RNA–Protein interactions for RNA: ENST00000481040.1

COPA-203, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 3

Gene COPA, Length 578 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-203ENST00000481040 AEBP2Q6ZN18 517 aaPredicted RBP23.09■■□□□ 1.29
COPA-203ENST00000481040 CHIC1Q5VXU3 224 aa21.94■■□□□ 1.1
COPA-203ENST00000481040 SENP3Q9H4L4 574 aaPredicted RBP19.49■□□□□ 0.71
COPA-203ENST00000481040 PHF23Q9BUL5 403 aaPredicted RBP19.34■□□□□ 0.69
COPA-203ENST00000481040 FOXD1Q16676 465 aa18.27■□□□□ 0.52
COPA-203ENST00000481040 PLPPR3Q6T4P5 718 aa17.5■□□□□ 0.39
COPA-203ENST00000481040 PPP6R1Q9UPN7 881 aa17.24■□□□□ 0.35
COPA-203ENST00000481040 ADRA2BP18089 450 aa17.15■□□□□ 0.34
COPA-203ENST00000481040 PIAS4Q8N2W9 510 aaPredicted RBP17.04■□□□□ 0.32
COPA-203ENST00000481040 MSH5O43196 834 aa16.91■□□□□ 0.3
COPA-203ENST00000481040 POTEDQ86YR6 584 aa16.43■□□□□ 0.22
COPA-203ENST00000481040 MAPK8IP2Q13387 824 aaPredicted RBP15.74■□□□□ 0.11
COPA-203ENST00000481040 DMRT2Q9Y5R5 561 aa15.53■□□□□ 0.08
COPA-203ENST00000481040 SCAF1Q9H7N4 1312 aaKnown RBP15.47■□□□□ 0.07
COPA-203ENST00000481040 PPP4R3CPQ6ZMV5 832 aa15.42■□□□□ 0.06
COPA-203ENST00000481040 CNKSR2Q8WXI2 1034 aa15.04■□□□□ -0
COPA-203ENST00000481040 HOXD11P31277 338 aaPredicted RBP15.01□□□□□ -0.01
COPA-203ENST00000481040 RNF216Q9NWF9 866 aaPredicted RBP14.89□□□□□ -0.03
COPA-203ENST00000481040 DCAF8L1A6NGE4 600 aa14.83□□□□□ -0.04
COPA-203ENST00000481040 NCBP3Q53F19 620 aaKnown RBP14.73□□□□□ -0.05
COPA-203ENST00000481040 NPM3O75607 178 aaKnown RBP14.68□□□□□ -0.06
COPA-203ENST00000481040 KCNA4P22459 653 aa14.54□□□□□ -0.08
COPA-203ENST00000481040 RNF39Q9H2S5 420 aa14.53□□□□□ -0.08
COPA-203ENST00000481040 CACNB1Q02641 598 aaPredicted RBP14.47□□□□□ -0.09
COPA-203ENST00000481040 DNAJC5BQ9UF47 199 aa14.37□□□□□ -0.11
COPA-203ENST00000481040 EHMT2Q96KQ7 1210 aa14.3□□□□□ -0.12
COPA-203ENST00000481040 C1QBPQ07021 282 aaKnown RBP14.24□□□□□ -0.13
COPA-203ENST00000481040 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.24□□□□□ -0.13
COPA-203ENST00000481040 U3KPZ7 1027 aaPredicted RBP14.06□□□□□ -0.16
COPA-203ENST00000481040 SLC4A2P04920 1241 aa14.04□□□□□ -0.16
COPA-203ENST00000481040 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
COPA-203ENST00000481040 CSRNP3Q8WYN3 585 aa13.75□□□□□ -0.21
COPA-203ENST00000481040 SLC4A1APQ9BWU0 796 aaKnown RBP13.72□□□□□ -0.21
COPA-203ENST00000481040 CAPN15O75808 1086 aa13.7□□□□□ -0.22
COPA-203ENST00000481040 DSG3P32926 999 aa13.66□□□□□ -0.22
COPA-203ENST00000481040 TRHP20396 242 aaPredicted RBP13.53□□□□□ -0.24
COPA-203ENST00000481040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.49□□□□□ -0.25
COPA-203ENST00000481040 MYCNP04198 464 aaPredicted RBP13.49□□□□□ -0.25
COPA-203ENST00000481040 HNRNPUL2Q1KMD3 747 aaKnown RBP13.49□□□□□ -0.25
COPA-203ENST00000481040 SAMD1Q6SPF0 538 aaPredicted RBP13.48□□□□□ -0.25
COPA-203ENST00000481040 ABCB7O75027 752 aa13.47□□□□□ -0.25
COPA-203ENST00000481040 ZBTB22O15209 634 aa13.44□□□□□ -0.26
COPA-203ENST00000481040 FOXD4L1Q9NU39 408 aa13.44□□□□□ -0.26
COPA-203ENST00000481040 ZNF219Q9P2Y4 722 aaPredicted RBP13.44□□□□□ -0.26
COPA-203ENST00000481040 APLP2Q06481 763 aa13.43□□□□□ -0.26
COPA-203ENST00000481040 ATF5Q9Y2D1 282 aaPredicted RBP13.33□□□□□ -0.28
COPA-203ENST00000481040 POLA2Q14181 598 aa13.2□□□□□ -0.3
COPA-203ENST00000481040 ATXN8OSP0DMR3 200 aa12.95□□□□□ -0.34
COPA-203ENST00000481040 RBM42Q9BTD8 480 aaKnown RBP12.89□□□□□ -0.35
COPA-203ENST00000481040 SLC24A1O60721 1099 aa12.88□□□□□ -0.35
COPA-203ENST00000481040 POTEHQ6S545 545 aa12.86□□□□□ -0.35
COPA-203ENST00000481040 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
COPA-203ENST00000481040 ZBTB12Q9Y330 459 aaPredicted RBP12.82□□□□□ -0.36
COPA-203ENST00000481040 RTN4Q9NQC3 1192 aaKnown RBP12.75□□□□□ -0.37
COPA-203ENST00000481040 AMER1Q5JTC6 1135 aaPredicted RBP12.73□□□□□ -0.37
COPA-203ENST00000481040 MKRN4PQ13434 485 aaPredicted RBP12.71□□□□□ -0.37
COPA-203ENST00000481040 AKT1S1Q96B36 256 aa12.67□□□□□ -0.38
COPA-203ENST00000481040 CHRDL2Q6WN34 429 aa12.66□□□□□ -0.38
COPA-203ENST00000481040 REM2Q8IYK8 340 aaPredicted RBP12.61□□□□□ -0.39
COPA-203ENST00000481040 FBLN2P98095 1184 aa12.58□□□□□ -0.4
COPA-203ENST00000481040 PITPNM1O00562 1244 aa12.51□□□□□ -0.41
COPA-203ENST00000481040 SPDYE2BA6NHP3 402 aa12.5□□□□□ -0.41
COPA-203ENST00000481040 SPDYE6P0CI01 402 aa12.5□□□□□ -0.41
COPA-203ENST00000481040 SPDYE2Q495Y8 402 aa12.5□□□□□ -0.41
COPA-203ENST00000481040 SSUH2Q9Y2M2 353 aa12.43□□□□□ -0.42
COPA-203ENST00000481040 PIP4P2Q8N4L2 257 aa12.42□□□□□ -0.42
COPA-203ENST00000481040 ZNF692Q9BU19 519 aaPredicted RBP12.38□□□□□ -0.43
COPA-203ENST00000481040 FKBP8Q14318 412 aa12.37□□□□□ -0.43
COPA-203ENST00000481040 FXR2P51116 673 aaKnown RBP eCLIP12.35□□□□□ -0.436e-11■■■■□ 22.2
COPA-203ENST00000481040 CLEC11AQ9Y240 323 aa12.25□□□□□ -0.45
COPA-203ENST00000481040 PABPN1Q86U42 306 aaKnown RBP eCLIP12.24□□□□□ -0.45
COPA-203ENST00000481040 SPDYE1Q8NFV5 336 aaPredicted RBP12.24□□□□□ -0.45
COPA-203ENST00000481040 PRKAR2AP13861 404 aaKnown RBP12.14□□□□□ -0.47
COPA-203ENST00000481040 EVX2Q03828 476 aa12.12□□□□□ -0.47
COPA-203ENST00000481040 SP7Q8TDD2 431 aaPredicted RBP12.1□□□□□ -0.47
COPA-203ENST00000481040 HAX1O00165 279 aa12.09□□□□□ -0.47
COPA-203ENST00000481040 CHADLQ6NUI6 762 aa12.09□□□□□ -0.47
COPA-203ENST00000481040 SPDYE4A6NLX3 237 aa12.05□□□□□ -0.48
COPA-203ENST00000481040 PRR29P0C7W0 189 aa12.03□□□□□ -0.48
COPA-203ENST00000481040 C19orf67A6NJJ6 358 aa11.95□□□□□ -0.5
COPA-203ENST00000481040 CREBZFQ9NS37 354 aa11.87□□□□□ -0.51
COPA-203ENST00000481040 FARP1Q9Y4F1 1045 aaPredicted RBP11.86□□□□□ -0.51
COPA-203ENST00000481040 PROM2Q8N271 834 aa11.85□□□□□ -0.51
COPA-203ENST00000481040 STAG3Q9UJ98 1225 aa11.81□□□□□ -0.52
COPA-203ENST00000481040 CD44P16070 742 aaKnown RBP11.75□□□□□ -0.53
COPA-203ENST00000481040 GABBR2O75899 941 aa11.74□□□□□ -0.53
COPA-203ENST00000481040 MNX1P50219 401 aaPredicted RBP11.72□□□□□ -0.53
COPA-203ENST00000481040 PLCB2Q00722 1185 aa11.72□□□□□ -0.53
COPA-203ENST00000481040 FBXO3Q9UK99 471 aa11.68□□□□□ -0.54
COPA-203ENST00000481040 ZRANB1Q9UGI0 708 aa11.6□□□□□ -0.55
COPA-203ENST00000481040 POTEIP0CG38 1075 aa11.59□□□□□ -0.55
COPA-203ENST00000481040 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
COPA-203ENST00000481040 HAP1P54257 671 aaPredicted RBP11.57□□□□□ -0.56
COPA-203ENST00000481040 PHF12Q96QT6 1004 aa11.52□□□□□ -0.57
COPA-203ENST00000481040 VASPP50552 380 aaPredicted RBP11.51□□□□□ -0.57
COPA-203ENST00000481040 GALR2O43603 387 aaPredicted RBP11.5□□□□□ -0.57
COPA-203ENST00000481040 NPM1P06748 294 aaKnown RBP eCLIP11.49□□□□□ -0.57
COPA-203ENST00000481040 DCAF8L2P0C7V8 631 aa11.48□□□□□ -0.57
COPA-203ENST00000481040 BCANQ96GW7 911 aa11.48□□□□□ -0.57
COPA-203ENST00000481040 MIER1Q8N108 512 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms