RNA–Protein interactions for RNA: ENST00000509989.5

SNF8-206, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 3

Gene SNF8, Length 677 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-206ENST00000509989 NISCHQ9Y2I1 1504 aa33.29■■■□□ 2.92
SNF8-206ENST00000509989 CCDC180Q9P1Z9 1646 aa29.59■■■□□ 2.33
SNF8-206ENST00000509989 ABCC9O60706 1549 aa29.12■■■□□ 2.25
SNF8-206ENST00000509989 DCAF8L2P0C7V8 631 aa27.86■■■□□ 2.05
SNF8-206ENST00000509989 RB1CC1Q8TDY2 1594 aa27.86■■■□□ 2.05
SNF8-206ENST00000509989 NACADO15069 1562 aa27.78■■■□□ 2.04
SNF8-206ENST00000509989 ZCCHC6Q5VYS8 1495 aaKnown RBP27.71■■■□□ 2.03
SNF8-206ENST00000509989 MYO15BQ96JP2 1530 aa27.53■■■□□ 2
SNF8-206ENST00000509989 UNC13AQ9UPW8 1703 aa27.47■■□□□ 1.99
SNF8-206ENST00000509989 DCAF1Q9Y4B6 1507 aa27.44■■□□□ 1.98
SNF8-206ENST00000509989 PABPN1Q86U42 306 aaKnown RBP eCLIP27.22■■□□□ 1.955e-8■■■□□ 16.1
SNF8-206ENST00000509989 BICRAQ9NZM4 1560 aa27.18■■□□□ 1.94
SNF8-206ENST00000509989 SCRIBQ14160 1630 aa27.12■■□□□ 1.93
SNF8-206ENST00000509989 DNAJC5BQ9UF47 199 aa26.88■■□□□ 1.89
SNF8-206ENST00000509989 SHROOM4Q9ULL8 1493 aa26.58■■□□□ 1.85
SNF8-206ENST00000509989 EIF4G1Q04637 1599 aaKnown RBP26.38■■□□□ 1.81
SNF8-206ENST00000509989 CC2D2AQ9P2K1 1620 aa26.33■■□□□ 1.81
SNF8-206ENST00000509989 CECR2Q9BXF3 1484 aa26.1■■□□□ 1.77
SNF8-206ENST00000509989 SMARCA4P51532 1647 aa25.88■■□□□ 1.73
SNF8-206ENST00000509989 MROH2BQ7Z745 1585 aa25.74■■□□□ 1.71
SNF8-206ENST00000509989 BAZ1AQ9NRL2 1556 aaPredicted RBP25.74■■□□□ 1.71
SNF8-206ENST00000509989 ATAD2BQ9ULI0 1458 aa25.72■■□□□ 1.71
SNF8-206ENST00000509989 NCAPD3P42695 1498 aa25.66■■□□□ 1.7
SNF8-206ENST00000509989 SMARCA2P51531 1590 aa25.61■■□□□ 1.69
SNF8-206ENST00000509989 PEG3Q9GZU2 1588 aa25.56■■□□□ 1.68
SNF8-206ENST00000509989 HMGXB3Q12766 1538 aa25.53■■□□□ 1.68
SNF8-206ENST00000509989 WIZO95785 1651 aa25.51■■□□□ 1.67
SNF8-206ENST00000509989 BAZ1BQ9UIG0 1483 aaKnown RBP25.47■■□□□ 1.67
SNF8-206ENST00000509989 RSF1Q96T23 1441 aaPredicted RBP25.37■■□□□ 1.65
SNF8-206ENST00000509989 NESP48681 1621 aa25.24■■□□□ 1.63
SNF8-206ENST00000509989 TOP2AP11388 1531 aaKnown RBP25.1■■□□□ 1.61
SNF8-206ENST00000509989 LAMC3Q9Y6N6 1575 aa24.99■■□□□ 1.59
SNF8-206ENST00000509989 ERCC6Q03468 1493 aa24.98■■□□□ 1.59
SNF8-206ENST00000509989 KIF21AQ7Z4S6 1674 aa24.95■■□□□ 1.58
SNF8-206ENST00000509989 CADPSQ9ULU8 1353 aa24.91■■□□□ 1.58
SNF8-206ENST00000509989 CCDC88BA6NC98 1476 aa24.85■■□□□ 1.57
SNF8-206ENST00000509989 THOC2Q8NI27 1593 aaKnown RBP24.82■■□□□ 1.56
SNF8-206ENST00000509989 CFTRP13569 1480 aa24.77■■□□□ 1.56
SNF8-206ENST00000509989 PDS5BQ9NTI5 1447 aa24.76■■□□□ 1.55
SNF8-206ENST00000509989 SUPT5HO00267 1087 aaKnown RBP24.71■■□□□ 1.55
SNF8-206ENST00000509989 CUX2O14529 1486 aa24.7■■□□□ 1.54
SNF8-206ENST00000509989 PRDM2Q13029 1718 aa24.66■■□□□ 1.54
SNF8-206ENST00000509989 FANCD2Q9BXW9 1451 aa24.66■■□□□ 1.54
SNF8-206ENST00000509989 CEP164Q9UPV0 1460 aa24.6■■□□□ 1.53
SNF8-206ENST00000509989 MRC2Q9UBG0 1479 aa24.59■■□□□ 1.53
SNF8-206ENST00000509989 WDR62O43379 1518 aa24.54■■□□□ 1.52
SNF8-206ENST00000509989 URB2Q14146 1524 aaKnown RBP24.5■■□□□ 1.51
SNF8-206ENST00000509989 TOPBP1Q92547 1522 aa24.29■■□□□ 1.48
SNF8-206ENST00000509989 DNMBPQ6XZF7 1577 aa24.23■■□□□ 1.47
SNF8-206ENST00000509989 CUX1P39880 1505 aa24.14■■□□□ 1.45
SNF8-206ENST00000509989 ZNF608Q9ULD9 1512 aaPredicted RBP24.12■■□□□ 1.45
SNF8-206ENST00000509989 ABCC8Q09428 1581 aa24.12■■□□□ 1.45
SNF8-206ENST00000509989 POLA1P09884 1462 aaPredicted RBP24.08■■□□□ 1.45
SNF8-206ENST00000509989 TARBP1Q13395 1621 aaKnown RBP24.08■■□□□ 1.45
SNF8-206ENST00000509989 DNAJC5Q9H3Z4 198 aa24.07■■□□□ 1.44
SNF8-206ENST00000509989 IFT140Q96RY7 1462 aa24.07■■□□□ 1.44
SNF8-206ENST00000509989 RAD54L2Q9Y4B4 1467 aa24.05■■□□□ 1.44
SNF8-206ENST00000509989 FGD5Q6ZNL6 1462 aa24.02■■□□□ 1.44
SNF8-206ENST00000509989 EIF4G3O43432 1585 aaKnown RBP23.99■■□□□ 1.43
SNF8-206ENST00000509989 AQRO60306 1485 aaKnown RBP eCLIP23.94■■□□□ 1.423e-6■■■□□ 17.8
SNF8-206ENST00000509989 SYNJ1O43426 1573 aa23.94■■□□□ 1.42
SNF8-206ENST00000509989 SOGA1O94964 1423 aa23.93■■□□□ 1.42
SNF8-206ENST00000509989 WDR97A6NE52 1622 aa23.89■■□□□ 1.42
SNF8-206ENST00000509989 BIVM-ERCC5R4GMW8 1640 aa23.88■■□□□ 1.41
SNF8-206ENST00000509989 TDRD9Q8NDG6 1382 aaKnown RBP23.88■■□□□ 1.41
SNF8-206ENST00000509989 WRNQ14191 1432 aaPredicted RBP eCLIP23.86■■□□□ 1.41
SNF8-206ENST00000509989 TOP2BQ02880 1626 aa23.85■■□□□ 1.41
SNF8-206ENST00000509989 CHD1O14646 1710 aa23.76■■□□□ 1.39
SNF8-206ENST00000509989 ABCA10Q8WWZ4 1543 aa23.73■■□□□ 1.39
SNF8-206ENST00000509989 PBRM1Q86U86 1689 aa23.73■■□□□ 1.39
SNF8-206ENST00000509989 ABCA5Q8WWZ7 1642 aa23.71■■□□□ 1.39
SNF8-206ENST00000509989 SNAPC4Q5SXM2 1469 aa23.68■■□□□ 1.38
SNF8-206ENST00000509989 OSCARQ8IYS5 282 aa23.67■■□□□ 1.38
SNF8-206ENST00000509989 GAPVD1Q14C86 1478 aa23.66■■□□□ 1.38
SNF8-206ENST00000509989 GRIN2BQ13224 1484 aa23.63■■□□□ 1.37
SNF8-206ENST00000509989 FBLN2P98095 1184 aa23.61■■□□□ 1.37
SNF8-206ENST00000509989 MAGI1Q96QZ7 1491 aaPredicted RBP23.56■■□□□ 1.36
SNF8-206ENST00000509989 SYNJ2O15056 1496 aa23.49■■□□□ 1.35
SNF8-206ENST00000509989 ADAMTS12P58397 1594 aa23.48■■□□□ 1.35
SNF8-206ENST00000509989 CHMP7Q8WUX9 453 aaPredicted RBP23.46■■□□□ 1.35
SNF8-206ENST00000509989 RIMBP3CA6NJZ7 1639 aa23.45■■□□□ 1.34
SNF8-206ENST00000509989 RIMBP3BA6NNM3 1639 aa23.45■■□□□ 1.34
SNF8-206ENST00000509989 RIMBP3Q9UFD9 1639 aa23.45■■□□□ 1.34
SNF8-206ENST00000509989 ERICH3Q5RHP9 1530 aa23.42■■□□□ 1.34
SNF8-206ENST00000509989 CLASP1Q7Z460 1538 aa23.42■■□□□ 1.34
SNF8-206ENST00000509989 ARHGEF11O15085 1522 aa23.38■■□□□ 1.33
SNF8-206ENST00000509989 GRIN2AQ12879 1464 aa23.37■■□□□ 1.33
SNF8-206ENST00000509989 CEP170Q5SW79 1584 aa23.35■■□□□ 1.33
SNF8-206ENST00000509989 FHAD1B1AJZ9 1412 aa23.34■■□□□ 1.33
SNF8-206ENST00000509989 RUSC2Q8N2Y8 1516 aa23.33■■□□□ 1.33
SNF8-206ENST00000509989 TRIM41Q8WV44 630 aa23.33■■□□□ 1.33
SNF8-206ENST00000509989 IGF1RP08069 1367 aa23.31■■□□□ 1.32
SNF8-206ENST00000509989 KIF27Q86VH2 1401 aa23.31■■□□□ 1.32
SNF8-206ENST00000509989 NUP160Q12769 1436 aa23.26■■□□□ 1.31
SNF8-206ENST00000509989 ARAP1Q96P48 1450 aa23.23■■□□□ 1.31
SNF8-206ENST00000509989 ERCC6L2Q5T890 1561 aa23.23■■□□□ 1.31
SNF8-206ENST00000509989 CUL7Q14999 1698 aa23.21■■□□□ 1.31
SNF8-206ENST00000509989 CYB5RLQ6IPT4 315 aa23.16■■□□□ 1.3
SNF8-206ENST00000509989 SHROOM2Q13796 1616 aa23.15■■□□□ 1.3
SNF8-206ENST00000509989 CARMIL1Q5VZK9 1371 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms