RNA–Protein interactions for RNA: ENST00000491339.1

GABRE-211, Transcript of gamma-aminobutyric acid type A receptor epsilon subunit, humanhuman

TSL 2

Gene GABRE, Length 2,072 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRE-211ENST00000491339 NISCHQ9Y2I1 1504 aa21.37■■□□□ 1.01
GABRE-211ENST00000491339 CCDC180Q9P1Z9 1646 aa19.22■□□□□ 0.67
GABRE-211ENST00000491339 ABCC9O60706 1549 aa18.83■□□□□ 0.6
GABRE-211ENST00000491339 POTEDQ86YR6 584 aa18.56■□□□□ 0.56
GABRE-211ENST00000491339 AEBP2Q6ZN18 517 aaPredicted RBP18.14■□□□□ 0.5
GABRE-211ENST00000491339 RB1CC1Q8TDY2 1594 aa18.13■□□□□ 0.49
GABRE-211ENST00000491339 NACADO15069 1562 aa18.04■□□□□ 0.48
GABRE-211ENST00000491339 MYO15BQ96JP2 1530 aa17.86■□□□□ 0.45
GABRE-211ENST00000491339 DCAF8L2P0C7V8 631 aa17.84■□□□□ 0.45
GABRE-211ENST00000491339 ZCCHC6Q5VYS8 1495 aaKnown RBP17.79■□□□□ 0.44
GABRE-211ENST00000491339 UNC13AQ9UPW8 1703 aa17.74■□□□□ 0.43
GABRE-211ENST00000491339 DCAF1Q9Y4B6 1507 aa17.71■□□□□ 0.43
GABRE-211ENST00000491339 BICRAQ9NZM4 1560 aa17.5■□□□□ 0.39
GABRE-211ENST00000491339 PABPN1Q86U42 306 aaKnown RBP eCLIP17.47■□□□□ 0.39
GABRE-211ENST00000491339 SCRIBQ14160 1630 aa17.45■□□□□ 0.38
GABRE-211ENST00000491339 SHROOM4Q9ULL8 1493 aa17.41■□□□□ 0.38
GABRE-211ENST00000491339 DNAJC5BQ9UF47 199 aa17.27■□□□□ 0.36
GABRE-211ENST00000491339 CHIC1Q5VXU3 224 aa17.19■□□□□ 0.34
GABRE-211ENST00000491339 EIF4G1Q04637 1599 aaKnown RBP17.1■□□□□ 0.33
GABRE-211ENST00000491339 CC2D2AQ9P2K1 1620 aa17.07■□□□□ 0.32
GABRE-211ENST00000491339 CECR2Q9BXF3 1484 aa16.95■□□□□ 0.3
GABRE-211ENST00000491339 SMARCA4P51532 1647 aa16.68■□□□□ 0.26
GABRE-211ENST00000491339 BAZ1AQ9NRL2 1556 aaPredicted RBP16.63■□□□□ 0.25
GABRE-211ENST00000491339 SMARCA2P51531 1590 aa16.61■□□□□ 0.25
GABRE-211ENST00000491339 NCAPD3P42695 1498 aa16.57■□□□□ 0.24
GABRE-211ENST00000491339 HMGXB3Q12766 1538 aa16.56■□□□□ 0.24
GABRE-211ENST00000491339 ATAD2BQ9ULI0 1458 aa16.56■□□□□ 0.24
GABRE-211ENST00000491339 PEG3Q9GZU2 1588 aa16.5■□□□□ 0.23
GABRE-211ENST00000491339 BAZ1BQ9UIG0 1483 aaKnown RBP16.47■□□□□ 0.23
GABRE-211ENST00000491339 MROH2BQ7Z745 1585 aa16.44■□□□□ 0.22
GABRE-211ENST00000491339 ERCC6Q03468 1493 aa16.31■□□□□ 0.2
GABRE-211ENST00000491339 WIZO95785 1651 aa16.3■□□□□ 0.2
GABRE-211ENST00000491339 LAMC3Q9Y6N6 1575 aa16.26■□□□□ 0.19
GABRE-211ENST00000491339 NESP48681 1621 aa16.22■□□□□ 0.19
GABRE-211ENST00000491339 CUX2O14529 1486 aa16.2■□□□□ 0.18
GABRE-211ENST00000491339 RSF1Q96T23 1441 aaPredicted RBP16.16■□□□□ 0.18
GABRE-211ENST00000491339 TOP2AP11388 1531 aaKnown RBP16.15■□□□□ 0.18
GABRE-211ENST00000491339 KIF21AQ7Z4S6 1674 aa16.15■□□□□ 0.18
GABRE-211ENST00000491339 THOC2Q8NI27 1593 aaKnown RBP16.12■□□□□ 0.17
GABRE-211ENST00000491339 PDS5BQ9NTI5 1447 aa16.1■□□□□ 0.17
GABRE-211ENST00000491339 SENP3Q9H4L4 574 aaPredicted RBP16.09■□□□□ 0.17
GABRE-211ENST00000491339 CADPSQ9ULU8 1353 aa16.07■□□□□ 0.16
GABRE-211ENST00000491339 PRDM2Q13029 1718 aa16.02■□□□□ 0.15
GABRE-211ENST00000491339 MRC2Q9UBG0 1479 aa15.97■□□□□ 0.15
GABRE-211ENST00000491339 CEP164Q9UPV0 1460 aa15.97■□□□□ 0.15
GABRE-211ENST00000491339 CFTRP13569 1480 aa15.96■□□□□ 0.14
GABRE-211ENST00000491339 WDR62O43379 1518 aa15.93■□□□□ 0.14
GABRE-211ENST00000491339 FANCD2Q9BXW9 1451 aa15.93■□□□□ 0.14
GABRE-211ENST00000491339 CCDC88BA6NC98 1476 aa15.87■□□□□ 0.13
GABRE-211ENST00000491339 URB2Q14146 1524 aaKnown RBP15.76■□□□□ 0.11
GABRE-211ENST00000491339 DNAJC5Q9H3Z4 198 aa15.76■□□□□ 0.11
GABRE-211ENST00000491339 ABCC8Q09428 1581 aa15.68■□□□□ 0.1
GABRE-211ENST00000491339 DNMBPQ6XZF7 1577 aa15.67■□□□□ 0.1
GABRE-211ENST00000491339 TOPBP1Q92547 1522 aa15.65■□□□□ 0.1
GABRE-211ENST00000491339 IFT140Q96RY7 1462 aa15.62■□□□□ 0.09
GABRE-211ENST00000491339 SUPT5HO00267 1087 aaKnown RBP15.58■□□□□ 0.09
GABRE-211ENST00000491339 EIF4G3O43432 1585 aaKnown RBP15.55■□□□□ 0.08
GABRE-211ENST00000491339 TARBP1Q13395 1621 aaKnown RBP15.51■□□□□ 0.07
GABRE-211ENST00000491339 ZNF608Q9ULD9 1512 aaPredicted RBP15.5■□□□□ 0.07
GABRE-211ENST00000491339 POLA1P09884 1462 aaPredicted RBP15.5■□□□□ 0.07
GABRE-211ENST00000491339 WDR97A6NE52 1622 aa15.47■□□□□ 0.07
GABRE-211ENST00000491339 CUX1P39880 1505 aa15.46■□□□□ 0.07
GABRE-211ENST00000491339 FGD5Q6ZNL6 1462 aa15.45■□□□□ 0.06
GABRE-211ENST00000491339 PHF23Q9BUL5 403 aaPredicted RBP15.45■□□□□ 0.06
GABRE-211ENST00000491339 CHD1O14646 1710 aa15.41■□□□□ 0.06
GABRE-211ENST00000491339 SOGA1O94964 1423 aa15.4■□□□□ 0.06
GABRE-211ENST00000491339 RAD54L2Q9Y4B4 1467 aa15.39■□□□□ 0.05
GABRE-211ENST00000491339 OSCARQ8IYS5 282 aa15.39■□□□□ 0.05
GABRE-211ENST00000491339 AQRO60306 1485 aaKnown RBP eCLIP15.38■□□□□ 0.051e-14■■■■□ 21.6
GABRE-211ENST00000491339 BIVM-ERCC5R4GMW8 1640 aa15.36■□□□□ 0.05
GABRE-211ENST00000491339 PBRM1Q86U86 1689 aa15.36■□□□□ 0.05
GABRE-211ENST00000491339 TOP2BQ02880 1626 aa15.33■□□□□ 0.04
GABRE-211ENST00000491339 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
GABRE-211ENST00000491339 SNAPC4Q5SXM2 1469 aa15.3■□□□□ 0.04
GABRE-211ENST00000491339 ABCA5Q8WWZ7 1642 aa15.3■□□□□ 0.04
GABRE-211ENST00000491339 MAGI1Q96QZ7 1491 aaPredicted RBP15.3■□□□□ 0.04
GABRE-211ENST00000491339 WRNQ14191 1432 aaPredicted RBP eCLIP15.29■□□□□ 0.04
GABRE-211ENST00000491339 ABCA10Q8WWZ4 1543 aa15.29■□□□□ 0.04
GABRE-211ENST00000491339 GRIN2BQ13224 1484 aa15.29■□□□□ 0.04
GABRE-211ENST00000491339 SYNJ1O43426 1573 aa15.29■□□□□ 0.04
GABRE-211ENST00000491339 RIMBP3CA6NJZ7 1639 aa15.27■□□□□ 0.03
GABRE-211ENST00000491339 RIMBP3BA6NNM3 1639 aa15.27■□□□□ 0.03
GABRE-211ENST00000491339 RIMBP3Q9UFD9 1639 aa15.27■□□□□ 0.03
GABRE-211ENST00000491339 GAPVD1Q14C86 1478 aa15.26■□□□□ 0.03
GABRE-211ENST00000491339 FBLN2P98095 1184 aa15.23■□□□□ 0.03
GABRE-211ENST00000491339 SYNJ2O15056 1496 aa15.22■□□□□ 0.03
GABRE-211ENST00000491339 ARHGEF11O15085 1522 aa15.22■□□□□ 0.03
GABRE-211ENST00000491339 MSH5O43196 834 aa15.22■□□□□ 0.03
GABRE-211ENST00000491339 TRIM41Q8WV44 630 aa15.21■□□□□ 0.03
GABRE-211ENST00000491339 ADAMTS12P58397 1594 aa15.18■□□□□ 0.02
GABRE-211ENST00000491339 CLASP1Q7Z460 1538 aa15.18■□□□□ 0.02
GABRE-211ENST00000491339 CHMP7Q8WUX9 453 aaPredicted RBP15.17■□□□□ 0.02
GABRE-211ENST00000491339 ERICH3Q5RHP9 1530 aa15.14■□□□□ 0.01
GABRE-211ENST00000491339 FOXD1Q16676 465 aa15.12■□□□□ 0.01
GABRE-211ENST00000491339 GRIN2AQ12879 1464 aa15.1■□□□□ 0.01
GABRE-211ENST00000491339 FHAD1B1AJZ9 1412 aa15.07■□□□□ 0
GABRE-211ENST00000491339 ARAP1Q96P48 1450 aa15.06■□□□□ 0
GABRE-211ENST00000491339 CEP170Q5SW79 1584 aa15.04■□□□□ -0
GABRE-211ENST00000491339 CUL7Q14999 1698 aa15.03■□□□□ -0
GABRE-211ENST00000491339 NUP160Q12769 1436 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms