RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 NISCHQ9Y2I1 1504 aa30.89■■■□□ 2.54
PNKP-217ENST00000625216 CCDC180Q9P1Z9 1646 aa27.51■■□□□ 1.99
PNKP-217ENST00000625216 ABCC9O60706 1549 aa27.25■■□□□ 1.95
PNKP-217ENST00000625216 RB1CC1Q8TDY2 1594 aa26.1■■□□□ 1.77
PNKP-217ENST00000625216 NACADO15069 1562 aa26.02■■□□□ 1.76
PNKP-217ENST00000625216 DCAF8L2P0C7V8 631 aa25.99■■□□□ 1.75
PNKP-217ENST00000625216 MYO15BQ96JP2 1530 aa25.81■■□□□ 1.72
PNKP-217ENST00000625216 ZCCHC6Q5VYS8 1495 aaKnown RBP25.65■■□□□ 1.7
PNKP-217ENST00000625216 DCAF1Q9Y4B6 1507 aa25.58■■□□□ 1.68
PNKP-217ENST00000625216 PABPN1Q86U42 306 aaKnown RBP eCLIP25.47■■□□□ 1.67
PNKP-217ENST00000625216 DNAJC5BQ9UF47 199 aa25.33■■□□□ 1.65
PNKP-217ENST00000625216 UNC13AQ9UPW8 1703 aa25.32■■□□□ 1.64
PNKP-217ENST00000625216 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
PNKP-217ENST00000625216 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
PNKP-217ENST00000625216 SCRIBQ14160 1630 aa25.05■■□□□ 1.6
PNKP-217ENST00000625216 EIF4G1Q04637 1599 aaKnown RBP24.65■■□□□ 1.54
PNKP-217ENST00000625216 CC2D2AQ9P2K1 1620 aa24.6■■□□□ 1.53
PNKP-217ENST00000625216 CECR2Q9BXF3 1484 aa24.55■■□□□ 1.52
PNKP-217ENST00000625216 NCAPD3P42695 1498 aa24.06■■□□□ 1.44
PNKP-217ENST00000625216 ATAD2BQ9ULI0 1458 aa23.99■■□□□ 1.43
PNKP-217ENST00000625216 SMARCA4P51532 1647 aa23.97■■□□□ 1.43
PNKP-217ENST00000625216 BAZ1AQ9NRL2 1556 aaPredicted RBP23.95■■□□□ 1.43
PNKP-217ENST00000625216 SMARCA2P51531 1590 aa23.94■■□□□ 1.42
PNKP-217ENST00000625216 HMGXB3Q12766 1538 aa23.84■■□□□ 1.41
PNKP-217ENST00000625216 PEG3Q9GZU2 1588 aa23.78■■□□□ 1.4
PNKP-217ENST00000625216 MROH2BQ7Z745 1585 aa23.77■■□□□ 1.4
PNKP-217ENST00000625216 BAZ1BQ9UIG0 1483 aaKnown RBP23.75■■□□□ 1.39
PNKP-217ENST00000625216 ERCC6Q03468 1493 aa23.55■■□□□ 1.36
PNKP-217ENST00000625216 NESP48681 1621 aa23.47■■□□□ 1.35
PNKP-217ENST00000625216 RSF1Q96T23 1441 aaPredicted RBP23.45■■□□□ 1.34
PNKP-217ENST00000625216 WIZO95785 1651 aa23.43■■□□□ 1.34
PNKP-217ENST00000625216 CUX2O14529 1486 aa23.42■■□□□ 1.34
PNKP-217ENST00000625216 LAMC3Q9Y6N6 1575 aa23.4■■□□□ 1.34
PNKP-217ENST00000625216 CADPSQ9ULU8 1353 aa23.35■■□□□ 1.33
PNKP-217ENST00000625216 PDS5BQ9NTI5 1447 aa23.33■■□□□ 1.33
PNKP-217ENST00000625216 TOP2AP11388 1531 aaKnown RBP23.23■■□□□ 1.31
PNKP-217ENST00000625216 THOC2Q8NI27 1593 aaKnown RBP23.14■■□□□ 1.29
PNKP-217ENST00000625216 CFTRP13569 1480 aa23.12■■□□□ 1.29
PNKP-217ENST00000625216 DNAJC5Q9H3Z4 198 aa23.11■■□□□ 1.29
PNKP-217ENST00000625216 KIF21AQ7Z4S6 1674 aa23.09■■□□□ 1.29
PNKP-217ENST00000625216 MRC2Q9UBG0 1479 aa23.05■■□□□ 1.28
PNKP-217ENST00000625216 FANCD2Q9BXW9 1451 aa23.03■■□□□ 1.28
PNKP-217ENST00000625216 CEP164Q9UPV0 1460 aa23.02■■□□□ 1.28
PNKP-217ENST00000625216 CCDC88BA6NC98 1476 aa22.99■■□□□ 1.27
PNKP-217ENST00000625216 WDR62O43379 1518 aa22.95■■□□□ 1.26
PNKP-217ENST00000625216 URB2Q14146 1524 aaKnown RBP22.78■■□□□ 1.24
PNKP-217ENST00000625216 PRDM2Q13029 1718 aa22.72■■□□□ 1.23
PNKP-217ENST00000625216 ABCC8Q09428 1581 aa22.67■■□□□ 1.22
PNKP-217ENST00000625216 SUPT5HO00267 1087 aaKnown RBP22.65■■□□□ 1.22
PNKP-217ENST00000625216 TOPBP1Q92547 1522 aa22.61■■□□□ 1.21
PNKP-217ENST00000625216 IFT140Q96RY7 1462 aa22.59■■□□□ 1.21
PNKP-217ENST00000625216 DNMBPQ6XZF7 1577 aa22.54■■□□□ 1.2
PNKP-217ENST00000625216 OSCARQ8IYS5 282 aa22.48■■□□□ 1.19
PNKP-217ENST00000625216 ZNF608Q9ULD9 1512 aaPredicted RBP22.45■■□□□ 1.18
PNKP-217ENST00000625216 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
PNKP-217ENST00000625216 SOGA1O94964 1423 aa22.36■■□□□ 1.17
PNKP-217ENST00000625216 TARBP1Q13395 1621 aaKnown RBP22.35■■□□□ 1.17
PNKP-217ENST00000625216 AQRO60306 1485 aaKnown RBP eCLIP22.32■■□□□ 1.165e-6■■■□□ 16.9
PNKP-217ENST00000625216 CUX1P39880 1505 aa22.31■■□□□ 1.16
PNKP-217ENST00000625216 RAD54L2Q9Y4B4 1467 aa22.3■■□□□ 1.16
PNKP-217ENST00000625216 FGD5Q6ZNL6 1462 aa22.29■■□□□ 1.16
PNKP-217ENST00000625216 EIF4G3O43432 1585 aaKnown RBP22.29■■□□□ 1.16
PNKP-217ENST00000625216 TDRD9Q8NDG6 1382 aaKnown RBP22.25■■□□□ 1.15
PNKP-217ENST00000625216 WDR97A6NE52 1622 aa22.2■■□□□ 1.15
PNKP-217ENST00000625216 FBLN2P98095 1184 aa22.16■■□□□ 1.14
PNKP-217ENST00000625216 TRIM41Q8WV44 630 aa22.16■■□□□ 1.14
PNKP-217ENST00000625216 GRIN2BQ13224 1484 aa22.12■■□□□ 1.13
PNKP-217ENST00000625216 WRNQ14191 1432 aaPredicted RBP eCLIP22.12■■□□□ 1.13
PNKP-217ENST00000625216 ABCA10Q8WWZ4 1543 aa22.1■■□□□ 1.13
PNKP-217ENST00000625216 CHMP7Q8WUX9 453 aaPredicted RBP22.09■■□□□ 1.13
PNKP-217ENST00000625216 SNAPC4Q5SXM2 1469 aa22.08■■□□□ 1.12
PNKP-217ENST00000625216 MAGI1Q96QZ7 1491 aaPredicted RBP22.08■■□□□ 1.12
PNKP-217ENST00000625216 GAPVD1Q14C86 1478 aa22.07■■□□□ 1.12
PNKP-217ENST00000625216 TOP2BQ02880 1626 aa22.04■■□□□ 1.12
PNKP-217ENST00000625216 CHD1O14646 1710 aa22■■□□□ 1.11
PNKP-217ENST00000625216 BIVM-ERCC5R4GMW8 1640 aa22■■□□□ 1.11
PNKP-217ENST00000625216 SYNJ2O15056 1496 aa22■■□□□ 1.11
PNKP-217ENST00000625216 ARHGEF11O15085 1522 aa21.99■■□□□ 1.11
PNKP-217ENST00000625216 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
PNKP-217ENST00000625216 RIMBP3CA6NJZ7 1639 aa21.97■■□□□ 1.11
PNKP-217ENST00000625216 RIMBP3BA6NNM3 1639 aa21.97■■□□□ 1.11
PNKP-217ENST00000625216 RIMBP3Q9UFD9 1639 aa21.97■■□□□ 1.11
PNKP-217ENST00000625216 ABCA5Q8WWZ7 1642 aa21.95■■□□□ 1.1
PNKP-217ENST00000625216 CYB5RLQ6IPT4 315 aa21.89■■□□□ 1.09
PNKP-217ENST00000625216 PBRM1Q86U86 1689 aa21.88■■□□□ 1.09
PNKP-217ENST00000625216 CLASP1Q7Z460 1538 aa21.86■■□□□ 1.09
PNKP-217ENST00000625216 FHAD1B1AJZ9 1412 aa21.83■■□□□ 1.09
PNKP-217ENST00000625216 ERICH3Q5RHP9 1530 aa21.82■■□□□ 1.08
PNKP-217ENST00000625216 GRIN2AQ12879 1464 aa21.8■■□□□ 1.08
PNKP-217ENST00000625216 ARAP1Q96P48 1450 aa21.78■■□□□ 1.08
PNKP-217ENST00000625216 ADAMTS12P58397 1594 aa21.76■■□□□ 1.07
PNKP-217ENST00000625216 NUP160Q12769 1436 aa21.74■■□□□ 1.07
PNKP-217ENST00000625216 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
PNKP-217ENST00000625216 IGF1RP08069 1367 aa21.67■■□□□ 1.06
PNKP-217ENST00000625216 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
PNKP-217ENST00000625216 JPH4Q96JJ6 628 aa21.59■■□□□ 1.05
PNKP-217ENST00000625216 TRHP20396 242 aaPredicted RBP21.54■■□□□ 1.04
PNKP-217ENST00000625216 SHROOM2Q13796 1616 aa21.53■■□□□ 1.04
PNKP-217ENST00000625216 CARMIL1Q5VZK9 1371 aa21.52■■□□□ 1.04
PNKP-217ENST00000625216 PRG4Q92954 1404 aaPredicted RBP21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms