Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ATF3-206ENST00000366987 1917 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.764e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-232ENST00000584712 782 ntTSL 210.21□□□□□ -0.784e-10■■■■■ 40.1
SF3B1O75533 UBB-204ENST00000535788 704 ntTSL 2 BASIC10.02□□□□□ -0.814e-7■■■■■ 40.1
SF3B1O75533 KPNB1-207ENST00000579901 594 ntTSL 49.97□□□□□ -0.814e-7■■■■■ 40.1
SF3B1O75533 PGAP2-228ENST00000524661 483 ntTSL 39.85□□□□□ -0.834e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-212ENST00000579085 569 ntTSL 49.81□□□□□ -0.844e-10■■■■■ 40.1
SF3B1O75533 WWP2-205ENST00000563618 636 ntTSL 29.67□□□□□ -0.864e-7■■■■■ 40.1
SF3B1O75533 MED23-202ENST00000368053 2811 ntTSL 1 (best) BASIC9.55□□□□□ -0.884e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-237ENST00000585024 577 ntTSL 49.49□□□□□ -0.894e-10■■■■■ 40.1
SF3B1O75533 RAI14-213ENST00000508777 1387 ntTSL 1 (best)9.32□□□□□ -0.924e-7■■■■■ 40.1
SF3B1O75533 ADIPOR2-204ENST00000537545 484 ntTSL 39.25□□□□□ -0.935e-6■■■■■ 40.1
SF3B1O75533 FBXO38-202ENST00000340253 4424 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.944e-7■■■■■ 40.1
SF3B1O75533 TBC1D32-203ENST00000398197 2690 ntTSL 28.99□□□□□ -0.974e-7■■■■■ 40.1
SF3B1O75533 PABPC4-209ENST00000468476 3592 ntTSL 28.96□□□□□ -0.984e-10■■■■■ 40.1
SF3B1O75533 FBXO38-203ENST00000394370 4132 ntTSL 1 (best) BASIC8.85□□□□□ -0.994e-7■■■■■ 40.1
SF3B1O75533 FBXO38-201ENST00000296701 3680 ntTSL 2 BASIC8.82□□□□□ -14e-7■■■■■ 40.1
SF3B1O75533 ATF3-205ENST00000366985 516 ntTSL 58.54□□□□□ -1.044e-7■■■■■ 40.1
SF3B1O75533 RAI14-220ENST00000512629 2941 ntTSL 1 (best) BASIC8.49□□□□□ -1.054e-7■■■■■ 40.1
SF3B1O75533 MED23-209ENST00000539158 1636 ntTSL 1 (best) BASIC8.25□□□□□ -1.094e-10■■■■■ 40.1
SF3B1O75533 TBC1D32-206ENST00000464622 5323 ntTSL 28.24□□□□□ -1.094e-7■■■■■ 40.1
SF3B1O75533 ATG13-205ENST00000525850 562 ntTSL 48.13□□□□□ -1.114e-7■■■■■ 40.1
SF3B1O75533 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.124e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-202ENST00000396527 1169 ntTSL 28.03□□□□□ -1.124e-10■■■■■ 40.1
SF3B1O75533 NLRP1-212ENST00000574512 4506 ntTSL 1 (best)7.87□□□□□ -1.154e-7■■■■■ 40.1
SF3B1O75533 PTK2-209ENST00000518509 569 ntTSL 47.79□□□□□ -1.164e-7■■■■■ 40.1
SF3B1O75533 ATF3-203ENST00000366981 680 ntTSL 1 (best)7.65□□□□□ -1.184e-7■■■■■ 40.1
SF3B1O75533 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.46□□□□□ -1.224e-7■■■■■ 40.1
SF3B1O75533 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.4□□□□□ -1.234e-7■■■■■ 40.1
SF3B1O75533 RAI14-212ENST00000508315 579 ntTSL 47.33□□□□□ -1.244e-7■■■■■ 40.1
SF3B1O75533 RAI14-223ENST00000514036 575 ntTSL 47.33□□□□□ -1.244e-7■■■■■ 40.1
SF3B1O75533 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC7.29□□□□□ -1.244e-7■■■■■ 40.1
SF3B1O75533 FBXO42-204ENST00000478089 2920 ntTSL 1 (best)7.21□□□□□ -1.264e-7■■■■■ 40.1
SF3B1O75533 RAI14-217ENST00000511652 470 ntTSL 36.85□□□□□ -1.314e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-230ENST00000583899 665 ntTSL 36.8□□□□□ -1.324e-10■■■■■ 40.1
SF3B1O75533 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.34□□□□□ -1.394e-7■■■■■ 40.1
SF3B1O75533 RAI14-204ENST00000503222 562 ntTSL 46.17□□□□□ -1.424e-7■■■■■ 40.1
SF3B1O75533 RAI14-218ENST00000512305 542 ntTSL 46.17□□□□□ -1.424e-7■■■■■ 40.1
SF3B1O75533 RAI14-227ENST00000515448 522 ntTSL 46.17□□□□□ -1.424e-7■■■■■ 40.1
SF3B1O75533 FBXO38-209ENST00000505399 843 ntTSL 56.14□□□□□ -1.434e-7■■■■■ 40.1
SF3B1O75533 SEC13-219ENST00000492602 393 ntTSL 36.04□□□□□ -1.444e-7■■■■■ 40.1
SF3B1O75533 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.94□□□□□ -1.464e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-211ENST00000578754 547 ntTSL 45.91□□□□□ -1.464e-10■■■■■ 40.1
SF3B1O75533 AC093752.1-208ENST00000498873 981 ntTSL 55.82□□□□□ -1.484e-7■■■■■ 40.1
SF3B1O75533 TMEM63A-207ENST00000487971 488 ntTSL 35.74□□□□□ -1.494e-7■■■■■ 40.1
SF3B1O75533 RAI14-219ENST00000512625 554 ntTSL 45.45□□□□□ -1.544e-7■■■■■ 40.1
SF3B1O75533 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.53□□□□□ -1.684e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-224ENST00000582213 560 ntTSL 44.33□□□□□ -1.724e-10■■■■■ 40.1
SF3B1O75533 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.744e-7■■■■■ 40.1
SF3B1O75533 IVNS1ABP-207ENST00000480769 3776 ntTSL 1 (best)3.97□□□□□ -1.774e-7■■■■■ 40.1
SF3B1O75533 ZDHHC17-211ENST00000550789 686 ntTSL 33.67□□□□□ -1.824e-7■■■■■ 40.1
SF3B1O75533 CNOT4-209ENST00000473470 707 ntTSL 23.32□□□□□ -1.884e-10■■■■■ 40.1
SF3B1O75533 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.66□□□□□ -1.984e-7■■■■■ 40.1
SF3B1O75533 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.52□□□□□ -2.014e-7■■■■■ 40.1
SF3B1O75533 LMAN1-205ENST00000592562 576 ntTSL 21.11□□□□□ -2.234e-7■■■■■ 40.1
SF3B1O75533 RAI14-216ENST00000510386 423 ntTSL 20.68□□□□□ -2.34e-7■■■■■ 40.1
SF3B1O75533 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.03■□□□□ 0.964e-6■■■■■ 40.1
SF3B1O75533 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.5■□□□□ 0.234e-6■■■■■ 40.1
SF3B1O75533 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.124e-6■■■■■ 40.1
SF3B1O75533 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.024e-6■■■■■ 40.1
SF3B1O75533 MARK3-201ENST00000216288 2911 ntTSL 1 (best) BASIC12.45□□□□□ -0.424e-6■■■■■ 40.1
SF3B1O75533 MARK3-207ENST00000553942 2298 ntTSL 1 (best) BASIC9.59□□□□□ -0.874e-6■■■■■ 40.1
SF3B1O75533 MARK3-203ENST00000335102 2331 ntTSL 5 BASIC9.24□□□□□ -0.934e-6■■■■■ 40.1
SF3B1O75533 MARK3-223ENST00000561071 746 ntTSL 37.67□□□□□ -1.184e-6■■■■■ 40.1
SF3B1O75533 RECQL4-208ENST00000534626 1165 ntTSL 518.49■□□□□ 0.554e-7■■■■■ 40.1
SF3B1O75533 MAPK8-210ENST00000432379 907 ntTSL 319.28■□□□□ 0.682e-6■■■■■ 40
SF3B1O75533 MAPK8-208ENST00000426557 860 ntTSL 416.06■□□□□ 0.162e-6■■■■■ 40
SF3B1O75533 MAPK8-209ENST00000429041 603 ntTSL 511.55□□□□□ -0.562e-6■■■■■ 40
SF3B1O75533 MAPK8-207ENST00000395611 5844 ntAPPRIS ALT1 TSL 2 BASIC11.07□□□□□ -0.642e-6■■■■■ 40
SF3B1O75533 MAPK8-206ENST00000374189 5796 ntAPPRIS ALT1 TSL 5 BASIC10.47□□□□□ -0.732e-6■■■■■ 40
SF3B1O75533 MAPK8-215ENST00000476134 732 ntTSL 33.48□□□□□ -1.852e-6■■■■■ 40
SF3B1O75533 COPA-203ENST00000481040 578 ntTSL 34.79□□□□□ -1.643e-6■■■■■ 40
SF3B1O75533 HDGF-208ENST00000482651 966 ntTSL 39.56□□□□□ -0.883e-7■■■■■ 39.9
SF3B1O75533 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.77■□□□□ 0.762e-6■■■■■ 39.9
SF3B1O75533 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.87■□□□□ 0.132e-6■■■■■ 39.9
SF3B1O75533 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.092e-6■■■■■ 39.9
SF3B1O75533 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.072e-6■■■■■ 39.9
SF3B1O75533 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.56□□□□□ -0.082e-6■■■■■ 39.9
SF3B1O75533 MACF1-216ENST00000476350 5304 ntTSL 28.74□□□□□ -1.015e-6■■■■■ 39.9
SF3B1O75533 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.384e-6■■■■■ 39.9
SF3B1O75533 TTC37-213ENST00000514952 2102 ntTSL 1 (best)3.23□□□□□ -1.894e-6■■■■■ 39.9
SF3B1O75533 BTNL9-208ENST00000512570 885 ntTSL 516.91■□□□□ 0.32e-6■■■■■ 39.8
SF3B1O75533 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.252e-6■■■■■ 39.8
SF3B1O75533 ZNF692-210ENST00000476503 1006 ntAPPRIS ALT2 TSL 318.95■□□□□ 0.622e-6■■■■■ 39.8
SF3B1O75533 ZNF692-213ENST00000482023 851 ntTSL 512.2□□□□□ -0.462e-6■■■■■ 39.8
SF3B1O75533 ZNF692-209ENST00000474351 867 ntTSL 211.09□□□□□ -0.632e-6■■■■■ 39.8
SF3B1O75533 RFWD2-209ENST00000491600 773 ntTSL 55.24□□□□□ -1.572e-6■■■■■ 39.8
SF3B1O75533 RFWD2-210ENST00000498306 617 ntTSL 53.71□□□□□ -1.812e-6■■■■■ 39.8
SF3B1O75533 BRWD1-207ENST00000430093 1656 ntTSL 1 (best)4.5□□□□□ -1.692e-6■■■■■ 39.8
SF3B1O75533 BRWD1-208ENST00000445245 1682 ntTSL 1 (best)4.5□□□□□ -1.692e-6■■■■■ 39.8
SF3B1O75533 BRWD1-205ENST00000412604 1756 ntTSL 1 (best)3.7□□□□□ -1.822e-6■■■■■ 39.8
SF3B1O75533 BRWD1-211ENST00000455867 1644 ntTSL 1 (best)3.64□□□□□ -1.832e-6■■■■■ 39.8
SF3B1O75533 BRWD1-209ENST00000445668 1593 ntTSL 1 (best)3.53□□□□□ -1.842e-6■■■■■ 39.8
SF3B1O75533 LAMA5-205ENST00000464134 637 ntTSL 214.18□□□□□ -0.144e-6■■■■■ 39.8
SF3B1O75533 TANGO2-225ENST00000490121 125 ntTSL 311.6□□□□□ -0.556e-8■■■■■ 39.7
SF3B1O75533 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.243e-6■■■■■ 39.7
SF3B1O75533 TMOD1-203ENST00000395211 3259 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.823e-6■■■■■ 39.7
SF3B1O75533 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.24e-7■■■■■ 39.7
SF3B1O75533 RCC1-207ENST00000427469 903 ntTSL 514.38□□□□□ -0.113e-6■■■■■ 39.6
SF3B1O75533 RCC1-210ENST00000434290 1070 ntTSL 514.37□□□□□ -0.113e-6■■■■■ 39.6
SF3B1O75533 RCC1-206ENST00000419074 997 ntTSL 514.21□□□□□ -0.133e-6■■■■■ 39.6
Retrieved 100 of 46,956 protein–RNA pairs in 3677.9 ms