RNA–Protein interactions for RNA: ENST00000402697.5

PRAME-203, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRAME, Length 2,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-203ENST00000402697 NISCHQ9Y2I1 1504 aa27.96■■■□□ 2.07
PRAME-203ENST00000402697 CCDC180Q9P1Z9 1646 aa24.33■■□□□ 1.48
PRAME-203ENST00000402697 ZCCHC6Q5VYS8 1495 aaKnown RBP23.56■■□□□ 1.36
PRAME-203ENST00000402697 DCAF1Q9Y4B6 1507 aa23.11■■□□□ 1.29
PRAME-203ENST00000402697 SHROOM4Q9ULL8 1493 aa23.02■■□□□ 1.28
PRAME-203ENST00000402697 DCAF8L2P0C7V8 631 aa22.89■■□□□ 1.26
PRAME-203ENST00000402697 ABCC9O60706 1549 aa22.77■■□□□ 1.24
PRAME-203ENST00000402697 MYO15BQ96JP2 1530 aa22.75■■□□□ 1.23
PRAME-203ENST00000402697 NACADO15069 1562 aa22.55■■□□□ 1.2
PRAME-203ENST00000402697 SCRIBQ14160 1630 aa22.4■■□□□ 1.18
PRAME-203ENST00000402697 SUPT5HO00267 1087 aaKnown RBP22.4■■□□□ 1.18
PRAME-203ENST00000402697 RB1CC1Q8TDY2 1594 aa22.31■■□□□ 1.16
PRAME-203ENST00000402697 UNC13AQ9UPW8 1703 aa22.02■■□□□ 1.12
PRAME-203ENST00000402697 CHIC1Q5VXU3 224 aa21.92■■□□□ 1.1
PRAME-203ENST00000402697 RSF1Q96T23 1441 aaPredicted RBP21.75■■□□□ 1.07
PRAME-203ENST00000402697 CECR2Q9BXF3 1484 aa21.72■■□□□ 1.07
PRAME-203ENST00000402697 BICRAQ9NZM4 1560 aa21.71■■□□□ 1.07
PRAME-203ENST00000402697 MROH2BQ7Z745 1585 aa21.63■■□□□ 1.05
PRAME-203ENST00000402697 BAZ1AQ9NRL2 1556 aaPredicted RBP21.56■■□□□ 1.04
PRAME-203ENST00000402697 WIZO95785 1651 aa21.49■■□□□ 1.03
PRAME-203ENST00000402697 SMARCA4P51532 1647 aa21.48■■□□□ 1.03
PRAME-203ENST00000402697 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
PRAME-203ENST00000402697 TOP2AP11388 1531 aaKnown RBP21.24■□□□□ 0.99
PRAME-203ENST00000402697 PEG3Q9GZU2 1588 aa21.21■□□□□ 0.99
PRAME-203ENST00000402697 TRIM41Q8WV44 630 aa21.09■□□□□ 0.97
PRAME-203ENST00000402697 SMARCA2P51531 1590 aa21.07■□□□□ 0.96
PRAME-203ENST00000402697 EIF4G1Q04637 1599 aaKnown RBP21.05■□□□□ 0.96
PRAME-203ENST00000402697 ATAD2BQ9ULI0 1458 aa21.03■□□□□ 0.96
PRAME-203ENST00000402697 LOC105371045A0A1W2PR82 267 aa21.03■□□□□ 0.96
PRAME-203ENST00000402697 HRCP23327 699 aa21.03■□□□□ 0.96
PRAME-203ENST00000402697 CCDC88BA6NC98 1476 aa21■□□□□ 0.95
PRAME-203ENST00000402697 BAZ1BQ9UIG0 1483 aaKnown RBP20.92■□□□□ 0.94
PRAME-203ENST00000402697 PCGF6Q9BYE7 350 aa20.92■□□□□ 0.94
PRAME-203ENST00000402697 TRIM26Q12899 539 aaPredicted RBP20.84■□□□□ 0.93
PRAME-203ENST00000402697 HMGXB3Q12766 1538 aa20.83■□□□□ 0.93
PRAME-203ENST00000402697 NCAPD3P42695 1498 aa20.79■□□□□ 0.92
PRAME-203ENST00000402697 ABCC8Q09428 1581 aa20.68■□□□□ 0.9
PRAME-203ENST00000402697 CC2D2AQ9P2K1 1620 aa20.65■□□□□ 0.9
PRAME-203ENST00000402697 FAM9AQ8IZU1 332 aaPredicted RBP20.61■□□□□ 0.89
PRAME-203ENST00000402697 EEA1Q15075 1411 aa20.59■□□□□ 0.89
PRAME-203ENST00000402697 ZEB1P37275 1124 aaPredicted RBP20.52■□□□□ 0.88
PRAME-203ENST00000402697 WRNQ14191 1432 aaPredicted RBP eCLIP20.46■□□□□ 0.87
PRAME-203ENST00000402697 SYNJ1O43426 1573 aa20.44■□□□□ 0.86
PRAME-203ENST00000402697 PRDM2Q13029 1718 aa20.43■□□□□ 0.86
PRAME-203ENST00000402697 CFTRP13569 1480 aa20.41■□□□□ 0.86
PRAME-203ENST00000402697 TNIKQ9UKE5 1360 aa20.36■□□□□ 0.85
PRAME-203ENST00000402697 EHMT2Q96KQ7 1210 aa20.36■□□□□ 0.85
PRAME-203ENST00000402697 TOP2BQ02880 1626 aa20.32■□□□□ 0.84
PRAME-203ENST00000402697 BIVM-ERCC5R4GMW8 1640 aa20.32■□□□□ 0.84
PRAME-203ENST00000402697 SOGA1O94964 1423 aa20.31■□□□□ 0.84
PRAME-203ENST00000402697 CSRNP3Q8WYN3 585 aa20.3■□□□□ 0.84
PRAME-203ENST00000402697 CADPSQ9ULU8 1353 aa20.26■□□□□ 0.83
PRAME-203ENST00000402697 GOLGA3Q08378 1498 aa20.25■□□□□ 0.83
PRAME-203ENST00000402697 RUSC2Q8N2Y8 1516 aa20.25■□□□□ 0.83
PRAME-203ENST00000402697 CEP162Q5TB80 1403 aa20.24■□□□□ 0.83
PRAME-203ENST00000402697 PPARGC1BQ86YN6 1023 aaKnown RBP20.23■□□□□ 0.83
PRAME-203ENST00000402697 CUX1P39880 1505 aa20.22■□□□□ 0.83
PRAME-203ENST00000402697 KIF21BO75037 1637 aa20.21■□□□□ 0.83
PRAME-203ENST00000402697 CEP164Q9UPV0 1460 aa20.18■□□□□ 0.82
PRAME-203ENST00000402697 NESP48681 1621 aa20.09■□□□□ 0.81
PRAME-203ENST00000402697 LAMC3Q9Y6N6 1575 aa20.09■□□□□ 0.81
PRAME-203ENST00000402697 FANCD2Q9BXW9 1451 aa20.07■□□□□ 0.8
PRAME-203ENST00000402697 UBTFP17480 764 aaKnown RBP20.07■□□□□ 0.8
PRAME-203ENST00000402697 DNAJC5BQ9UF47 199 aa20.05■□□□□ 0.8
PRAME-203ENST00000402697 DNMBPQ6XZF7 1577 aa19.96■□□□□ 0.79
PRAME-203ENST00000402697 ERICH3Q5RHP9 1530 aa19.95■□□□□ 0.78
PRAME-203ENST00000402697 FGD5Q6ZNL6 1462 aa19.94■□□□□ 0.78
PRAME-203ENST00000402697 CLIP1P30622 1438 aa19.92■□□□□ 0.78
PRAME-203ENST00000402697 KIF21AQ7Z4S6 1674 aa19.91■□□□□ 0.78
PRAME-203ENST00000402697 TOPBP1Q92547 1522 aa19.9■□□□□ 0.78
PRAME-203ENST00000402697 KIF27Q86VH2 1401 aa19.89■□□□□ 0.77
PRAME-203ENST00000402697 VPS8Q8N3P4 1428 aa19.89■□□□□ 0.77
PRAME-203ENST00000402697 RAPGEF2Q9Y4G8 1499 aa19.88■□□□□ 0.77
PRAME-203ENST00000402697 PRXQ9BXM0 1461 aa19.85■□□□□ 0.77
PRAME-203ENST00000402697 PDS5BQ9NTI5 1447 aa19.85■□□□□ 0.77
PRAME-203ENST00000402697 URB2Q14146 1524 aaKnown RBP19.85■□□□□ 0.77
PRAME-203ENST00000402697 CCER1Q8TC90 406 aaPredicted RBP19.83■□□□□ 0.77
PRAME-203ENST00000402697 CUX2O14529 1486 aa19.82■□□□□ 0.76
PRAME-203ENST00000402697 POLA1P09884 1462 aaPredicted RBP19.82■□□□□ 0.76
PRAME-203ENST00000402697 WDR97A6NE52 1622 aa19.78■□□□□ 0.76
PRAME-203ENST00000402697 ABCA10Q8WWZ4 1543 aa19.76■□□□□ 0.75
PRAME-203ENST00000402697 RAD54L2Q9Y4B4 1467 aa19.75■□□□□ 0.75
PRAME-203ENST00000402697 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.74■□□□□ 0.75
PRAME-203ENST00000402697 APLP2Q06481 763 aa19.74■□□□□ 0.75
PRAME-203ENST00000402697 IGF1RP08069 1367 aa19.7■□□□□ 0.74
PRAME-203ENST00000402697 ABCA5Q8WWZ7 1642 aa19.64■□□□□ 0.73
PRAME-203ENST00000402697 MRC2Q9UBG0 1479 aa19.64■□□□□ 0.73
PRAME-203ENST00000402697 TARBP1Q13395 1621 aaKnown RBP19.63■□□□□ 0.73
PRAME-203ENST00000402697 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
PRAME-203ENST00000402697 CUL7Q14999 1698 aa19.6■□□□□ 0.73
PRAME-203ENST00000402697 RANGAP1P46060 587 aaPredicted RBP19.6■□□□□ 0.73
PRAME-203ENST00000402697 CARMIL1Q5VZK9 1371 aa19.59■□□□□ 0.73
PRAME-203ENST00000402697 WDR62O43379 1518 aa19.57■□□□□ 0.72
PRAME-203ENST00000402697 TTBK1Q5TCY1 1321 aaPredicted RBP19.57■□□□□ 0.72
PRAME-203ENST00000402697 GAPVD1Q14C86 1478 aa19.51■□□□□ 0.71
PRAME-203ENST00000402697 THOC2Q8NI27 1593 aaKnown RBP19.5■□□□□ 0.71
PRAME-203ENST00000402697 TDRD9Q8NDG6 1382 aaKnown RBP19.5■□□□□ 0.71
PRAME-203ENST00000402697 MAP3K1Q13233 1512 aa19.5■□□□□ 0.71
PRAME-203ENST00000402697 CLSPNQ9HAW4 1339 aa19.49■□□□□ 0.71
PRAME-203ENST00000402697 PBRM1Q86U86 1689 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms