RNA–Protein interactions for RNA: ENST00000492657.5

PRAME-213, Transcript of preferentially expressed antigen in melanoma, humanhuman

TSL 1 (best)

Gene PRAME, Length 2,831 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-213ENST00000492657 NISCHQ9Y2I1 1504 aa27.27■■□□□ 1.96
PRAME-213ENST00000492657 CCDC180Q9P1Z9 1646 aa23.23■■□□□ 1.31
PRAME-213ENST00000492657 SHROOM4Q9ULL8 1493 aa23.18■■□□□ 1.3
PRAME-213ENST00000492657 ZCCHC6Q5VYS8 1495 aaKnown RBP23■■□□□ 1.27
PRAME-213ENST00000492657 DCAF8L2P0C7V8 631 aa22.8■■□□□ 1.24
PRAME-213ENST00000492657 SUPT5HO00267 1087 aaKnown RBP22.62■■□□□ 1.21
PRAME-213ENST00000492657 DCAF1Q9Y4B6 1507 aa22.32■■□□□ 1.16
PRAME-213ENST00000492657 CHIC1Q5VXU3 224 aa21.85■■□□□ 1.09
PRAME-213ENST00000492657 ABCC9O60706 1549 aa21.84■■□□□ 1.09
PRAME-213ENST00000492657 SCRIBQ14160 1630 aa21.82■■□□□ 1.08
PRAME-213ENST00000492657 MYO15BQ96JP2 1530 aa21.74■■□□□ 1.07
PRAME-213ENST00000492657 NACADO15069 1562 aa21.56■■□□□ 1.04
PRAME-213ENST00000492657 RSF1Q96T23 1441 aaPredicted RBP21.52■■□□□ 1.03
PRAME-213ENST00000492657 CECR2Q9BXF3 1484 aa21.35■■□□□ 1.01
PRAME-213ENST00000492657 RB1CC1Q8TDY2 1594 aa21.26■□□□□ 0.99
PRAME-213ENST00000492657 LOC105371045A0A1W2PR82 267 aa21.25■□□□□ 0.99
PRAME-213ENST00000492657 MROH2BQ7Z745 1585 aa21.22■□□□□ 0.99
PRAME-213ENST00000492657 WIZO95785 1651 aa21.09■□□□□ 0.97
PRAME-213ENST00000492657 TRIM41Q8WV44 630 aa21.05■□□□□ 0.96
PRAME-213ENST00000492657 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
PRAME-213ENST00000492657 PCGF6Q9BYE7 350 aa20.94■□□□□ 0.94
PRAME-213ENST00000492657 FAM9AQ8IZU1 332 aaPredicted RBP20.93■□□□□ 0.94
PRAME-213ENST00000492657 BAZ1AQ9NRL2 1556 aaPredicted RBP20.93■□□□□ 0.94
PRAME-213ENST00000492657 PABPN1Q86U42 306 aaKnown RBP eCLIP20.89■□□□□ 0.94
PRAME-213ENST00000492657 SMARCA4P51532 1647 aa20.81■□□□□ 0.92
PRAME-213ENST00000492657 EHMT2Q96KQ7 1210 aa20.8■□□□□ 0.92
PRAME-213ENST00000492657 HRCP23327 699 aa20.74■□□□□ 0.91
PRAME-213ENST00000492657 BICRAQ9NZM4 1560 aa20.74■□□□□ 0.91
PRAME-213ENST00000492657 PPARGC1BQ86YN6 1023 aaKnown RBP20.73■□□□□ 0.91
PRAME-213ENST00000492657 TOP2AP11388 1531 aaKnown RBP20.71■□□□□ 0.91
PRAME-213ENST00000492657 CCDC88BA6NC98 1476 aa20.67■□□□□ 0.9
PRAME-213ENST00000492657 EIF4G1Q04637 1599 aaKnown RBP20.65■□□□□ 0.9
PRAME-213ENST00000492657 SMARCA2P51531 1590 aa20.62■□□□□ 0.89
PRAME-213ENST00000492657 ABCC8Q09428 1581 aa20.55■□□□□ 0.88
PRAME-213ENST00000492657 TRIM26Q12899 539 aaPredicted RBP20.54■□□□□ 0.88
PRAME-213ENST00000492657 PEG3Q9GZU2 1588 aa20.38■□□□□ 0.85
PRAME-213ENST00000492657 ATAD2BQ9ULI0 1458 aa20.36■□□□□ 0.85
PRAME-213ENST00000492657 SOGA1O94964 1423 aa20.32■□□□□ 0.84
PRAME-213ENST00000492657 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
PRAME-213ENST00000492657 RUSC2Q8N2Y8 1516 aa20.26■□□□□ 0.83
PRAME-213ENST00000492657 WRNQ14191 1432 aaPredicted RBP eCLIP20.2■□□□□ 0.82
PRAME-213ENST00000492657 CSRNP3Q8WYN3 585 aa20.18■□□□□ 0.82
PRAME-213ENST00000492657 SYNJ1O43426 1573 aa20.12■□□□□ 0.81
PRAME-213ENST00000492657 UBTFP17480 764 aaKnown RBP20.1■□□□□ 0.81
PRAME-213ENST00000492657 EEA1Q15075 1411 aa20.08■□□□□ 0.8
PRAME-213ENST00000492657 CEP162Q5TB80 1403 aa20.08■□□□□ 0.8
PRAME-213ENST00000492657 TNIKQ9UKE5 1360 aa20.05■□□□□ 0.8
PRAME-213ENST00000492657 TTBK1Q5TCY1 1321 aaPredicted RBP20.04■□□□□ 0.8
PRAME-213ENST00000492657 NCAPD3P42695 1498 aa19.98■□□□□ 0.79
PRAME-213ENST00000492657 GOLGA3Q08378 1498 aa19.97■□□□□ 0.79
PRAME-213ENST00000492657 ZEB1P37275 1124 aaPredicted RBP19.93■□□□□ 0.78
PRAME-213ENST00000492657 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
PRAME-213ENST00000492657 CEP164Q9UPV0 1460 aa19.87■□□□□ 0.77
PRAME-213ENST00000492657 TOP2BQ02880 1626 aa19.86■□□□□ 0.77
PRAME-213ENST00000492657 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.85■□□□□ 0.77
PRAME-213ENST00000492657 KIF21BO75037 1637 aa19.83■□□□□ 0.76
PRAME-213ENST00000492657 RANGAP1P46060 587 aaPredicted RBP19.83■□□□□ 0.76
PRAME-213ENST00000492657 RAPGEF2Q9Y4G8 1499 aa19.82■□□□□ 0.76
PRAME-213ENST00000492657 BIVM-ERCC5R4GMW8 1640 aa19.78■□□□□ 0.76
PRAME-213ENST00000492657 CLIP1P30622 1438 aa19.76■□□□□ 0.75
PRAME-213ENST00000492657 CUX1P39880 1505 aa19.76■□□□□ 0.75
PRAME-213ENST00000492657 CFTRP13569 1480 aa19.76■□□□□ 0.75
PRAME-213ENST00000492657 SCAF1Q9H7N4 1312 aaKnown RBP19.73■□□□□ 0.75
PRAME-213ENST00000492657 CCER1Q8TC90 406 aaPredicted RBP19.73■□□□□ 0.75
PRAME-213ENST00000492657 CC2D2AQ9P2K1 1620 aa19.63■□□□□ 0.73
PRAME-213ENST00000492657 PRXQ9BXM0 1461 aa19.62■□□□□ 0.73
PRAME-213ENST00000492657 VPS8Q8N3P4 1428 aa19.62■□□□□ 0.73
PRAME-213ENST00000492657 CADPSQ9ULU8 1353 aa19.61■□□□□ 0.73
PRAME-213ENST00000492657 KIF27Q86VH2 1401 aa19.59■□□□□ 0.73
PRAME-213ENST00000492657 APLP2Q06481 763 aa19.55■□□□□ 0.72
PRAME-213ENST00000492657 ERICH3Q5RHP9 1530 aa19.55■□□□□ 0.72
PRAME-213ENST00000492657 HNRNPUL2Q1KMD3 747 aaKnown RBP19.53■□□□□ 0.72
PRAME-213ENST00000492657 PRDM2Q13029 1718 aa19.53■□□□□ 0.72
PRAME-213ENST00000492657 PELP1Q8IZL8 1130 aaKnown RBP19.51■□□□□ 0.71
PRAME-213ENST00000492657 CUX2O14529 1486 aa19.48■□□□□ 0.71
PRAME-213ENST00000492657 ARAP1Q96P48 1450 aa19.47■□□□□ 0.71
PRAME-213ENST00000492657 FGD5Q6ZNL6 1462 aa19.44■□□□□ 0.7
PRAME-213ENST00000492657 IGF1RP08069 1367 aa19.44■□□□□ 0.7
PRAME-213ENST00000492657 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
PRAME-213ENST00000492657 NESP48681 1621 aa19.41■□□□□ 0.7
PRAME-213ENST00000492657 KANK4Q5T7N3 995 aaPredicted RBP19.4■□□□□ 0.7
PRAME-213ENST00000492657 DNAJC5BQ9UF47 199 aa19.35■□□□□ 0.69
PRAME-213ENST00000492657 CARMIL1Q5VZK9 1371 aa19.35■□□□□ 0.69
PRAME-213ENST00000492657 ARHGAP35Q9NRY4 1499 aa19.35■□□□□ 0.69
PRAME-213ENST00000492657 RAD54L2Q9Y4B4 1467 aa19.32■□□□□ 0.68
PRAME-213ENST00000492657 TOPBP1Q92547 1522 aa19.26■□□□□ 0.67
PRAME-213ENST00000492657 NEUROD1Q13562 356 aa19.25■□□□□ 0.67
PRAME-213ENST00000492657 DNMBPQ6XZF7 1577 aa19.25■□□□□ 0.67
PRAME-213ENST00000492657 POLA1P09884 1462 aaPredicted RBP19.24■□□□□ 0.67
PRAME-213ENST00000492657 P3H3Q8IVL6 736 aa19.22■□□□□ 0.67
PRAME-213ENST00000492657 DIEXFQ68CQ4 756 aaKnown RBP19.19■□□□□ 0.66
PRAME-213ENST00000492657 ABCA10Q8WWZ4 1543 aa19.18■□□□□ 0.66
PRAME-213ENST00000492657 URB2Q14146 1524 aaKnown RBP19.16■□□□□ 0.66
PRAME-213ENST00000492657 ACIN1Q9UKV3 1341 aaKnown RBP19.14■□□□□ 0.65
PRAME-213ENST00000492657 GTF3C3Q9Y5Q9 886 aa19.13■□□□□ 0.65
PRAME-213ENST00000492657 LAMC3Q9Y6N6 1575 aa19.13■□□□□ 0.65
PRAME-213ENST00000492657 ITGAEP38570 1179 aa19.13■□□□□ 0.65
PRAME-213ENST00000492657 ZNF316A6NFI3 1004 aaPredicted RBP19.12■□□□□ 0.65
PRAME-213ENST00000492657 RRBP1Q9P2E9 1410 aaKnown RBP19.12■□□□□ 0.65
PRAME-213ENST00000492657 ATP1B4Q9UN42 357 aaPredicted RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms