Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 EIF2AK1-202ENST00000422786 782 ntTSL 312.55□□□□□ -0.48e-8■■■□□ 16.2
SF3B1O75533 EIF2AK1-209ENST00000490523 905 ntTSL 29.07□□□□□ -0.968e-8■■■□□ 16.2
SF3B1O75533 KEL-206ENST00000476829 649 ntTSL 316.99■□□□□ 0.315e-6■■■□□ 16.2
SF3B1O75533 KEL-209ENST00000494148 417 ntTSL 312.62□□□□□ -0.395e-6■■■□□ 16.2
SF3B1O75533 NARF-212ENST00000579083 561 ntTSL 47.25□□□□□ -1.252e-12■■■□□ 16.2
SF3B1O75533 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.622e-6■■■□□ 16.1
SF3B1O75533 COPZ1-217ENST00000553009 567 ntTSL 314.69□□□□□ -0.062e-6■■■□□ 16.1
SF3B1O75533 PPIB-203ENST00000561048 1208 ntTSL 1 (best)14.63□□□□□ -0.072e-6■■■□□ 16.1
SF3B1O75533 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC13.54□□□□□ -0.242e-6■■■□□ 16.1
SF3B1O75533 COPZ1-206ENST00000549043 1232 ntTSL 1 (best) BASIC13.3□□□□□ -0.282e-6■■■□□ 16.1
SF3B1O75533 EXOSC9-202ENST00000379663 1529 ntTSL 1 (best) BASIC12.68□□□□□ -0.382e-6■■■□□ 16.1
SF3B1O75533 COPZ1-204ENST00000548281 554 ntTSL 412.59□□□□□ -0.392e-6■■■□□ 16.1
SF3B1O75533 COPZ1-213ENST00000551962 578 ntTSL 512.02□□□□□ -0.492e-6■■■□□ 16.1
SF3B1O75533 COPZ1-214ENST00000552218 797 ntTSL 5 BASIC12.02□□□□□ -0.492e-6■■■□□ 16.1
SF3B1O75533 COPZ1-202ENST00000455864 880 ntTSL 2 BASIC11.9□□□□□ -0.52e-6■■■□□ 16.1
SF3B1O75533 EXOSC9-208ENST00000509980 1317 ntTSL 211.62□□□□□ -0.552e-6■■■□□ 16.1
SF3B1O75533 COPZ1-201ENST00000262061 1897 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.622e-6■■■□□ 16.1
SF3B1O75533 COPZ1-212ENST00000551779 1462 ntAPPRIS ALT1 TSL 2 BASIC10.41□□□□□ -0.742e-6■■■□□ 16.1
SF3B1O75533 COPZ1-209ENST00000550171 1026 ntTSL 210.28□□□□□ -0.762e-6■■■□□ 16.1
SF3B1O75533 COPZ1-208ENST00000550027 553 ntTSL 1 (best)10.22□□□□□ -0.772e-6■■■□□ 16.1
SF3B1O75533 EXOSC9-201ENST00000243498 1481 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.872e-6■■■□□ 16.1
SF3B1O75533 EXOSC9-211ENST00000512454 1543 ntTSL 1 (best) BASIC9.21□□□□□ -0.932e-6■■■□□ 16.1
SF3B1O75533 COPZ1-211ENST00000551412 548 ntTSL 29.07□□□□□ -0.962e-6■■■□□ 16.1
SF3B1O75533 COPZ1-215ENST00000552362 575 ntTSL 4 BASIC9.07□□□□□ -0.962e-6■■■□□ 16.1
SF3B1O75533 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC7.32□□□□□ -1.242e-6■■■□□ 16.1
SF3B1O75533 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.93□□□□□ -1.32e-6■■■□□ 16.1
SF3B1O75533 EXOSC9-212ENST00000513654 3882 ntTSL 26.81□□□□□ -1.322e-6■■■□□ 16.1
SF3B1O75533 EXOSC9-203ENST00000503139 1204 ntTSL 1 (best)6.47□□□□□ -1.372e-6■■■□□ 16.1
SF3B1O75533 EXOSC9-204ENST00000503236 644 ntTSL 33.73□□□□□ -1.812e-6■■■□□ 16.1
SF3B1O75533 UBR1-205ENST00000564540 735 ntTSL 32.55□□□□□ -22e-6■■■□□ 16.1
SF3B1O75533 UBR1-209ENST00000569243 702 ntTSL 31.49□□□□□ -2.172e-6■■■□□ 16.1
SF3B1O75533 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.163e-6■■■□□ 16
SF3B1O75533 BAG6-245ENST00000437771 2407 ntTSL 515.92■□□□□ 0.141e-6■■■□□ 15.9
SF3B1O75533 BAG6-244ENST00000435080 1710 ntTSL 515.48■□□□□ 0.071e-6■■■□□ 15.9
SF3B1O75533 FDXR-220ENST00000610946 529 ntTSL 521.08■□□□□ 0.971e-5■■■□□ 15.9
SF3B1O75533 FDXR-207ENST00000577932 572 ntTSL 220.59■□□□□ 0.891e-5■■■□□ 15.9
SF3B1O75533 EP400NL-213ENST00000613241 455 ntTSL 314.19□□□□□ -0.141e-5■■■□□ 15.9
SF3B1O75533 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.271e-5■■■□□ 15.9
SF3B1O75533 SERINC1-201ENST00000339697 3137 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71e-5■■■□□ 15.9
SF3B1O75533 STARD4-212ENST00000512160 3500 ntTSL 2 BASIC9.83□□□□□ -0.841e-5■■■□□ 15.9
SF3B1O75533 PCNT-202ENST00000418394 796 ntAPPRIS ALT2 TSL 38.31□□□□□ -1.081e-5■■■□□ 15.9
SF3B1O75533 NBAS-207ENST00000441755 844 ntTSL 35.95□□□□□ -1.461e-5■■■□□ 15.9
SF3B1O75533 NBAS-205ENST00000429842 638 ntTSL 34.83□□□□□ -1.641e-5■■■□□ 15.9
SF3B1O75533 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.681e-5■■■□□ 15.9
SF3B1O75533 INTS13-208ENST00000542392 668 ntTSL 54.24□□□□□ -1.731e-5■■■□□ 15.9
SF3B1O75533 PRPF38B-205ENST00000485810 1352 ntTSL 23.83□□□□□ -1.81e-5■■■□□ 15.9
SF3B1O75533 PNISR-204ENST00000463021 1939 ntTSL 1 (best)3.45□□□□□ -1.861e-5■■■□□ 15.9
SF3B1O75533 INTS13-202ENST00000536232 460 ntTSL 32.87□□□□□ -1.951e-5■■■□□ 15.9
SF3B1O75533 INTS13-205ENST00000538155 1378 ntTSL 52.85□□□□□ -1.951e-5■■■□□ 15.9
SF3B1O75533 THOC2-206ENST00000433883 876 ntTSL 52.35□□□□□ -2.031e-5■■■□□ 15.9
SF3B1O75533 SNHG4-203ENST00000506188 801 ntTSL 415.39■□□□□ 0.054e-7■■■□□ 15.8
SF3B1O75533 SNHG4-201ENST00000448190 542 ntTSL 414.48□□□□□ -0.094e-7■■■□□ 15.8
SF3B1O75533 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC14.21□□□□□ -0.134e-7■■■□□ 15.8
SF3B1O75533 SNHG4-202ENST00000505522 629 ntTSL 1 (best)13.47□□□□□ -0.254e-7■■■□□ 15.8
SF3B1O75533 SNHG4-208ENST00000514110 679 ntTSL 1 (best)13.47□□□□□ -0.254e-7■■■□□ 15.8
SF3B1O75533 SNHG4-207ENST00000513259 444 ntTSL 59.84□□□□□ -0.834e-7■■■□□ 15.8
SF3B1O75533 SNHG4-205ENST00000507692 575 ntTSL 55.48□□□□□ -1.534e-7■■■□□ 15.8
SF3B1O75533 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.084e-6■■■□□ 15.7
SF3B1O75533 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.14e-6■■■□□ 15.7
SF3B1O75533 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.124e-6■■■□□ 15.7
SF3B1O75533 PRAME-203ENST00000402697 2057 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.254e-6■■■□□ 15.7
SF3B1O75533 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.264e-6■■■□□ 15.7
SF3B1O75533 PRAME-213ENST00000492657 2831 ntTSL 1 (best)13.15□□□□□ -0.34e-6■■■□□ 15.7
SF3B1O75533 UBA5-210ENST00000489361 417 ntTSL 34.33□□□□□ -1.722e-8■■■□□ 15.7
SF3B1O75533 DYRK1A-209ENST00000608928 483 ntTSL 523.84■■□□□ 1.412e-6■■■□□ 15.7
SF3B1O75533 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.321e-8■■■□□ 15.7
SF3B1O75533 CBX3-204ENST00000456948 1068 ntTSL 525.31■■□□□ 1.643e-6■■■□□ 15.6
SF3B1O75533 CAPRIN1-204ENST00000526494 399 ntTSL 416.87■□□□□ 0.293e-6■■■□□ 15.6
SF3B1O75533 KIAA0355-206ENST00000589583 582 ntTSL 316.47■□□□□ 0.233e-6■■■□□ 15.6
SF3B1O75533 KIAA0355-204ENST00000588470 632 ntTSL 516.46■□□□□ 0.233e-6■■■□□ 15.6
SF3B1O75533 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.27■□□□□ 0.193e-6■■■□□ 15.6
SF3B1O75533 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.073e-6■■■□□ 15.6
SF3B1O75533 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.073e-6■■■□□ 15.6
SF3B1O75533 RBM12B-203ENST00000518597 579 ntTSL 212.86□□□□□ -0.353e-6■■■□□ 15.6
SF3B1O75533 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC12.29□□□□□ -0.443e-6■■■□□ 15.6
SF3B1O75533 RBM12B-207ENST00000521947 452 ntTSL 312.15□□□□□ -0.463e-6■■■□□ 15.6
SF3B1O75533 DNMT3B-201ENST00000201963 4255 ntTSL 1 (best) BASIC11.54□□□□□ -0.563e-6■■■□□ 15.6
SF3B1O75533 KIAA0355-207ENST00000592124 856 ntTSL 1 (best)11.38□□□□□ -0.593e-6■■■□□ 15.6
SF3B1O75533 RBM12B-205ENST00000520560 588 ntTSL 211.04□□□□□ -0.643e-6■■■□□ 15.6
SF3B1O75533 KIAA0355-201ENST00000299505 6717 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.73e-6■■■□□ 15.6
SF3B1O75533 KIAA0355-203ENST00000588338 561 ntTSL 510.21□□□□□ -0.783e-6■■■□□ 15.6
SF3B1O75533 RBM12B-202ENST00000517700 6001 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.953e-6■■■□□ 15.6
SF3B1O75533 RBM12B-204ENST00000519109 615 ntTSL 27.53□□□□□ -1.23e-6■■■□□ 15.6
SF3B1O75533 AC073869.8-201ENST00000641806 335 ntBASIC5.72□□□□□ -1.493e-6■■■□□ 15.6
SF3B1O75533 CAPRIN1-208ENST00000530008 580 ntTSL 45.52□□□□□ -1.533e-6■■■□□ 15.6
SF3B1O75533 CAPRIN1-211ENST00000532755 565 ntTSL 45.01□□□□□ -1.613e-6■■■□□ 15.6
SF3B1O75533 CAPRIN1-214ENST00000533641 429 ntTSL 42.45□□□□□ -2.023e-6■■■□□ 15.6
SF3B1O75533 CBX3-208ENST00000497498 922 ntTSL 21.89□□□□□ -2.113e-6■■■□□ 15.6
SF3B1O75533 MPP1-215ENST00000488754 553 ntTSL 38.73□□□□□ -1.012e-6■■■□□ 15.6
SF3B1O75533 BIRC6-209ENST00000471232 4226 ntTSL 26.63□□□□□ -1.352e-6■■■□□ 15.6
SF3B1O75533 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.877e-7■■■□□ 15.5
SF3B1O75533 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.347e-7■■■□□ 15.5
SF3B1O75533 GABRE-205ENST00000465405 706 ntTSL 1 (best)9.63□□□□□ -0.872e-8■■■□□ 15.5
SF3B1O75533 GABRE-211ENST00000491339 2072 ntTSL 29.54□□□□□ -0.882e-8■■■□□ 15.5
SF3B1O75533 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.15■□□□□ 0.347e-8■■■□□ 15.5
SF3B1O75533 POTEE-203ENST00000514256 2072 ntTSL 216.1■□□□□ 0.177e-8■■■□□ 15.5
SF3B1O75533 POTEE-202ENST00000358087 2147 ntTSL 214.26□□□□□ -0.137e-8■■■□□ 15.5
SF3B1O75533 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.287e-8■■■□□ 15.5
SF3B1O75533 POTEE-205ENST00000626191 2027 ntTSL 2 BASIC11.83□□□□□ -0.527e-8■■■□□ 15.5
SF3B1O75533 EIF4G2-213ENST00000528839 702 ntTSL 53.97□□□□□ -1.777e-8■■■□□ 15.5
Retrieved 100 of 46,956 protein–RNA pairs in 4774.7 ms