RNA–Protein interactions for RNA: ENST00000510558.6

SNF8-209, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 5

Gene SNF8, Length 1,051 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-209ENST00000510558 NISCHQ9Y2I1 1504 aa56.84■■■■■ 6.69
SNF8-209ENST00000510558 CCDC180Q9P1Z9 1646 aa50.84■■■■■ 5.73
SNF8-209ENST00000510558 ABCC9O60706 1549 aa50.26■■■■■ 5.64
SNF8-209ENST00000510558 RB1CC1Q8TDY2 1594 aa48.1■■■■■ 5.29
SNF8-209ENST00000510558 NACADO15069 1562 aa47.9■■■■■ 5.26
SNF8-209ENST00000510558 DCAF8L2P0C7V8 631 aa47.68■■■■■ 5.22
SNF8-209ENST00000510558 MYO15BQ96JP2 1530 aa47.4■■■■■ 5.18
SNF8-209ENST00000510558 ZCCHC6Q5VYS8 1495 aaKnown RBP47.24■■■■■ 5.15
SNF8-209ENST00000510558 UNC13AQ9UPW8 1703 aa47.08■■■■■ 5.13
SNF8-209ENST00000510558 DCAF1Q9Y4B6 1507 aa47■■■■■ 5.12
SNF8-209ENST00000510558 PABPN1Q86U42 306 aaKnown RBP eCLIP46.83■■■■■ 5.095e-8■■■□□ 16.1
SNF8-209ENST00000510558 BICRAQ9NZM4 1560 aa46.69■■■■■ 5.06
SNF8-209ENST00000510558 DNAJC5BQ9UF47 199 aa46.62■■■■■ 5.05
SNF8-209ENST00000510558 SCRIBQ14160 1630 aa46.34■■■■■ 5.01
SNF8-209ENST00000510558 SHROOM4Q9ULL8 1493 aa46.1■■■■■ 4.97
SNF8-209ENST00000510558 EIF4G1Q04637 1599 aaKnown RBP45.49■■■■■ 4.87
SNF8-209ENST00000510558 CC2D2AQ9P2K1 1620 aa45.45■■■■■ 4.87
SNF8-209ENST00000510558 CECR2Q9BXF3 1484 aa45.21■■■■■ 4.83
SNF8-209ENST00000510558 SMARCA4P51532 1647 aa44.26■■■■■ 4.68
SNF8-209ENST00000510558 NCAPD3P42695 1498 aa44.18■■■■■ 4.66
SNF8-209ENST00000510558 ATAD2BQ9ULI0 1458 aa44.13■■■■■ 4.65
SNF8-209ENST00000510558 BAZ1AQ9NRL2 1556 aaPredicted RBP44.1■■■■■ 4.65
SNF8-209ENST00000510558 SMARCA2P51531 1590 aa44.06■■■■■ 4.64
SNF8-209ENST00000510558 HMGXB3Q12766 1538 aa43.94■■■■■ 4.63
SNF8-209ENST00000510558 PEG3Q9GZU2 1588 aa43.82■■■■■ 4.61
SNF8-209ENST00000510558 MROH2BQ7Z745 1585 aa43.81■■■■■ 4.6
SNF8-209ENST00000510558 BAZ1BQ9UIG0 1483 aaKnown RBP43.75■■■■■ 4.59
SNF8-209ENST00000510558 ERCC6Q03468 1493 aa43.36■■■■■ 4.53
SNF8-209ENST00000510558 WIZO95785 1651 aa43.34■■■■■ 4.53
SNF8-209ENST00000510558 NESP48681 1621 aa43.33■■■■■ 4.53
SNF8-209ENST00000510558 LAMC3Q9Y6N6 1575 aa43.14■■■■■ 4.5
SNF8-209ENST00000510558 CUX2O14529 1486 aa43.1■■■■■ 4.49
SNF8-209ENST00000510558 RSF1Q96T23 1441 aaPredicted RBP43.07■■■■■ 4.49
SNF8-209ENST00000510558 CADPSQ9ULU8 1353 aa42.85■■■■■ 4.45
SNF8-209ENST00000510558 KIF21AQ7Z4S6 1674 aa42.85■■■■■ 4.45
SNF8-209ENST00000510558 PDS5BQ9NTI5 1447 aa42.83■■■■■ 4.45
SNF8-209ENST00000510558 THOC2Q8NI27 1593 aaKnown RBP42.82■■■■■ 4.45
SNF8-209ENST00000510558 TOP2AP11388 1531 aaKnown RBP42.82■■■■■ 4.45
SNF8-209ENST00000510558 CFTRP13569 1480 aa42.49■■■■■ 4.39
SNF8-209ENST00000510558 MRC2Q9UBG0 1479 aa42.45■■■■■ 4.39
SNF8-209ENST00000510558 DNAJC5Q9H3Z4 198 aa42.42■■■■■ 4.38
SNF8-209ENST00000510558 CEP164Q9UPV0 1460 aa42.4■■■■■ 4.38
SNF8-209ENST00000510558 FANCD2Q9BXW9 1451 aa42.38■■■■■ 4.38
SNF8-209ENST00000510558 WDR62O43379 1518 aa42.34■■■■■ 4.37
SNF8-209ENST00000510558 CCDC88BA6NC98 1476 aa42.3■■■■■ 4.36
SNF8-209ENST00000510558 PRDM2Q13029 1718 aa42.23■■■■■ 4.35
SNF8-209ENST00000510558 URB2Q14146 1524 aaKnown RBP42.01■■■■■ 4.32
SNF8-209ENST00000510558 TOPBP1Q92547 1522 aa41.65■■■■■ 4.26
SNF8-209ENST00000510558 ABCC8Q09428 1581 aa41.59■■■■■ 4.25
SNF8-209ENST00000510558 DNMBPQ6XZF7 1577 aa41.57■■■■■ 4.25
SNF8-209ENST00000510558 SUPT5HO00267 1087 aaKnown RBP41.54■■■■■ 4.24
SNF8-209ENST00000510558 IFT140Q96RY7 1462 aa41.52■■■■■ 4.24
SNF8-209ENST00000510558 ZNF608Q9ULD9 1512 aaPredicted RBP41.39■■■■■ 4.22
SNF8-209ENST00000510558 TARBP1Q13395 1621 aaKnown RBP41.26■■■■■ 4.2
SNF8-209ENST00000510558 POLA1P09884 1462 aaPredicted RBP41.26■■■■■ 4.2
SNF8-209ENST00000510558 EIF4G3O43432 1585 aaKnown RBP41.25■■■■■ 4.19
SNF8-209ENST00000510558 OSCARQ8IYS5 282 aa41.18■■■■■ 4.18
SNF8-209ENST00000510558 CUX1P39880 1505 aa41.14■■■■■ 4.18
SNF8-209ENST00000510558 FGD5Q6ZNL6 1462 aa41.09■■■■■ 4.17
SNF8-209ENST00000510558 RAD54L2Q9Y4B4 1467 aa41.09■■■■■ 4.17
SNF8-209ENST00000510558 AQRO60306 1485 aaKnown RBP eCLIP41.07■■■■■ 4.163e-6■■■□□ 17.8
SNF8-209ENST00000510558 SOGA1O94964 1423 aa41.06■■■■■ 4.16
SNF8-209ENST00000510558 TDRD9Q8NDG6 1382 aaKnown RBP40.9■■■■■ 4.14
SNF8-209ENST00000510558 WDR97A6NE52 1622 aa40.89■■■■■ 4.14
SNF8-209ENST00000510558 CHD1O14646 1710 aa40.87■■■■■ 4.13
SNF8-209ENST00000510558 TRIM41Q8WV44 630 aa40.79■■■■■ 4.12
SNF8-209ENST00000510558 SNAPC4Q5SXM2 1469 aa40.7■■■■■ 4.11
SNF8-209ENST00000510558 FBLN2P98095 1184 aa40.67■■■■■ 4.1
SNF8-209ENST00000510558 BIVM-ERCC5R4GMW8 1640 aa40.67■■■■■ 4.1
SNF8-209ENST00000510558 GRIN2BQ13224 1484 aa40.66■■■■■ 4.1
SNF8-209ENST00000510558 RIMBP3CA6NJZ7 1639 aa40.66■■■■■ 4.1
SNF8-209ENST00000510558 RIMBP3BA6NNM3 1639 aa40.66■■■■■ 4.1
SNF8-209ENST00000510558 RIMBP3Q9UFD9 1639 aa40.66■■■■■ 4.1
SNF8-209ENST00000510558 ABCA10Q8WWZ4 1543 aa40.65■■■■■ 4.1
SNF8-209ENST00000510558 WRNQ14191 1432 aaPredicted RBP eCLIP40.64■■■■■ 4.1
SNF8-209ENST00000510558 TOP2BQ02880 1626 aa40.64■■■■■ 4.1
SNF8-209ENST00000510558 MAGI1Q96QZ7 1491 aaPredicted RBP40.62■■■■■ 4.09
SNF8-209ENST00000510558 PBRM1Q86U86 1689 aa40.61■■■■■ 4.09
SNF8-209ENST00000510558 SYNJ1O43426 1573 aa40.61■■■■■ 4.09
SNF8-209ENST00000510558 GAPVD1Q14C86 1478 aa40.59■■■■■ 4.09
SNF8-209ENST00000510558 ABCA5Q8WWZ7 1642 aa40.57■■■■■ 4.09
SNF8-209ENST00000510558 ARHGEF11O15085 1522 aa40.57■■■■■ 4.08
SNF8-209ENST00000510558 SYNJ2O15056 1496 aa40.47■■■■■ 4.07
SNF8-209ENST00000510558 CHMP7Q8WUX9 453 aaPredicted RBP40.47■■■■■ 4.07
SNF8-209ENST00000510558 CLASP1Q7Z460 1538 aa40.37■■■■■ 4.05
SNF8-209ENST00000510558 ADAMTS12P58397 1594 aa40.23■■■■■ 4.03
SNF8-209ENST00000510558 ARAP1Q96P48 1450 aa40.2■■■■■ 4.03
SNF8-209ENST00000510558 CYB5RLQ6IPT4 315 aa40.18■■■■■ 4.02
SNF8-209ENST00000510558 ERICH3Q5RHP9 1530 aa40.16■■■■■ 4.02
SNF8-209ENST00000510558 GRIN2AQ12879 1464 aa40.15■■■■■ 4.02
SNF8-209ENST00000510558 FHAD1B1AJZ9 1412 aa40.09■■■■■ 4.01
SNF8-209ENST00000510558 CEP170Q5SW79 1584 aa40■■■■□ 3.99
SNF8-209ENST00000510558 NUP160Q12769 1436 aa39.99■■■■□ 3.99
SNF8-209ENST00000510558 KIF27Q86VH2 1401 aa39.82■■■■□ 3.97
SNF8-209ENST00000510558 SHROOM2Q13796 1616 aa39.78■■■■□ 3.96
SNF8-209ENST00000510558 ERCC6L2Q5T890 1561 aa39.77■■■■□ 3.96
SNF8-209ENST00000510558 IGF1RP08069 1367 aa39.72■■■■□ 3.95
SNF8-209ENST00000510558 CUL7Q14999 1698 aa39.71■■■■□ 3.95
SNF8-209ENST00000510558 RUSC2Q8N2Y8 1516 aa39.65■■■■□ 3.94
SNF8-209ENST00000510558 TRHP20396 242 aaPredicted RBP39.56■■■■□ 3.92
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms