RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 NISCHQ9Y2I1 1504 aa56.15■■■■■ 6.58
CBX3-204ENST00000456948 CCDC180Q9P1Z9 1646 aa49.99■■■■■ 5.59
CBX3-204ENST00000456948 ABCC9O60706 1549 aa49.38■■■■■ 5.5
CBX3-204ENST00000456948 RB1CC1Q8TDY2 1594 aa47.21■■■■■ 5.15
CBX3-204ENST00000456948 DCAF8L2P0C7V8 631 aa47.21■■■■■ 5.15
CBX3-204ENST00000456948 NACADO15069 1562 aa47.11■■■■■ 5.13
CBX3-204ENST00000456948 MYO15BQ96JP2 1530 aa46.76■■■■■ 5.08
CBX3-204ENST00000456948 ZCCHC6Q5VYS8 1495 aaKnown RBP46.69■■■■■ 5.06
CBX3-204ENST00000456948 DCAF1Q9Y4B6 1507 aa46.48■■■■■ 5.03
CBX3-204ENST00000456948 PABPN1Q86U42 306 aaKnown RBP eCLIP46.11■■■■■ 4.97
CBX3-204ENST00000456948 UNC13AQ9UPW8 1703 aa46.1■■■■■ 4.97
CBX3-204ENST00000456948 DNAJC5BQ9UF47 199 aa45.86■■■■■ 4.93
CBX3-204ENST00000456948 BICRAQ9NZM4 1560 aa45.72■■■■■ 4.91
CBX3-204ENST00000456948 SCRIBQ14160 1630 aa45.56■■■■■ 4.88
CBX3-204ENST00000456948 SHROOM4Q9ULL8 1493 aa45.3■■■■■ 4.84
CBX3-204ENST00000456948 EIF4G1Q04637 1599 aaKnown RBP44.6■■■■■ 4.73
CBX3-204ENST00000456948 CC2D2AQ9P2K1 1620 aa44.59■■■■■ 4.73
CBX3-204ENST00000456948 CECR2Q9BXF3 1484 aa44.4■■■■■ 4.7
CBX3-204ENST00000456948 BAZ1AQ9NRL2 1556 aaPredicted RBP43.58■■■■■ 4.57
CBX3-204ENST00000456948 SMARCA4P51532 1647 aa43.58■■■■■ 4.57
CBX3-204ENST00000456948 NCAPD3P42695 1498 aa43.46■■■■■ 4.55
CBX3-204ENST00000456948 SMARCA2P51531 1590 aa43.42■■■■■ 4.54
CBX3-204ENST00000456948 ATAD2BQ9ULI0 1458 aa43.42■■■■■ 4.54
CBX3-204ENST00000456948 MROH2BQ7Z745 1585 aa43.2■■■■■ 4.51
CBX3-204ENST00000456948 HMGXB3Q12766 1538 aa43.19■■■■■ 4.5
CBX3-204ENST00000456948 PEG3Q9GZU2 1588 aa43.15■■■■■ 4.5
CBX3-204ENST00000456948 BAZ1BQ9UIG0 1483 aaKnown RBP43.11■■■■■ 4.49
CBX3-204ENST00000456948 WIZO95785 1651 aa42.73■■■■■ 4.43
CBX3-204ENST00000456948 RSF1Q96T23 1441 aaPredicted RBP42.71■■■■■ 4.43
CBX3-204ENST00000456948 ERCC6Q03468 1493 aa42.63■■■■■ 4.42
CBX3-204ENST00000456948 NESP48681 1621 aa42.54■■■■■ 4.4
CBX3-204ENST00000456948 LAMC3Q9Y6N6 1575 aa42.35■■■■■ 4.37
CBX3-204ENST00000456948 TOP2AP11388 1531 aaKnown RBP42.32■■■■■ 4.37
CBX3-204ENST00000456948 CUX2O14529 1486 aa42.28■■■■■ 4.36
CBX3-204ENST00000456948 CADPSQ9ULU8 1353 aa42.22■■■■■ 4.35
CBX3-204ENST00000456948 PDS5BQ9NTI5 1447 aa42.16■■■■■ 4.34
CBX3-204ENST00000456948 KIF21AQ7Z4S6 1674 aa42■■■■■ 4.31
CBX3-204ENST00000456948 THOC2Q8NI27 1593 aaKnown RBP41.94■■■■■ 4.3
CBX3-204ENST00000456948 CFTRP13569 1480 aa41.87■■■■■ 4.29
CBX3-204ENST00000456948 CCDC88BA6NC98 1476 aa41.84■■■■■ 4.29
CBX3-204ENST00000456948 DNAJC5Q9H3Z4 198 aa41.74■■■■■ 4.27
CBX3-204ENST00000456948 FANCD2Q9BXW9 1451 aa41.7■■■■■ 4.27
CBX3-204ENST00000456948 CEP164Q9UPV0 1460 aa41.68■■■■■ 4.26
CBX3-204ENST00000456948 MRC2Q9UBG0 1479 aa41.65■■■■■ 4.26
CBX3-204ENST00000456948 SUPT5HO00267 1087 aaKnown RBP41.64■■■■■ 4.26
CBX3-204ENST00000456948 PRDM2Q13029 1718 aa41.5■■■■■ 4.23
CBX3-204ENST00000456948 WDR62O43379 1518 aa41.49■■■■■ 4.23
CBX3-204ENST00000456948 URB2Q14146 1524 aaKnown RBP41.2■■■■■ 4.19
CBX3-204ENST00000456948 ABCC8Q09428 1581 aa41.12■■■■■ 4.17
CBX3-204ENST00000456948 TOPBP1Q92547 1522 aa40.98■■■■■ 4.15
CBX3-204ENST00000456948 DNMBPQ6XZF7 1577 aa40.92■■■■■ 4.14
CBX3-204ENST00000456948 IFT140Q96RY7 1462 aa40.83■■■■■ 4.13
CBX3-204ENST00000456948 ZNF608Q9ULD9 1512 aaPredicted RBP40.63■■■■■ 4.1
CBX3-204ENST00000456948 POLA1P09884 1462 aaPredicted RBP40.6■■■■■ 4.09
CBX3-204ENST00000456948 CUX1P39880 1505 aa40.55■■■■■ 4.08
CBX3-204ENST00000456948 SOGA1O94964 1423 aa40.54■■■■■ 4.08
CBX3-204ENST00000456948 OSCARQ8IYS5 282 aa40.54■■■■■ 4.08
CBX3-204ENST00000456948 FGD5Q6ZNL6 1462 aa40.5■■■■■ 4.07
CBX3-204ENST00000456948 TARBP1Q13395 1621 aaKnown RBP40.49■■■■■ 4.07
CBX3-204ENST00000456948 RAD54L2Q9Y4B4 1467 aa40.42■■■■■ 4.06
CBX3-204ENST00000456948 EIF4G3O43432 1585 aaKnown RBP40.42■■■■■ 4.06
CBX3-204ENST00000456948 AQRO60306 1485 aaKnown RBP eCLIP40.36■■■■■ 4.052e-9■■■□□ 17
CBX3-204ENST00000456948 WRNQ14191 1432 aaPredicted RBP eCLIP40.34■■■■■ 4.05
CBX3-204ENST00000456948 WDR97A6NE52 1622 aa40.28■■■■■ 4.04
CBX3-204ENST00000456948 TDRD9Q8NDG6 1382 aaKnown RBP40.28■■■■■ 4.04
CBX3-204ENST00000456948 TRIM41Q8WV44 630 aa40.26■■■■■ 4.04
CBX3-204ENST00000456948 TOP2BQ02880 1626 aa40.2■■■■■ 4.03
CBX3-204ENST00000456948 BIVM-ERCC5R4GMW8 1640 aa40.16■■■■■ 4.02
CBX3-204ENST00000456948 FBLN2P98095 1184 aa40.12■■■■■ 4.01
CBX3-204ENST00000456948 ABCA10Q8WWZ4 1543 aa40.11■■■■■ 4.01
CBX3-204ENST00000456948 SYNJ1O43426 1573 aa40.11■■■■■ 4.01
CBX3-204ENST00000456948 GRIN2BQ13224 1484 aa40.07■■■■■ 4
CBX3-204ENST00000456948 CHD1O14646 1710 aa40.06■■■■■ 4
CBX3-204ENST00000456948 GAPVD1Q14C86 1478 aa40.04■■■■■ 4
CBX3-204ENST00000456948 MAGI1Q96QZ7 1491 aaPredicted RBP39.98■■■■□ 3.99
CBX3-204ENST00000456948 SNAPC4Q5SXM2 1469 aa39.97■■■■□ 3.99
CBX3-204ENST00000456948 CHMP7Q8WUX9 453 aaPredicted RBP39.95■■■■□ 3.99
CBX3-204ENST00000456948 RIMBP3CA6NJZ7 1639 aa39.9■■■■□ 3.98
CBX3-204ENST00000456948 RIMBP3BA6NNM3 1639 aa39.9■■■■□ 3.98
CBX3-204ENST00000456948 RIMBP3Q9UFD9 1639 aa39.9■■■■□ 3.98
CBX3-204ENST00000456948 ABCA5Q8WWZ7 1642 aa39.89■■■■□ 3.98
CBX3-204ENST00000456948 PBRM1Q86U86 1689 aa39.86■■■■□ 3.97
CBX3-204ENST00000456948 SYNJ2O15056 1496 aa39.81■■■■□ 3.96
CBX3-204ENST00000456948 ARHGEF11O15085 1522 aa39.81■■■■□ 3.96
CBX3-204ENST00000456948 ERICH3Q5RHP9 1530 aa39.65■■■■□ 3.94
CBX3-204ENST00000456948 CYB5RLQ6IPT4 315 aa39.6■■■■□ 3.93
CBX3-204ENST00000456948 FHAD1B1AJZ9 1412 aa39.58■■■■□ 3.93
CBX3-204ENST00000456948 KIF27Q86VH2 1401 aa39.58■■■■□ 3.93
CBX3-204ENST00000456948 CLASP1Q7Z460 1538 aa39.54■■■■□ 3.92
CBX3-204ENST00000456948 ADAMTS12P58397 1594 aa39.54■■■■□ 3.92
CBX3-204ENST00000456948 GRIN2AQ12879 1464 aa39.51■■■■□ 3.92
CBX3-204ENST00000456948 ARAP1Q96P48 1450 aa39.44■■■■□ 3.9
CBX3-204ENST00000456948 IGF1RP08069 1367 aa39.36■■■■□ 3.89
CBX3-204ENST00000456948 NUP160Q12769 1436 aa39.31■■■■□ 3.88
CBX3-204ENST00000456948 CUL7Q14999 1698 aa39.26■■■■□ 3.88
CBX3-204ENST00000456948 CEP170Q5SW79 1584 aa39.24■■■■□ 3.87
CBX3-204ENST00000456948 CARMIL1Q5VZK9 1371 aa39.18■■■■□ 3.86
CBX3-204ENST00000456948 TRHP20396 242 aaPredicted RBP39.05■■■■□ 3.84
CBX3-204ENST00000456948 JPH4Q96JJ6 628 aa39.05■■■■□ 3.84
CBX3-204ENST00000456948 ERCC6L2Q5T890 1561 aa39.02■■■■□ 3.84
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms