RNA–Protein interactions for RNA: ENST00000398743.6

PRAME-202, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-202ENST00000398743 NISCHQ9Y2I1 1504 aa29.58■■■□□ 2.33
PRAME-202ENST00000398743 CCDC180Q9P1Z9 1646 aa25.38■■□□□ 1.65
PRAME-202ENST00000398743 ZCCHC6Q5VYS8 1495 aaKnown RBP24.99■■□□□ 1.59
PRAME-202ENST00000398743 SHROOM4Q9ULL8 1493 aa24.79■■□□□ 1.56
PRAME-202ENST00000398743 DCAF1Q9Y4B6 1507 aa24.39■■□□□ 1.49
PRAME-202ENST00000398743 DCAF8L2P0C7V8 631 aa24.39■■□□□ 1.49
PRAME-202ENST00000398743 SUPT5HO00267 1087 aaKnown RBP24.19■■□□□ 1.46
PRAME-202ENST00000398743 MYO15BQ96JP2 1530 aa23.82■■□□□ 1.4
PRAME-202ENST00000398743 SCRIBQ14160 1630 aa23.59■■□□□ 1.37
PRAME-202ENST00000398743 ABCC9O60706 1549 aa23.55■■□□□ 1.36
PRAME-202ENST00000398743 NACADO15069 1562 aa23.51■■□□□ 1.35
PRAME-202ENST00000398743 CHIC1Q5VXU3 224 aa23.45■■□□□ 1.35
PRAME-202ENST00000398743 RSF1Q96T23 1441 aaPredicted RBP23.26■■□□□ 1.31
PRAME-202ENST00000398743 RB1CC1Q8TDY2 1594 aa23.17■■□□□ 1.3
PRAME-202ENST00000398743 CECR2Q9BXF3 1484 aa23■■□□□ 1.27
PRAME-202ENST00000398743 MROH2BQ7Z745 1585 aa22.92■■□□□ 1.26
PRAME-202ENST00000398743 BAZ1AQ9NRL2 1556 aaPredicted RBP22.78■■□□□ 1.24
PRAME-202ENST00000398743 WIZO95785 1651 aa22.77■■□□□ 1.24
PRAME-202ENST00000398743 UNC13AQ9UPW8 1703 aa22.72■■□□□ 1.23
PRAME-202ENST00000398743 LOC105371045A0A1W2PR82 267 aa22.65■■□□□ 1.22
PRAME-202ENST00000398743 TRIM41Q8WV44 630 aa22.65■■□□□ 1.22
PRAME-202ENST00000398743 SMARCA4P51532 1647 aa22.59■■□□□ 1.21
PRAME-202ENST00000398743 TOP2AP11388 1531 aaKnown RBP22.51■■□□□ 1.19
PRAME-202ENST00000398743 BICRAQ9NZM4 1560 aa22.48■■□□□ 1.19
PRAME-202ENST00000398743 EIF4G1Q04637 1599 aaKnown RBP22.42■■□□□ 1.18
PRAME-202ENST00000398743 PABPN1Q86U42 306 aaKnown RBP eCLIP22.4■■□□□ 1.18
PRAME-202ENST00000398743 PCGF6Q9BYE7 350 aa22.37■■□□□ 1.17
PRAME-202ENST00000398743 SMARCA2P51531 1590 aa22.34■■□□□ 1.17
PRAME-202ENST00000398743 CCDC88BA6NC98 1476 aa22.34■■□□□ 1.17
PRAME-202ENST00000398743 FAM9AQ8IZU1 332 aaPredicted RBP22.32■■□□□ 1.16
PRAME-202ENST00000398743 PEG3Q9GZU2 1588 aa22.24■■□□□ 1.15
PRAME-202ENST00000398743 HRCP23327 699 aa22.24■■□□□ 1.15
PRAME-202ENST00000398743 ABCC8Q09428 1581 aa22.13■■□□□ 1.13
PRAME-202ENST00000398743 TRIM26Q12899 539 aaPredicted RBP22.12■■□□□ 1.13
PRAME-202ENST00000398743 ATAD2BQ9ULI0 1458 aa22.07■■□□□ 1.12
PRAME-202ENST00000398743 EHMT2Q96KQ7 1210 aa22.05■■□□□ 1.12
PRAME-202ENST00000398743 BAZ1BQ9UIG0 1483 aaKnown RBP22■■□□□ 1.11
PRAME-202ENST00000398743 WRNQ14191 1432 aaPredicted RBP eCLIP21.88■■□□□ 1.09
PRAME-202ENST00000398743 EEA1Q15075 1411 aa21.88■■□□□ 1.09
PRAME-202ENST00000398743 SOGA1O94964 1423 aa21.87■■□□□ 1.09
PRAME-202ENST00000398743 CSRNP3Q8WYN3 585 aa21.75■■□□□ 1.07
PRAME-202ENST00000398743 SYNJ1O43426 1573 aa21.75■■□□□ 1.07
PRAME-202ENST00000398743 HMGXB3Q12766 1538 aa21.74■■□□□ 1.07
PRAME-202ENST00000398743 RUSC2Q8N2Y8 1516 aa21.74■■□□□ 1.07
PRAME-202ENST00000398743 NCAPD3P42695 1498 aa21.73■■□□□ 1.07
PRAME-202ENST00000398743 TNIKQ9UKE5 1360 aa21.71■■□□□ 1.07
PRAME-202ENST00000398743 PPARGC1BQ86YN6 1023 aaKnown RBP21.69■■□□□ 1.06
PRAME-202ENST00000398743 CEP162Q5TB80 1403 aa21.68■■□□□ 1.06
PRAME-202ENST00000398743 GOLGA3Q08378 1498 aa21.65■■□□□ 1.06
PRAME-202ENST00000398743 UBTFP17480 764 aaKnown RBP21.59■■□□□ 1.05
PRAME-202ENST00000398743 ZEB1P37275 1124 aaPredicted RBP21.57■■□□□ 1.04
PRAME-202ENST00000398743 TOP2BQ02880 1626 aa21.57■■□□□ 1.04
PRAME-202ENST00000398743 CEP164Q9UPV0 1460 aa21.57■■□□□ 1.04
PRAME-202ENST00000398743 KIF21BO75037 1637 aa21.55■■□□□ 1.04
PRAME-202ENST00000398743 BIVM-ERCC5R4GMW8 1640 aa21.51■■□□□ 1.03
PRAME-202ENST00000398743 CFTRP13569 1480 aa21.46■■□□□ 1.03
PRAME-202ENST00000398743 RAPGEF2Q9Y4G8 1499 aa21.38■■□□□ 1.01
PRAME-202ENST00000398743 CUX1P39880 1505 aa21.37■■□□□ 1.01
PRAME-202ENST00000398743 CLIP1P30622 1438 aa21.35■■□□□ 1.01
PRAME-202ENST00000398743 PRDM2Q13029 1718 aa21.3■■□□□ 1
PRAME-202ENST00000398743 TTBK1Q5TCY1 1321 aaPredicted RBP21.29■■□□□ 1
PRAME-202ENST00000398743 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
PRAME-202ENST00000398743 CC2D2AQ9P2K1 1620 aa21.27■■□□□ 1
PRAME-202ENST00000398743 PRXQ9BXM0 1461 aa21.27■■□□□ 1
PRAME-202ENST00000398743 CADPSQ9ULU8 1353 aa21.26■□□□□ 0.99
PRAME-202ENST00000398743 KIF27Q86VH2 1401 aa21.25■□□□□ 0.99
PRAME-202ENST00000398743 VPS8Q8N3P4 1428 aa21.25■□□□□ 0.99
PRAME-202ENST00000398743 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.2■□□□□ 0.98
PRAME-202ENST00000398743 CCER1Q8TC90 406 aaPredicted RBP21.18■□□□□ 0.98
PRAME-202ENST00000398743 RANGAP1P46060 587 aaPredicted RBP21.12■□□□□ 0.97
PRAME-202ENST00000398743 APLP2Q06481 763 aa21.1■□□□□ 0.97
PRAME-202ENST00000398743 CUX2O14529 1486 aa21.06■□□□□ 0.96
PRAME-202ENST00000398743 FGD5Q6ZNL6 1462 aa21.05■□□□□ 0.96
PRAME-202ENST00000398743 ARAP1Q96P48 1450 aa21.04■□□□□ 0.96
PRAME-202ENST00000398743 FANCD2Q9BXW9 1451 aa21.04■□□□□ 0.96
PRAME-202ENST00000398743 IGF1RP08069 1367 aa20.99■□□□□ 0.95
PRAME-202ENST00000398743 DNMBPQ6XZF7 1577 aa20.94■□□□□ 0.94
PRAME-202ENST00000398743 ARHGAP35Q9NRY4 1499 aa20.91■□□□□ 0.94
PRAME-202ENST00000398743 CARMIL1Q5VZK9 1371 aa20.91■□□□□ 0.94
PRAME-202ENST00000398743 NESP48681 1621 aa20.9■□□□□ 0.94
PRAME-202ENST00000398743 HNRNPUL2Q1KMD3 747 aaKnown RBP20.89■□□□□ 0.93
PRAME-202ENST00000398743 TOPBP1Q92547 1522 aa20.87■□□□□ 0.93
PRAME-202ENST00000398743 LAMC3Q9Y6N6 1575 aa20.87■□□□□ 0.93
PRAME-202ENST00000398743 POLA1P09884 1462 aaPredicted RBP20.85■□□□□ 0.93
PRAME-202ENST00000398743 ABCA10Q8WWZ4 1543 aa20.84■□□□□ 0.93
PRAME-202ENST00000398743 RAD54L2Q9Y4B4 1467 aa20.82■□□□□ 0.92
PRAME-202ENST00000398743 KANK4Q5T7N3 995 aaPredicted RBP20.8■□□□□ 0.92
PRAME-202ENST00000398743 URB2Q14146 1524 aaKnown RBP20.73■□□□□ 0.91
PRAME-202ENST00000398743 PDS5BQ9NTI5 1447 aa20.72■□□□□ 0.91
PRAME-202ENST00000398743 RRBP1Q9P2E9 1410 aaKnown RBP20.72■□□□□ 0.91
PRAME-202ENST00000398743 CUL7Q14999 1698 aa20.71■□□□□ 0.91
PRAME-202ENST00000398743 MAP3K1Q13233 1512 aa20.69■□□□□ 0.9
PRAME-202ENST00000398743 WDR97A6NE52 1622 aa20.67■□□□□ 0.9
PRAME-202ENST00000398743 FHAD1B1AJZ9 1412 aa20.67■□□□□ 0.9
PRAME-202ENST00000398743 TIAM1Q13009 1591 aa20.66■□□□□ 0.9
PRAME-202ENST00000398743 CCNB3Q8WWL7 1395 aa20.63■□□□□ 0.89
PRAME-202ENST00000398743 DNAJC5BQ9UF47 199 aa20.63■□□□□ 0.89
PRAME-202ENST00000398743 EFCAB5A4FU69 1503 aa20.61■□□□□ 0.89
PRAME-202ENST00000398743 ABCA5Q8WWZ7 1642 aa20.61■□□□□ 0.89
PRAME-202ENST00000398743 DIEXFQ68CQ4 756 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms