RNA–Protein interactions for RNA: ENST00000564540.5

UBR1-205, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-205ENST00000564540 AEBP2Q6ZN18 517 aaPredicted RBP31.07■■■□□ 2.56
UBR1-205ENST00000564540 CHIC1Q5VXU3 224 aa29.04■■■□□ 2.24
UBR1-205ENST00000564540 SENP3Q9H4L4 574 aaPredicted RBP26.61■■□□□ 1.85
UBR1-205ENST00000564540 PHF23Q9BUL5 403 aaPredicted RBP26.16■■□□□ 1.78
UBR1-205ENST00000564540 FOXD1Q16676 465 aa24.83■■□□□ 1.57
UBR1-205ENST00000564540 POTEDQ86YR6 584 aa23.75■■□□□ 1.39
UBR1-205ENST00000564540 MSH5O43196 834 aa23.48■■□□□ 1.35
UBR1-205ENST00000564540 PIAS4Q8N2W9 510 aaPredicted RBP23.04■■□□□ 1.28
UBR1-205ENST00000564540 PLPPR3Q6T4P5 718 aa22.95■■□□□ 1.26
UBR1-205ENST00000564540 PPP6R1Q9UPN7 881 aa22.81■■□□□ 1.24
UBR1-205ENST00000564540 ADRA2BP18089 450 aa22.67■■□□□ 1.22
UBR1-205ENST00000564540 DMRT2Q9Y5R5 561 aa21.03■□□□□ 0.96
UBR1-205ENST00000564540 MAPK8IP2Q13387 824 aaPredicted RBP20.98■□□□□ 0.95
UBR1-205ENST00000564540 SCAF1Q9H7N4 1312 aaKnown RBP20.8■□□□□ 0.92
UBR1-205ENST00000564540 CACNB1Q02641 598 aaPredicted RBP20.38■□□□□ 0.85
UBR1-205ENST00000564540 HOXD11P31277 338 aaPredicted RBP20.08■□□□□ 0.81
UBR1-205ENST00000564540 DCAF8L1A6NGE4 600 aa20.04■□□□□ 0.8
UBR1-205ENST00000564540 PPP4R3CPQ6ZMV5 832 aa20.02■□□□□ 0.8
UBR1-205ENST00000564540 RNF39Q9H2S5 420 aa19.99■□□□□ 0.79
UBR1-205ENST00000564540 CNKSR2Q8WXI2 1034 aa19.79■□□□□ 0.76
UBR1-205ENST00000564540 RNF216Q9NWF9 866 aaPredicted RBP19.77■□□□□ 0.76
UBR1-205ENST00000564540 C1QBPQ07021 282 aaKnown RBP19.68■□□□□ 0.74
UBR1-205ENST00000564540 DNAJC5BQ9UF47 199 aa19.58■□□□□ 0.72
UBR1-205ENST00000564540 KCNA4P22459 653 aa19.37■□□□□ 0.69
UBR1-205ENST00000564540 NCBP3Q53F19 620 aaKnown RBP19.36■□□□□ 0.69
UBR1-205ENST00000564540 NPM3O75607 178 aaKnown RBP19.14■□□□□ 0.65
UBR1-205ENST00000564540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.03■□□□□ 0.64
UBR1-205ENST00000564540 U3KPZ7 1027 aaPredicted RBP18.61■□□□□ 0.57
UBR1-205ENST00000564540 DSG3P32926 999 aa18.52■□□□□ 0.56
UBR1-205ENST00000564540 POTEHQ6S545 545 aa18.51■□□□□ 0.55
UBR1-205ENST00000564540 SPINK5Q9NQ38 1064 aaPredicted RBP18.46■□□□□ 0.55
UBR1-205ENST00000564540 CAPN15O75808 1086 aa18.43■□□□□ 0.54
UBR1-205ENST00000564540 SLC4A1APQ9BWU0 796 aaKnown RBP18.38■□□□□ 0.53
UBR1-205ENST00000564540 SLC4A2P04920 1241 aa18.13■□□□□ 0.49
UBR1-205ENST00000564540 APLP2Q06481 763 aa18.06■□□□□ 0.48
UBR1-205ENST00000564540 ZNF219Q9P2Y4 722 aaPredicted RBP18.03■□□□□ 0.48
UBR1-205ENST00000564540 TRHP20396 242 aaPredicted RBP17.99■□□□□ 0.47
UBR1-205ENST00000564540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.94■□□□□ 0.46
UBR1-205ENST00000564540 HNRNPUL2Q1KMD3 747 aaKnown RBP17.94■□□□□ 0.46
UBR1-205ENST00000564540 ABCB7O75027 752 aa17.93■□□□□ 0.46
UBR1-205ENST00000564540 ZBTB22O15209 634 aa17.85■□□□□ 0.45
UBR1-205ENST00000564540 FOXD4L1Q9NU39 408 aa17.82■□□□□ 0.44
UBR1-205ENST00000564540 SAMD1Q6SPF0 538 aaPredicted RBP17.8■□□□□ 0.44
UBR1-205ENST00000564540 EHMT2Q96KQ7 1210 aa17.71■□□□□ 0.43
UBR1-205ENST00000564540 RBM42Q9BTD8 480 aaKnown RBP17.7■□□□□ 0.42
UBR1-205ENST00000564540 MYCNP04198 464 aaPredicted RBP17.65■□□□□ 0.42
UBR1-205ENST00000564540 CSRNP3Q8WYN3 585 aa17.57■□□□□ 0.4
UBR1-205ENST00000564540 CHRDL2Q6WN34 429 aa17.49■□□□□ 0.39
UBR1-205ENST00000564540 POLA2Q14181 598 aa17.44■□□□□ 0.38
UBR1-205ENST00000564540 ATF5Q9Y2D1 282 aaPredicted RBP17.28■□□□□ 0.36
UBR1-205ENST00000564540 AKT1S1Q96B36 256 aa17.18■□□□□ 0.34
UBR1-205ENST00000564540 ATXN8OSP0DMR3 200 aa17.17■□□□□ 0.34
UBR1-205ENST00000564540 SP7Q8TDD2 431 aaPredicted RBP17.12■□□□□ 0.33
UBR1-205ENST00000564540 ZBTB12Q9Y330 459 aaPredicted RBP17.11■□□□□ 0.33
UBR1-205ENST00000564540 REM2Q8IYK8 340 aaPredicted RBP17■□□□□ 0.31
UBR1-205ENST00000564540 PIP4P2Q8N4L2 257 aa16.95■□□□□ 0.3
UBR1-205ENST00000564540 OSCARQ8IYS5 282 aa16.9■□□□□ 0.3
UBR1-205ENST00000564540 FXR2P51116 673 aaKnown RBP eCLIP16.82■□□□□ 0.28
UBR1-205ENST00000564540 PITPNM1O00562 1244 aa16.81■□□□□ 0.28
UBR1-205ENST00000564540 HAX1O00165 279 aa16.75■□□□□ 0.27
UBR1-205ENST00000564540 SPDYE2BA6NHP3 402 aa16.53■□□□□ 0.24
UBR1-205ENST00000564540 SPDYE6P0CI01 402 aa16.53■□□□□ 0.24
UBR1-205ENST00000564540 SPDYE2Q495Y8 402 aa16.53■□□□□ 0.24
UBR1-205ENST00000564540 EVX2Q03828 476 aa16.52■□□□□ 0.24
UBR1-205ENST00000564540 MKRN4PQ13434 485 aaPredicted RBP16.5■□□□□ 0.23
UBR1-205ENST00000564540 FBLN2P98095 1184 aa16.47■□□□□ 0.23
UBR1-205ENST00000564540 SPDYE1Q8NFV5 336 aaPredicted RBP16.35■□□□□ 0.21
UBR1-205ENST00000564540 PRKAR2AP13861 404 aaKnown RBP16.34■□□□□ 0.21
UBR1-205ENST00000564540 C19orf67A6NJJ6 358 aa16.29■□□□□ 0.2
UBR1-205ENST00000564540 SSUH2Q9Y2M2 353 aa16.28■□□□□ 0.2
UBR1-205ENST00000564540 CLEC11AQ9Y240 323 aa16.25■□□□□ 0.19
UBR1-205ENST00000564540 ZNF692Q9BU19 519 aaPredicted RBP16.19■□□□□ 0.18
UBR1-205ENST00000564540 GABBR2O75899 941 aa16.15■□□□□ 0.18
UBR1-205ENST00000564540 LHX8Q68G74 356 aa16.03■□□□□ 0.16
UBR1-205ENST00000564540 CHADLQ6NUI6 762 aa16.02■□□□□ 0.16
UBR1-205ENST00000564540 SPDYE4A6NLX3 237 aa16.01■□□□□ 0.15
UBR1-205ENST00000564540 PRR29P0C7W0 189 aa15.96■□□□□ 0.15
UBR1-205ENST00000564540 PABPN1Q86U42 306 aaKnown RBP eCLIP15.94■□□□□ 0.14
UBR1-205ENST00000564540 FKBP8Q14318 412 aa15.89■□□□□ 0.13
UBR1-205ENST00000564540 POTEIP0CG38 1075 aa15.81■□□□□ 0.12
UBR1-205ENST00000564540 CLCN6P51797 869 aa15.81■□□□□ 0.12
UBR1-205ENST00000564540 CD44P16070 742 aaKnown RBP15.8■□□□□ 0.12
UBR1-205ENST00000564540 FARP1Q9Y4F1 1045 aaPredicted RBP15.8■□□□□ 0.12
UBR1-205ENST00000564540 PROM2Q8N271 834 aa15.71■□□□□ 0.11
UBR1-205ENST00000564540 ZNF579Q8NAF0 562 aaKnown RBP15.6■□□□□ 0.09
UBR1-205ENST00000564540 DCBLD2Q96PD2 775 aa15.56■□□□□ 0.08
UBR1-205ENST00000564540 STAG3Q9UJ98 1225 aa15.51■□□□□ 0.07
UBR1-205ENST00000564540 CREBZFQ9NS37 354 aa15.48■□□□□ 0.07
UBR1-205ENST00000564540 ZRANB1Q9UGI0 708 aa15.48■□□□□ 0.07
UBR1-205ENST00000564540 GALR2O43603 387 aaPredicted RBP15.38■□□□□ 0.05
UBR1-205ENST00000564540 OTUD5Q96G74 571 aa15.33■□□□□ 0.04
UBR1-205ENST00000564540 PLSCR2Q9NRY7 297 aa15.33■□□□□ 0.04
UBR1-205ENST00000564540 FBXO3Q9UK99 471 aa15.3■□□□□ 0.04
UBR1-205ENST00000564540 POTEB2H3BUK9 544 aa15.26■□□□□ 0.03
UBR1-205ENST00000564540 PAK3O75914 559 aaPredicted RBP15.26■□□□□ 0.03
UBR1-205ENST00000564540 PHF12Q96QT6 1004 aa15.22■□□□□ 0.03
UBR1-205ENST00000564540 MIER1Q8N108 512 aa15.2■□□□□ 0.02
UBR1-205ENST00000564540 MNX1P50219 401 aaPredicted RBP15.19■□□□□ 0.02
UBR1-205ENST00000564540 NPM1P06748 294 aaKnown RBP eCLIP15.17■□□□□ 0.02
UBR1-205ENST00000564540 PLCD3Q8N3E9 789 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms