RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-205ENST00000595081 NISCHQ9Y2I1 1504 aa55.08■■■■■ 6.41
PNKP-205ENST00000595081 CCDC180Q9P1Z9 1646 aa48.77■■■■■ 5.4
PNKP-205ENST00000595081 ABCC9O60706 1549 aa47.55■■■■■ 5.2
PNKP-205ENST00000595081 DCAF8L2P0C7V8 631 aa45.97■■■■■ 4.95
PNKP-205ENST00000595081 ZCCHC6Q5VYS8 1495 aaKnown RBP45.95■■■■■ 4.95
PNKP-205ENST00000595081 NACADO15069 1562 aa45.8■■■■■ 4.92
PNKP-205ENST00000595081 RB1CC1Q8TDY2 1594 aa45.79■■■■■ 4.92
PNKP-205ENST00000595081 MYO15BQ96JP2 1530 aa45.59■■■■■ 4.89
PNKP-205ENST00000595081 DCAF1Q9Y4B6 1507 aa45.52■■■■■ 4.88
PNKP-205ENST00000595081 UNC13AQ9UPW8 1703 aa44.76■■■■■ 4.76
PNKP-205ENST00000595081 SCRIBQ14160 1630 aa44.63■■■■■ 4.73
PNKP-205ENST00000595081 PABPN1Q86U42 306 aaKnown RBP eCLIP44.52■■■■■ 4.72
PNKP-205ENST00000595081 BICRAQ9NZM4 1560 aa44.44■■■■■ 4.71
PNKP-205ENST00000595081 SHROOM4Q9ULL8 1493 aa43.9■■■■■ 4.62
PNKP-205ENST00000595081 DNAJC5BQ9UF47 199 aa43.4■■■■■ 4.54
PNKP-205ENST00000595081 EIF4G1Q04637 1599 aaKnown RBP43.23■■■■■ 4.51
PNKP-205ENST00000595081 CC2D2AQ9P2K1 1620 aa42.98■■■■■ 4.47
PNKP-205ENST00000595081 CECR2Q9BXF3 1484 aa42.94■■■■■ 4.46
PNKP-205ENST00000595081 SMARCA4P51532 1647 aa42.68■■■■■ 4.42
PNKP-205ENST00000595081 BAZ1AQ9NRL2 1556 aaPredicted RBP42.65■■■■■ 4.42
PNKP-205ENST00000595081 MROH2BQ7Z745 1585 aa42.5■■■■■ 4.39
PNKP-205ENST00000595081 ATAD2BQ9ULI0 1458 aa42.37■■■■■ 4.37
PNKP-205ENST00000595081 SMARCA2P51531 1590 aa42.31■■■■■ 4.36
PNKP-205ENST00000595081 NCAPD3P42695 1498 aa42.28■■■■■ 4.36
PNKP-205ENST00000595081 PEG3Q9GZU2 1588 aa42.21■■■■■ 4.35
PNKP-205ENST00000595081 RSF1Q96T23 1441 aaPredicted RBP42.12■■■■■ 4.33
PNKP-205ENST00000595081 HMGXB3Q12766 1538 aa42.09■■■■■ 4.33
PNKP-205ENST00000595081 BAZ1BQ9UIG0 1483 aaKnown RBP42.04■■■■■ 4.32
PNKP-205ENST00000595081 WIZO95785 1651 aa42.04■■■■■ 4.32
PNKP-205ENST00000595081 TOP2AP11388 1531 aaKnown RBP41.59■■■■■ 4.25
PNKP-205ENST00000595081 SUPT5HO00267 1087 aaKnown RBP41.33■■■■■ 4.21
PNKP-205ENST00000595081 NESP48681 1621 aa41.25■■■■■ 4.19
PNKP-205ENST00000595081 CCDC88BA6NC98 1476 aa41.13■■■■■ 4.17
PNKP-205ENST00000595081 LAMC3Q9Y6N6 1575 aa41.1■■■■■ 4.17
PNKP-205ENST00000595081 CADPSQ9ULU8 1353 aa41.08■■■■■ 4.17
PNKP-205ENST00000595081 ERCC6Q03468 1493 aa40.93■■■■■ 4.14
PNKP-205ENST00000595081 CFTRP13569 1480 aa40.9■■■■■ 4.14
PNKP-205ENST00000595081 PDS5BQ9NTI5 1447 aa40.83■■■■■ 4.13
PNKP-205ENST00000595081 KIF21AQ7Z4S6 1674 aa40.72■■■■■ 4.11
PNKP-205ENST00000595081 FANCD2Q9BXW9 1451 aa40.63■■■■■ 4.09
PNKP-205ENST00000595081 PRDM2Q13029 1718 aa40.55■■■■■ 4.08
PNKP-205ENST00000595081 CEP164Q9UPV0 1460 aa40.54■■■■■ 4.08
PNKP-205ENST00000595081 THOC2Q8NI27 1593 aaKnown RBP40.51■■■■■ 4.08
PNKP-205ENST00000595081 MRC2Q9UBG0 1479 aa40.42■■■■■ 4.06
PNKP-205ENST00000595081 CUX2O14529 1486 aa40.34■■■■■ 4.05
PNKP-205ENST00000595081 WDR62O43379 1518 aa40.26■■■■■ 4.04
PNKP-205ENST00000595081 URB2Q14146 1524 aaKnown RBP40.21■■■■■ 4.03
PNKP-205ENST00000595081 TOPBP1Q92547 1522 aa40.01■■■■■ 4
PNKP-205ENST00000595081 DNMBPQ6XZF7 1577 aa39.97■■■■□ 3.99
PNKP-205ENST00000595081 ABCC8Q09428 1581 aa39.95■■■■□ 3.99
PNKP-205ENST00000595081 CUX1P39880 1505 aa39.85■■■■□ 3.97
PNKP-205ENST00000595081 POLA1P09884 1462 aaPredicted RBP39.7■■■■□ 3.95
PNKP-205ENST00000595081 WRNQ14191 1432 aaPredicted RBP eCLIP39.68■■■■□ 3.94
PNKP-205ENST00000595081 FGD5Q6ZNL6 1462 aa39.66■■■■□ 3.94
PNKP-205ENST00000595081 IFT140Q96RY7 1462 aa39.66■■■■□ 3.94
PNKP-205ENST00000595081 SYNJ1O43426 1573 aa39.59■■■■□ 3.93
PNKP-205ENST00000595081 RAD54L2Q9Y4B4 1467 aa39.56■■■■□ 3.92
PNKP-205ENST00000595081 SOGA1O94964 1423 aa39.54■■■■□ 3.92
PNKP-205ENST00000595081 TOP2BQ02880 1626 aa39.54■■■■□ 3.92
PNKP-205ENST00000595081 TARBP1Q13395 1621 aaKnown RBP39.54■■■■□ 3.92
PNKP-205ENST00000595081 BIVM-ERCC5R4GMW8 1640 aa39.52■■■■□ 3.92
PNKP-205ENST00000595081 ZNF608Q9ULD9 1512 aaPredicted RBP39.51■■■■□ 3.92
PNKP-205ENST00000595081 EIF4G3O43432 1585 aaKnown RBP39.33■■■■□ 3.89
PNKP-205ENST00000595081 AQRO60306 1485 aaKnown RBP eCLIP39.33■■■■□ 3.895e-6■■■□□ 16.9
PNKP-205ENST00000595081 TDRD9Q8NDG6 1382 aaKnown RBP39.32■■■■□ 3.88
PNKP-205ENST00000595081 WDR97A6NE52 1622 aa39.27■■■■□ 3.88
PNKP-205ENST00000595081 ABCA10Q8WWZ4 1543 aa39.25■■■■□ 3.87
PNKP-205ENST00000595081 GAPVD1Q14C86 1478 aa39.08■■■■□ 3.85
PNKP-205ENST00000595081 ABCA5Q8WWZ7 1642 aa39.07■■■■□ 3.85
PNKP-205ENST00000595081 GRIN2BQ13224 1484 aa39.02■■■■□ 3.84
PNKP-205ENST00000595081 TRIM41Q8WV44 630 aa38.98■■■■□ 3.83
PNKP-205ENST00000595081 SNAPC4Q5SXM2 1469 aa38.97■■■■□ 3.83
PNKP-205ENST00000595081 PBRM1Q86U86 1689 aa38.96■■■■□ 3.83
PNKP-205ENST00000595081 MAGI1Q96QZ7 1491 aaPredicted RBP38.87■■■■□ 3.81
PNKP-205ENST00000595081 KIF27Q86VH2 1401 aa38.82■■■■□ 3.81
PNKP-205ENST00000595081 FBLN2P98095 1184 aa38.81■■■■□ 3.8
PNKP-205ENST00000595081 CHD1O14646 1710 aa38.77■■■■□ 3.8
PNKP-205ENST00000595081 DNAJC5Q9H3Z4 198 aa38.77■■■■□ 3.8
PNKP-205ENST00000595081 ERICH3Q5RHP9 1530 aa38.77■■■■□ 3.8
PNKP-205ENST00000595081 OSCARQ8IYS5 282 aa38.75■■■■□ 3.79
PNKP-205ENST00000595081 SYNJ2O15056 1496 aa38.73■■■■□ 3.79
PNKP-205ENST00000595081 CHIC1Q5VXU3 224 aa38.72■■■■□ 3.79
PNKP-205ENST00000595081 CHMP7Q8WUX9 453 aaPredicted RBP38.71■■■■□ 3.79
PNKP-205ENST00000595081 ADAMTS12P58397 1594 aa38.7■■■■□ 3.79
PNKP-205ENST00000595081 IGF1RP08069 1367 aa38.64■■■■□ 3.78
PNKP-205ENST00000595081 RUSC2Q8N2Y8 1516 aa38.63■■■■□ 3.78
PNKP-205ENST00000595081 FHAD1B1AJZ9 1412 aa38.63■■■■□ 3.77
PNKP-205ENST00000595081 GRIN2AQ12879 1464 aa38.54■■■■□ 3.76
PNKP-205ENST00000595081 CUL7Q14999 1698 aa38.47■■■■□ 3.75
PNKP-205ENST00000595081 CARMIL1Q5VZK9 1371 aa38.42■■■■□ 3.74
PNKP-205ENST00000595081 CLASP1Q7Z460 1538 aa38.36■■■■□ 3.73
PNKP-205ENST00000595081 CEP170Q5SW79 1584 aa38.35■■■■□ 3.73
PNKP-205ENST00000595081 NUP160Q12769 1436 aa38.34■■■■□ 3.73
PNKP-205ENST00000595081 EEA1Q15075 1411 aa38.23■■■■□ 3.71
PNKP-205ENST00000595081 FAM9AQ8IZU1 332 aaPredicted RBP38.23■■■■□ 3.71
PNKP-205ENST00000595081 RAPGEF2Q9Y4G8 1499 aa38.21■■■■□ 3.71
PNKP-205ENST00000595081 CSRNP3Q8WYN3 585 aa38.2■■■■□ 3.71
PNKP-205ENST00000595081 PRXQ9BXM0 1461 aa38.15■■■■□ 3.7
PNKP-205ENST00000595081 ARHGEF11O15085 1522 aa38.14■■■■□ 3.7
PNKP-205ENST00000595081 RIMBP3CA6NJZ7 1639 aa38.11■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 155.1 ms