08■■□□□ 1.44
PNKP-204ENST00000594661 KIF21BO75037 1637 aa24.06■■□□□ 1.44
PNKP-204ENST00000594661 CEP164Q9UPV0 1460 aa24.04■■□□□ 1.44
PNKP-204ENST00000594661 TNIKQ9UKE5 1360 aa24.04■■□□□ 1.44
PNKP-204ENST00000594661 UBTFP17480 764 aaKnown RBP23.99■■□□□ 1.43
PNKP-204ENST00000594661 FGD5Q6ZNL6 1462 aa23.99■■□□□ 1.43
PNKP-204ENST00000594661 CEP162Q5TB80 1403 aa23.98■■□□□ 1.43
PNKP-204ENST00000594661 DNMBPQ6XZF7 1577 aa23.96■■□□□ 1.43
PNKP-204ENST00000594661 KIF27Q86VH2 1401 aa23.95■■□□□ 1.43
PNKP-204ENST00000594661 RAPGEF2Q9Y4G8 1499 aa23.95■■□□□ 1.42
PNKP-204ENST00000594661 TRIM26Q12899 539 aaPredicted RBP23.94■■□□□ 1.42
PNKP-204ENST00000594661 TOPBP1Q92547 1522 aa23.92■■□□□ 1.42
PNKP-204ENST00000594661 PDS5BQ9NTI5 1447 aa23.9■■□□□ 1.42
PNKP-204ENST00000594661 CUX2O14529 1486 aa23.88■■□□□ 1.41
PNKP-204ENST00000594661 PRXQ9BXM0 1461 aa23.88■■□□□ 1.41
PNKP-204ENST00000594661 KIF21AQ7Z4S6 1674 aa23.87■■□□□ 1.41
PNKP-204ENST00000594661 URB2Q14146 1524 aaKnown RBP23.86■■□□□ 1.41
PNKP-204ENST00000594661 ERICH3Q5RHP9 1530 aa23.84■■□□□ 1.41
PNKP-204ENST00000594661 POLA1P09884 1462 aaPredicted RBP23.84■■□□□ 1.41
PNKP-204ENST00000594661 RAD54L2Q9Y4B4 1467 aa23.8■■□□□ 1.4
PNKP-204ENST00000594661 IGF1RP08069 1367 aa23.75■■□□□ 1.39
PNKP-204ENST00000594661 ABCA10Q8WWZ4 1543 aa23.74■■□□□ 1.39
PNKP-204ENST00000594661 ZEB1P37275 1124 aaPredicted RBP23.74■■□□□ 1.39
PNKP-204ENST00000594661 CLIP1P30622 1438 aa23.72■■□□□ 1.39
PNKP-204ENST00000594661 WDR97A6NE52 1622 aa23.67■■□□□ 1.38
PNKP-204ENST00000594661 CARMIL1Q5VZK9 1371 aa23.62■■□□□ 1.37
PNKP-204ENST00000594661 RANGAP1P46060 587 aaPredicted RBP23.62■■□□□ 1.37
PNKP-204ENST00000594661 MRC2Q9UBG0 1479 aa23.61■■□□□ 1.37
PNKP-204ENST00000594661 ACIN1Q9UKV3 1341 aaKnown RBP23.56■■□□□ 1.36
PNKP-204ENST00000594661 ABCA5Q8WWZ7 1642 aa23.55■■□□□ 1.36
PNKP-204ENST00000594661 TTBK1Q5TCY1 1321 aaPredicted RBP23.55■■□□□ 1.36
PNKP-204ENST00000594661 TARBP1Q13395 1621 aaKnown RBP23.54■■□□□ 1.36
PNKP-204ENST00000594661 VPS8Q8N3P4 1428 aa23.54■■□□□ 1.36
PNKP-204ENST00000594661 TDRD9Q8NDG6 1382 aaKnown RBP23.53■■□□□ 1.36
PNKP-204ENST00000594661 CUL7Q14999 1698 aa23.5■■□□□ 1.35
PNKP-204ENST00000594661 ARAP1Q96P48 1450 aa23.49■■□□□ 1.35
PNKP-204ENST00000594661 GAPVD1Q14C86 1478 aa23.48■■□□□ 1.35
PNKP-204ENST00000594661 WDR62O43379 1518 aa23.48■■□□□ 1.35
PNKP-204ENST00000594661 ERCC6Q03468 1493 aa23.45■■□□□ 1.34
PNKP-204ENST00000594661 ARHGAP35Q9NRY4 1499 aa23.43■■□□□ 1.34
PNKP-204ENST00000594661 THOC2Q8NI27 1593 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms