RNA–Protein interactions for RNA: ENST00000596014.5

PNKP-207, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 1,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-207ENST00000596014 NISCHQ9Y2I1 1504 aa46.3■■■■■ 5
PNKP-207ENST00000596014 CCDC180Q9P1Z9 1646 aa40.99■■■■■ 4.15
PNKP-207ENST00000596014 ABCC9O60706 1549 aa39.82■■■■□ 3.97
PNKP-207ENST00000596014 ZCCHC6Q5VYS8 1495 aaKnown RBP38.62■■■■□ 3.77
PNKP-207ENST00000596014 DCAF8L2P0C7V8 631 aa38.6■■■■□ 3.77
PNKP-207ENST00000596014 NACADO15069 1562 aa38.48■■■■□ 3.75
PNKP-207ENST00000596014 RB1CC1Q8TDY2 1594 aa38.43■■■■□ 3.74
PNKP-207ENST00000596014 MYO15BQ96JP2 1530 aa38.34■■■■□ 3.73
PNKP-207ENST00000596014 DCAF1Q9Y4B6 1507 aa38.31■■■■□ 3.72
PNKP-207ENST00000596014 UNC13AQ9UPW8 1703 aa37.62■■■■□ 3.61
PNKP-207ENST00000596014 SCRIBQ14160 1630 aa37.45■■■■□ 3.59
PNKP-207ENST00000596014 PABPN1Q86U42 306 aaKnown RBP eCLIP37.3■■■■□ 3.565e-6■■■■□ 22.2
PNKP-207ENST00000596014 BICRAQ9NZM4 1560 aa37.28■■■■□ 3.56
PNKP-207ENST00000596014 SHROOM4Q9ULL8 1493 aa36.86■■■■□ 3.49
PNKP-207ENST00000596014 DNAJC5BQ9UF47 199 aa36.29■■■■□ 3.4
PNKP-207ENST00000596014 EIF4G1Q04637 1599 aaKnown RBP36.26■■■■□ 3.39
PNKP-207ENST00000596014 CECR2Q9BXF3 1484 aa36.05■■■■□ 3.36
PNKP-207ENST00000596014 CC2D2AQ9P2K1 1620 aa36.04■■■■□ 3.36
PNKP-207ENST00000596014 SMARCA4P51532 1647 aa35.85■■■■□ 3.33
PNKP-207ENST00000596014 BAZ1AQ9NRL2 1556 aaPredicted RBP35.85■■■■□ 3.33
PNKP-207ENST00000596014 MROH2BQ7Z745 1585 aa35.7■■■■□ 3.3
PNKP-207ENST00000596014 ATAD2BQ9ULI0 1458 aa35.58■■■■□ 3.29
PNKP-207ENST00000596014 SMARCA2P51531 1590 aa35.54■■■■□ 3.28
PNKP-207ENST00000596014 NCAPD3P42695 1498 aa35.51■■■■□ 3.28
PNKP-207ENST00000596014 PEG3Q9GZU2 1588 aa35.5■■■■□ 3.27
PNKP-207ENST00000596014 RSF1Q96T23 1441 aaPredicted RBP35.42■■■■□ 3.26
PNKP-207ENST00000596014 WIZO95785 1651 aa35.34■■■■□ 3.25
PNKP-207ENST00000596014 HMGXB3Q12766 1538 aa35.34■■■■□ 3.25
PNKP-207ENST00000596014 BAZ1BQ9UIG0 1483 aaKnown RBP35.29■■■■□ 3.24
PNKP-207ENST00000596014 TOP2AP11388 1531 aaKnown RBP34.95■■■■□ 3.19
PNKP-207ENST00000596014 SUPT5HO00267 1087 aaKnown RBP34.8■■■■□ 3.16
PNKP-207ENST00000596014 CCDC88BA6NC98 1476 aa34.57■■■■□ 3.12
PNKP-207ENST00000596014 NESP48681 1621 aa34.57■■■■□ 3.12
PNKP-207ENST00000596014 LAMC3Q9Y6N6 1575 aa34.51■■■■□ 3.11
PNKP-207ENST00000596014 CADPSQ9ULU8 1353 aa34.49■■■■□ 3.11
PNKP-207ENST00000596014 CFTRP13569 1480 aa34.36■■■■□ 3.09
PNKP-207ENST00000596014 ERCC6Q03468 1493 aa34.28■■■■□ 3.08
PNKP-207ENST00000596014 PDS5BQ9NTI5 1447 aa34.27■■■■□ 3.08
PNKP-207ENST00000596014 KIF21AQ7Z4S6 1674 aa34.17■■■■□ 3.06
PNKP-207ENST00000596014 PRDM2Q13029 1718 aa34.13■■■■□ 3.05
PNKP-207ENST00000596014 FANCD2Q9BXW9 1451 aa34.09■■■■□ 3.05
PNKP-207ENST00000596014 CEP164Q9UPV0 1460 aa34■■■■□ 3.03
PNKP-207ENST00000596014 THOC2Q8NI27 1593 aaKnown RBP33.95■■■■□ 3.02
PNKP-207ENST00000596014 MRC2Q9UBG0 1479 aa33.89■■■■□ 3.02
PNKP-207ENST00000596014 CUX2O14529 1486 aa33.78■■■■□ 3
PNKP-207ENST00000596014 WDR62O43379 1518 aa33.77■■■■□ 3
PNKP-207ENST00000596014 URB2Q14146 1524 aaKnown RBP33.74■■■□□ 2.99
PNKP-207ENST00000596014 ABCC8Q09428 1581 aa33.6■■■□□ 2.97
PNKP-207ENST00000596014 TOPBP1Q92547 1522 aa33.59■■■□□ 2.97
PNKP-207ENST00000596014 DNMBPQ6XZF7 1577 aa33.56■■■□□ 2.96
PNKP-207ENST00000596014 CUX1P39880 1505 aa33.46■■■□□ 2.95
PNKP-207ENST00000596014 WRNQ14191 1432 aaPredicted RBP eCLIP33.37■■■□□ 2.93
PNKP-207ENST00000596014 POLA1P09884 1462 aaPredicted RBP33.33■■■□□ 2.93
PNKP-207ENST00000596014 FGD5Q6ZNL6 1462 aa33.29■■■□□ 2.92
PNKP-207ENST00000596014 IFT140Q96RY7 1462 aa33.28■■■□□ 2.92
PNKP-207ENST00000596014 SYNJ1O43426 1573 aa33.28■■■□□ 2.92
PNKP-207ENST00000596014 TOP2BQ02880 1626 aa33.26■■■□□ 2.92
PNKP-207ENST00000596014 BIVM-ERCC5R4GMW8 1640 aa33.25■■■□□ 2.91
PNKP-207ENST00000596014 SOGA1O94964 1423 aa33.21■■■□□ 2.91
PNKP-207ENST00000596014 TARBP1Q13395 1621 aaKnown RBP33.2■■■□□ 2.91
PNKP-207ENST00000596014 RAD54L2Q9Y4B4 1467 aa33.2■■■□□ 2.9
PNKP-207ENST00000596014 ZNF608Q9ULD9 1512 aaPredicted RBP33.13■■■□□ 2.89
PNKP-207ENST00000596014 WDR97A6NE52 1622 aa33■■■□□ 2.87
PNKP-207ENST00000596014 EIF4G3O43432 1585 aaKnown RBP32.99■■■□□ 2.87
PNKP-207ENST00000596014 AQRO60306 1485 aaKnown RBP eCLIP32.99■■■□□ 2.872e-6■■■■□ 20.5
PNKP-207ENST00000596014 TDRD9Q8NDG6 1382 aaKnown RBP32.99■■■□□ 2.87
PNKP-207ENST00000596014 ABCA10Q8WWZ4 1543 aa32.99■■■□□ 2.87
PNKP-207ENST00000596014 TRIM41Q8WV44 630 aa32.85■■■□□ 2.85
PNKP-207ENST00000596014 GAPVD1Q14C86 1478 aa32.82■■■□□ 2.84
PNKP-207ENST00000596014 ABCA5Q8WWZ7 1642 aa32.82■■■□□ 2.84
PNKP-207ENST00000596014 GRIN2BQ13224 1484 aa32.76■■■□□ 2.84
PNKP-207ENST00000596014 PBRM1Q86U86 1689 aa32.73■■■□□ 2.83
PNKP-207ENST00000596014 CHIC1Q5VXU3 224 aa32.67■■■□□ 2.82
PNKP-207ENST00000596014 SNAPC4Q5SXM2 1469 aa32.66■■■□□ 2.82
PNKP-207ENST00000596014 KIF27Q86VH2 1401 aa32.65■■■□□ 2.82
PNKP-207ENST00000596014 MAGI1Q96QZ7 1491 aaPredicted RBP32.64■■■□□ 2.82
PNKP-207ENST00000596014 ERICH3Q5RHP9 1530 aa32.59■■■□□ 2.81
PNKP-207ENST00000596014 FBLN2P98095 1184 aa32.54■■■□□ 2.8
PNKP-207ENST00000596014 CHD1O14646 1710 aa32.54■■■□□ 2.8
PNKP-207ENST00000596014 SYNJ2O15056 1496 aa32.51■■■□□ 2.8
PNKP-207ENST00000596014 CHMP7Q8WUX9 453 aaPredicted RBP32.5■■■□□ 2.79
PNKP-207ENST00000596014 IGF1RP08069 1367 aa32.5■■■□□ 2.79
PNKP-207ENST00000596014 OSCARQ8IYS5 282 aa32.5■■■□□ 2.79
PNKP-207ENST00000596014 RUSC2Q8N2Y8 1516 aa32.49■■■□□ 2.79
PNKP-207ENST00000596014 ADAMTS12P58397 1594 aa32.47■■■□□ 2.79
PNKP-207ENST00000596014 FHAD1B1AJZ9 1412 aa32.45■■■□□ 2.78
PNKP-207ENST00000596014 DNAJC5Q9H3Z4 198 aa32.41■■■□□ 2.78
PNKP-207ENST00000596014 CUL7Q14999 1698 aa32.36■■■□□ 2.77
PNKP-207ENST00000596014 GRIN2AQ12879 1464 aa32.35■■■□□ 2.77
PNKP-207ENST00000596014 CARMIL1Q5VZK9 1371 aa32.3■■■□□ 2.76
PNKP-207ENST00000596014 EEA1Q15075 1411 aa32.23■■■□□ 2.75
PNKP-207ENST00000596014 CSRNP3Q8WYN3 585 aa32.19■■■□□ 2.74
PNKP-207ENST00000596014 NUP160Q12769 1436 aa32.18■■■□□ 2.74
PNKP-207ENST00000596014 CEP170Q5SW79 1584 aa32.17■■■□□ 2.74
PNKP-207ENST00000596014 FAM9AQ8IZU1 332 aaPredicted RBP32.17■■■□□ 2.74
PNKP-207ENST00000596014 CLASP1Q7Z460 1538 aa32.16■■■□□ 2.74
PNKP-207ENST00000596014 RAPGEF2Q9Y4G8 1499 aa32.14■■■□□ 2.73
PNKP-207ENST00000596014 PRXQ9BXM0 1461 aa32.11■■■□□ 2.73
PNKP-207ENST00000596014 KIAA0586Q9BVV6 1533 aa31.97■■■□□ 2.71
PNKP-207ENST00000596014 ARHGEF11O15085 1522 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 196 ms