RNA–Protein interactions for RNA: ENST00000322344.7

PNKP-201, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-201ENST00000322344 NISCHQ9Y2I1 1504 aa47.45■■■■■ 5.19
PNKP-201ENST00000322344 CCDC180Q9P1Z9 1646 aa40.71■■■■■ 4.11
PNKP-201ENST00000322344 ZCCHC6Q5VYS8 1495 aaKnown RBP40.11■■■■■ 4.01
PNKP-201ENST00000322344 SHROOM4Q9ULL8 1493 aa39.72■■■■□ 3.95
PNKP-201ENST00000322344 DCAF1Q9Y4B6 1507 aa39.19■■■■□ 3.86
PNKP-201ENST00000322344 DCAF8L2P0C7V8 631 aa38.93■■■■□ 3.82
PNKP-201ENST00000322344 SUPT5HO00267 1087 aaKnown RBP38.85■■■■□ 3.81
PNKP-201ENST00000322344 MYO15BQ96JP2 1530 aa38.24■■■■□ 3.71
PNKP-201ENST00000322344 CHIC1Q5VXU3 224 aa37.81■■■■□ 3.64
PNKP-201ENST00000322344 ABCC9O60706 1549 aa37.79■■■■□ 3.64
PNKP-201ENST00000322344 SCRIBQ14160 1630 aa37.73■■■■□ 3.63
PNKP-201ENST00000322344 NACADO15069 1562 aa37.67■■■■□ 3.62
PNKP-201ENST00000322344 RSF1Q96T23 1441 aaPredicted RBP37.33■■■■□ 3.57
PNKP-201ENST00000322344 RB1CC1Q8TDY2 1594 aa37.06■■■■□ 3.52
PNKP-201ENST00000322344 CECR2Q9BXF3 1484 aa36.82■■■■□ 3.48
PNKP-201ENST00000322344 MROH2BQ7Z745 1585 aa36.74■■■■□ 3.47
PNKP-201ENST00000322344 BAZ1AQ9NRL2 1556 aaPredicted RBP36.54■■■■□ 3.44
PNKP-201ENST00000322344 WIZO95785 1651 aa36.5■■■■□ 3.43
PNKP-201ENST00000322344 LOC105371045A0A1W2PR82 267 aa36.44■■■■□ 3.42
PNKP-201ENST00000322344 TRIM41Q8WV44 630 aa36.41■■■■□ 3.42
PNKP-201ENST00000322344 UNC13AQ9UPW8 1703 aa36.33■■■■□ 3.41
PNKP-201ENST00000322344 SMARCA4P51532 1647 aa36.21■■■■□ 3.39
PNKP-201ENST00000322344 PCGF6Q9BYE7 350 aa36.13■■■■□ 3.37
PNKP-201ENST00000322344 TOP2AP11388 1531 aaKnown RBP36.13■■■■□ 3.37
PNKP-201ENST00000322344 HRCP23327 699 aa36.1■■■■□ 3.37
PNKP-201ENST00000322344 EIF4G1Q04637 1599 aaKnown RBP36.04■■■■□ 3.36
PNKP-201ENST00000322344 BICRAQ9NZM4 1560 aa35.93■■■■□ 3.34
PNKP-201ENST00000322344 SMARCA2P51531 1590 aa35.84■■■■□ 3.33
PNKP-201ENST00000322344 CCDC88BA6NC98 1476 aa35.82■■■■□ 3.33
PNKP-201ENST00000322344 FAM9AQ8IZU1 332 aaPredicted RBP35.82■■■■□ 3.32
PNKP-201ENST00000322344 TRIM26Q12899 539 aaPredicted RBP35.78■■■■□ 3.32
PNKP-201ENST00000322344 PABPN1Q86U42 306 aaKnown RBP eCLIP35.69■■■■□ 3.35e-6■■■■□ 22.2
PNKP-201ENST00000322344 PEG3Q9GZU2 1588 aa35.68■■■■□ 3.3
PNKP-201ENST00000322344 ABCC8Q09428 1581 aa35.48■■■■□ 3.27
PNKP-201ENST00000322344 ATAD2BQ9ULI0 1458 aa35.33■■■■□ 3.25
PNKP-201ENST00000322344 EHMT2Q96KQ7 1210 aa35.3■■■■□ 3.24
PNKP-201ENST00000322344 EEA1Q15075 1411 aa35.25■■■■□ 3.23
PNKP-201ENST00000322344 BAZ1BQ9UIG0 1483 aaKnown RBP35.21■■■■□ 3.23
PNKP-201ENST00000322344 WRNQ14191 1432 aaPredicted RBP eCLIP35.11■■■■□ 3.21
PNKP-201ENST00000322344 SOGA1O94964 1423 aa35.1■■■■□ 3.21
PNKP-201ENST00000322344 PPARGC1BQ86YN6 1023 aaKnown RBP35.06■■■■□ 3.2
PNKP-201ENST00000322344 ZEB1P37275 1124 aaPredicted RBP35.03■■■■□ 3.2
PNKP-201ENST00000322344 CSRNP3Q8WYN3 585 aa34.98■■■■□ 3.19
PNKP-201ENST00000322344 TNIKQ9UKE5 1360 aa34.98■■■■□ 3.19
PNKP-201ENST00000322344 CEP162Q5TB80 1403 aa34.89■■■■□ 3.18
PNKP-201ENST00000322344 SYNJ1O43426 1573 aa34.89■■■■□ 3.18
PNKP-201ENST00000322344 RUSC2Q8N2Y8 1516 aa34.89■■■■□ 3.18
PNKP-201ENST00000322344 GOLGA3Q08378 1498 aa34.84■■■■□ 3.17
PNKP-201ENST00000322344 HMGXB3Q12766 1538 aa34.82■■■■□ 3.16
PNKP-201ENST00000322344 NCAPD3P42695 1498 aa34.79■■■■□ 3.16
PNKP-201ENST00000322344 CEP164Q9UPV0 1460 aa34.71■■■■□ 3.15
PNKP-201ENST00000322344 KIF21BO75037 1637 aa34.7■■■■□ 3.15
PNKP-201ENST00000322344 UBTFP17480 764 aaKnown RBP34.67■■■■□ 3.14
PNKP-201ENST00000322344 TOP2BQ02880 1626 aa34.63■■■■□ 3.13
PNKP-201ENST00000322344 BIVM-ERCC5R4GMW8 1640 aa34.56■■■■□ 3.12
PNKP-201ENST00000322344 CFTRP13569 1480 aa34.38■■■■□ 3.09
PNKP-201ENST00000322344 CLIP1P30622 1438 aa34.34■■■■□ 3.09
PNKP-201ENST00000322344 RAPGEF2Q9Y4G8 1499 aa34.32■■■■□ 3.08
PNKP-201ENST00000322344 CUX1P39880 1505 aa34.26■■■■□ 3.08
PNKP-201ENST00000322344 ERICH3Q5RHP9 1530 aa34.24■■■■□ 3.07
PNKP-201ENST00000322344 VPS8Q8N3P4 1428 aa34.21■■■■□ 3.07
PNKP-201ENST00000322344 PRDM2Q13029 1718 aa34.19■■■■□ 3.06
PNKP-201ENST00000322344 CCER1Q8TC90 406 aaPredicted RBP34.18■■■■□ 3.06
PNKP-201ENST00000322344 PRXQ9BXM0 1461 aa34.18■■■■□ 3.06
PNKP-201ENST00000322344 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.16■■■■□ 3.06
PNKP-201ENST00000322344 TTBK1Q5TCY1 1321 aaPredicted RBP34.14■■■■□ 3.06
PNKP-201ENST00000322344 KIF27Q86VH2 1401 aa34.11■■■■□ 3.05
PNKP-201ENST00000322344 CADPSQ9ULU8 1353 aa34.02■■■■□ 3.04
PNKP-201ENST00000322344 APLP2Q06481 763 aa33.96■■■■□ 3.03
PNKP-201ENST00000322344 CC2D2AQ9P2K1 1620 aa33.94■■■■□ 3.02
PNKP-201ENST00000322344 ARAP1Q96P48 1450 aa33.83■■■■□ 3.01
PNKP-201ENST00000322344 RANGAP1P46060 587 aaPredicted RBP33.77■■■■□ 3
PNKP-201ENST00000322344 CUX2O14529 1486 aa33.74■■■□□ 2.99
PNKP-201ENST00000322344 FGD5Q6ZNL6 1462 aa33.71■■■□□ 2.99
PNKP-201ENST00000322344 IGF1RP08069 1367 aa33.68■■■□□ 2.98
PNKP-201ENST00000322344 FANCD2Q9BXW9 1451 aa33.65■■■□□ 2.98
PNKP-201ENST00000322344 HNRNPUL2Q1KMD3 747 aaKnown RBP33.61■■■□□ 2.97
PNKP-201ENST00000322344 ARHGAP35Q9NRY4 1499 aa33.59■■■□□ 2.97
PNKP-201ENST00000322344 DNMBPQ6XZF7 1577 aa33.55■■■□□ 2.96
PNKP-201ENST00000322344 CARMIL1Q5VZK9 1371 aa33.54■■■□□ 2.96
PNKP-201ENST00000322344 ABCA10Q8WWZ4 1543 aa33.42■■■□□ 2.94
PNKP-201ENST00000322344 TOPBP1Q92547 1522 aa33.42■■■□□ 2.94
PNKP-201ENST00000322344 KANK4Q5T7N3 995 aaPredicted RBP33.41■■■□□ 2.94
PNKP-201ENST00000322344 RRBP1Q9P2E9 1410 aaKnown RBP33.4■■■□□ 2.94
PNKP-201ENST00000322344 LAMC3Q9Y6N6 1575 aa33.38■■■□□ 2.93
PNKP-201ENST00000322344 MAP3K1Q13233 1512 aa33.36■■■□□ 2.93
PNKP-201ENST00000322344 POLA1P09884 1462 aaPredicted RBP33.36■■■□□ 2.93
PNKP-201ENST00000322344 DIEXFQ68CQ4 756 aaKnown RBP33.33■■■□□ 2.93
PNKP-201ENST00000322344 NESP48681 1621 aa33.33■■■□□ 2.93
PNKP-201ENST00000322344 RAD54L2Q9Y4B4 1467 aa33.29■■■□□ 2.92
PNKP-201ENST00000322344 CLSPNQ9HAW4 1339 aa33.27■■■□□ 2.92
PNKP-201ENST00000322344 ZNF316A6NFI3 1004 aaPredicted RBP33.27■■■□□ 2.92
PNKP-201ENST00000322344 CUL7Q14999 1698 aa33.26■■■□□ 2.91
PNKP-201ENST00000322344 TIAM1Q13009 1591 aa33.24■■■□□ 2.91
PNKP-201ENST00000322344 FHAD1B1AJZ9 1412 aa33.23■■■□□ 2.91
PNKP-201ENST00000322344 CCNB3Q8WWL7 1395 aa33.2■■■□□ 2.91
PNKP-201ENST00000322344 URB2Q14146 1524 aaKnown RBP33.15■■■□□ 2.9
PNKP-201ENST00000322344 WDR97A6NE52 1622 aa33.14■■■□□ 2.9
PNKP-201ENST00000322344 EFCAB5A4FU69 1503 aa33.14■■■□□ 2.9
PNKP-201ENST00000322344 PDS5BQ9NTI5 1447 aa33.13■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms