RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-209ENST00000569243 AEBP2Q6ZN18 517 aaPredicted RBP30.23■■■□□ 2.43
UBR1-209ENST00000569243 CHIC1Q5VXU3 224 aa28.22■■■□□ 2.11
UBR1-209ENST00000569243 SENP3Q9H4L4 574 aaPredicted RBP25.86■■□□□ 1.73
UBR1-209ENST00000569243 PHF23Q9BUL5 403 aaPredicted RBP25.47■■□□□ 1.67
UBR1-209ENST00000569243 FOXD1Q16676 465 aa24.22■■□□□ 1.47
UBR1-209ENST00000569243 POTEDQ86YR6 584 aa23.5■■□□□ 1.35
UBR1-209ENST00000569243 MSH5O43196 834 aa22.87■■□□□ 1.25
UBR1-209ENST00000569243 PIAS4Q8N2W9 510 aaPredicted RBP22.49■■□□□ 1.19
UBR1-209ENST00000569243 PPP6R1Q9UPN7 881 aa22.16■■□□□ 1.14
UBR1-209ENST00000569243 PLPPR3Q6T4P5 718 aa22.1■■□□□ 1.13
UBR1-209ENST00000569243 ADRA2BP18089 450 aa22.06■■□□□ 1.12
UBR1-209ENST00000569243 MAPK8IP2Q13387 824 aaPredicted RBP20.48■□□□□ 0.87
UBR1-209ENST00000569243 DMRT2Q9Y5R5 561 aa20.4■□□□□ 0.86
UBR1-209ENST00000569243 SCAF1Q9H7N4 1312 aaKnown RBP20.11■□□□□ 0.81
UBR1-209ENST00000569243 CACNB1Q02641 598 aaPredicted RBP20.1■□□□□ 0.81
UBR1-209ENST00000569243 DCAF8L1A6NGE4 600 aa19.71■□□□□ 0.75
UBR1-209ENST00000569243 RNF39Q9H2S5 420 aa19.47■□□□□ 0.71
UBR1-209ENST00000569243 HOXD11P31277 338 aaPredicted RBP19.37■□□□□ 0.69
UBR1-209ENST00000569243 PPP4R3CPQ6ZMV5 832 aa19.31■□□□□ 0.68
UBR1-209ENST00000569243 C1QBPQ07021 282 aaKnown RBP19.13■□□□□ 0.65
UBR1-209ENST00000569243 CNKSR2Q8WXI2 1034 aa19.07■□□□□ 0.64
UBR1-209ENST00000569243 RNF216Q9NWF9 866 aaPredicted RBP19.05■□□□□ 0.64
UBR1-209ENST00000569243 DNAJC5BQ9UF47 199 aa18.76■□□□□ 0.59
UBR1-209ENST00000569243 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.53■□□□□ 0.56
UBR1-209ENST00000569243 NCBP3Q53F19 620 aaKnown RBP18.34■□□□□ 0.53
UBR1-209ENST00000569243 POTEHQ6S545 545 aa18.29■□□□□ 0.52
UBR1-209ENST00000569243 NPM3O75607 178 aaKnown RBP18.1■□□□□ 0.49
UBR1-209ENST00000569243 U3KPZ7 1027 aaPredicted RBP18.03■□□□□ 0.48
UBR1-209ENST00000569243 CAPN15O75808 1086 aa18.02■□□□□ 0.48
UBR1-209ENST00000569243 DSG3P32926 999 aa18.02■□□□□ 0.48
UBR1-209ENST00000569243 SPINK5Q9NQ38 1064 aaPredicted RBP18.01■□□□□ 0.47
UBR1-209ENST00000569243 TRHP20396 242 aaPredicted RBP17.59■□□□□ 0.41
UBR1-209ENST00000569243 ABCB7O75027 752 aa17.57■□□□□ 0.4
UBR1-209ENST00000569243 SLC4A2P04920 1241 aa17.46■□□□□ 0.39
UBR1-209ENST00000569243 ZNF219Q9P2Y4 722 aaPredicted RBP17.44■□□□□ 0.38
UBR1-209ENST00000569243 APLP2Q06481 763 aa17.42■□□□□ 0.38
UBR1-209ENST00000569243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.25■□□□□ 0.35
UBR1-209ENST00000569243 HNRNPUL2Q1KMD3 747 aaKnown RBP17.25■□□□□ 0.35
UBR1-209ENST00000569243 KCNA4P22459 653 aa17.19■□□□□ 0.34
UBR1-209ENST00000569243 RBM42Q9BTD8 480 aaKnown RBP17.19■□□□□ 0.34
UBR1-209ENST00000569243 SAMD1Q6SPF0 538 aaPredicted RBP17.13■□□□□ 0.33
UBR1-209ENST00000569243 CHRDL2Q6WN34 429 aa17.11■□□□□ 0.33
UBR1-209ENST00000569243 POLA2Q14181 598 aa16.94■□□□□ 0.3
UBR1-209ENST00000569243 SP7Q8TDD2 431 aaPredicted RBP16.82■□□□□ 0.28
UBR1-209ENST00000569243 MYCNP04198 464 aaPredicted RBP16.74■□□□□ 0.27
UBR1-209ENST00000569243 AKT1S1Q96B36 256 aa16.66■□□□□ 0.26
UBR1-209ENST00000569243 PIP4P2Q8N4L2 257 aa16.57■□□□□ 0.24
UBR1-209ENST00000569243 REM2Q8IYK8 340 aaPredicted RBP16.54■□□□□ 0.24
UBR1-209ENST00000569243 HAX1O00165 279 aa16.48■□□□□ 0.23
UBR1-209ENST00000569243 ZBTB12Q9Y330 459 aaPredicted RBP16.47■□□□□ 0.23
UBR1-209ENST00000569243 ATF5Q9Y2D1 282 aaPredicted RBP16.46■□□□□ 0.23
UBR1-209ENST00000569243 OSCARQ8IYS5 282 aa16.43■□□□□ 0.22
UBR1-209ENST00000569243 PITPNM1O00562 1244 aa16.38■□□□□ 0.21
UBR1-209ENST00000569243 FXR2P51116 673 aaKnown RBP eCLIP16.33■□□□□ 0.2
UBR1-209ENST00000569243 EVX2Q03828 476 aa16.22■□□□□ 0.19
UBR1-209ENST00000569243 FOXD4L1Q9NU39 408 aa16.21■□□□□ 0.19
UBR1-209ENST00000569243 SLC4A1APQ9BWU0 796 aaKnown RBP16.08■□□□□ 0.16
UBR1-209ENST00000569243 PRKAR2AP13861 404 aaKnown RBP15.96■□□□□ 0.15
UBR1-209ENST00000569243 SPDYE2BA6NHP3 402 aa15.92■□□□□ 0.14
UBR1-209ENST00000569243 SPDYE6P0CI01 402 aa15.92■□□□□ 0.14
UBR1-209ENST00000569243 SPDYE2Q495Y8 402 aa15.92■□□□□ 0.14
UBR1-209ENST00000569243 CLEC11AQ9Y240 323 aa15.91■□□□□ 0.14
UBR1-209ENST00000569243 C19orf67A6NJJ6 358 aa15.84■□□□□ 0.13
UBR1-209ENST00000569243 FBLN2P98095 1184 aa15.83■□□□□ 0.12
UBR1-209ENST00000569243 SPDYE1Q8NFV5 336 aaPredicted RBP15.83■□□□□ 0.12
UBR1-209ENST00000569243 GABBR2O75899 941 aa15.8■□□□□ 0.12
UBR1-209ENST00000569243 ZBTB22O15209 634 aa15.79■□□□□ 0.12
UBR1-209ENST00000569243 LHX8Q68G74 356 aa15.79■□□□□ 0.12
UBR1-209ENST00000569243 ATXN8OSP0DMR3 200 aa15.73■□□□□ 0.11
UBR1-209ENST00000569243 ZNF692Q9BU19 519 aaPredicted RBP15.68■□□□□ 0.1
UBR1-209ENST00000569243 CHADLQ6NUI6 762 aa15.67■□□□□ 0.1
UBR1-209ENST00000569243 MKRN4PQ13434 485 aaPredicted RBP15.64■□□□□ 0.09
UBR1-209ENST00000569243 SSUH2Q9Y2M2 353 aa15.63■□□□□ 0.09
UBR1-209ENST00000569243 PRR29P0C7W0 189 aa15.51■□□□□ 0.07
UBR1-209ENST00000569243 POTEIP0CG38 1075 aa15.46■□□□□ 0.07
UBR1-209ENST00000569243 PABPN1Q86U42 306 aaKnown RBP eCLIP15.43■□□□□ 0.06
UBR1-209ENST00000569243 CD44P16070 742 aaKnown RBP15.4■□□□□ 0.06
UBR1-209ENST00000569243 PLSCR2Q9NRY7 297 aa15.4■□□□□ 0.06
UBR1-209ENST00000569243 FARP1Q9Y4F1 1045 aaPredicted RBP15.32■□□□□ 0.04
UBR1-209ENST00000569243 DCBLD2Q96PD2 775 aa15.25■□□□□ 0.03
UBR1-209ENST00000569243 CLCN6P51797 869 aa15.22■□□□□ 0.03
UBR1-209ENST00000569243 ZRANB1Q9UGI0 708 aa15.1■□□□□ 0.01
UBR1-209ENST00000569243 ZNF579Q8NAF0 562 aaKnown RBP15.09■□□□□ 0.01
UBR1-209ENST00000569243 OTUD5Q96G74 571 aa15.02■□□□□ -0
UBR1-209ENST00000569243 GALR2O43603 387 aaPredicted RBP15.01□□□□□ -0.01
UBR1-209ENST00000569243 POTEB2H3BUK9 544 aa14.95□□□□□ -0.02
UBR1-209ENST00000569243 CREBZFQ9NS37 354 aa14.95□□□□□ -0.02
UBR1-209ENST00000569243 POTEMA6NI47 508 aa14.91□□□□□ -0.02
UBR1-209ENST00000569243 POTEGQ6S5H5 508 aa14.84□□□□□ -0.03
UBR1-209ENST00000569243 PHF12Q96QT6 1004 aa14.84□□□□□ -0.03
UBR1-209ENST00000569243 PAK3O75914 559 aaPredicted RBP14.81□□□□□ -0.04
UBR1-209ENST00000569243 STAG3Q9UJ98 1225 aa14.81□□□□□ -0.04
UBR1-209ENST00000569243 PELP1Q8IZL8 1130 aaKnown RBP14.78□□□□□ -0.04
UBR1-209ENST00000569243 METRNQ9UJH8 293 aa14.66□□□□□ -0.06
UBR1-209ENST00000569243 NPM1P06748 294 aaKnown RBP eCLIP14.65□□□□□ -0.06
UBR1-209ENST00000569243 POTEJP0CG39 1038 aa14.62□□□□□ -0.07
UBR1-209ENST00000569243 PCDH10Q9P2E7 1040 aa14.62□□□□□ -0.07
UBR1-209ENST00000569243 ASTLQ6HA08 431 aaPredicted RBP14.6□□□□□ -0.07
UBR1-209ENST00000569243 MS4A3Q96HJ5 214 aa14.6□□□□□ -0.07
UBR1-209ENST00000569243 MNX1P50219 401 aaPredicted RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms