RNA–Protein interactions for RNA: ENST00000356948.10

PTBP1-203, Transcript of polypyrimidine tract binding protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PTBP1, Length 3,598 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-203ENST00000356948 NISCHQ9Y2I1 1504 aa31.23■■■□□ 2.59
PTBP1-203ENST00000356948 SHROOM4Q9ULL8 1493 aa27.36■■□□□ 1.97
PTBP1-203ENST00000356948 SUPT5HO00267 1087 aaKnown RBP26.82■■□□□ 1.88
PTBP1-203ENST00000356948 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
PTBP1-203ENST00000356948 ZCCHC6Q5VYS8 1495 aaKnown RBP26.39■■□□□ 1.81
PTBP1-203ENST00000356948 CCDC180Q9P1Z9 1646 aa26.16■■□□□ 1.78
PTBP1-203ENST00000356948 MYO15BQ96JP2 1530 aa25.92■■□□□ 1.74
PTBP1-203ENST00000356948 CHIC1Q5VXU3 224 aa25.87■■□□□ 1.73
PTBP1-203ENST00000356948 LOC105371045A0A1W2PR82 267 aa25.42■■□□□ 1.66
PTBP1-203ENST00000356948 PCGF6Q9BYE7 350 aa25.36■■□□□ 1.65
PTBP1-203ENST00000356948 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
PTBP1-203ENST00000356948 HRCP23327 699 aa25.14■■□□□ 1.61
PTBP1-203ENST00000356948 PPARGC1BQ86YN6 1023 aaKnown RBP25.09■■□□□ 1.61
PTBP1-203ENST00000356948 SCRIBQ14160 1630 aa25.09■■□□□ 1.61
PTBP1-203ENST00000356948 EHMT2Q96KQ7 1210 aa24.97■■□□□ 1.59
PTBP1-203ENST00000356948 RSF1Q96T23 1441 aaPredicted RBP24.9■■□□□ 1.58
PTBP1-203ENST00000356948 FAM9AQ8IZU1 332 aaPredicted RBP24.89■■□□□ 1.58
PTBP1-203ENST00000356948 ABCC9O60706 1549 aa24.88■■□□□ 1.57
PTBP1-203ENST00000356948 TRIM41Q8WV44 630 aa24.72■■□□□ 1.55
PTBP1-203ENST00000356948 RB1CC1Q8TDY2 1594 aa24.71■■□□□ 1.55
PTBP1-203ENST00000356948 CECR2Q9BXF3 1484 aa24.68■■□□□ 1.54
PTBP1-203ENST00000356948 TRIM26Q12899 539 aaPredicted RBP24.51■■□□□ 1.51
PTBP1-203ENST00000356948 MROH2BQ7Z745 1585 aa24.48■■□□□ 1.51
PTBP1-203ENST00000356948 WIZO95785 1651 aa24.36■■□□□ 1.49
PTBP1-203ENST00000356948 NACADO15069 1562 aa24.28■■□□□ 1.48
PTBP1-203ENST00000356948 TTBK1Q5TCY1 1321 aaPredicted RBP24.1■■□□□ 1.45
PTBP1-203ENST00000356948 PABPN1Q86U42 306 aaKnown RBP eCLIP24.01■■□□□ 1.432e-11■□□□□ 9.4
PTBP1-203ENST00000356948 ABCC8Q09428 1581 aa23.97■■□□□ 1.43
PTBP1-203ENST00000356948 BAZ1AQ9NRL2 1556 aaPredicted RBP23.92■■□□□ 1.42
PTBP1-203ENST00000356948 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.88■■□□□ 1.41
PTBP1-203ENST00000356948 CCDC88BA6NC98 1476 aa23.88■■□□□ 1.41
PTBP1-203ENST00000356948 EIF4G1Q04637 1599 aaKnown RBP23.84■■□□□ 1.41
PTBP1-203ENST00000356948 SOGA1O94964 1423 aa23.79■■□□□ 1.4
PTBP1-203ENST00000356948 UNC13AQ9UPW8 1703 aa23.76■■□□□ 1.39
PTBP1-203ENST00000356948 SMARCA4P51532 1647 aa23.75■■□□□ 1.39
PTBP1-203ENST00000356948 RUSC2Q8N2Y8 1516 aa23.74■■□□□ 1.39
PTBP1-203ENST00000356948 ZEB1P37275 1124 aaPredicted RBP23.72■■□□□ 1.39
PTBP1-203ENST00000356948 TOP2AP11388 1531 aaKnown RBP23.71■■□□□ 1.39
PTBP1-203ENST00000356948 PELP1Q8IZL8 1130 aaKnown RBP23.71■■□□□ 1.39
PTBP1-203ENST00000356948 SMARCA2P51531 1590 aa23.7■■□□□ 1.38
PTBP1-203ENST00000356948 CCER1Q8TC90 406 aaPredicted RBP23.62■■□□□ 1.37
PTBP1-203ENST00000356948 UBTFP17480 764 aaKnown RBP23.6■■□□□ 1.37
PTBP1-203ENST00000356948 CEP162Q5TB80 1403 aa23.55■■□□□ 1.36
PTBP1-203ENST00000356948 RANGAP1P46060 587 aaPredicted RBP23.52■■□□□ 1.36
PTBP1-203ENST00000356948 CSRNP3Q8WYN3 585 aa23.51■■□□□ 1.35
PTBP1-203ENST00000356948 BICRAQ9NZM4 1560 aa23.49■■□□□ 1.35
PTBP1-203ENST00000356948 SCAF1Q9H7N4 1312 aaKnown RBP23.42■■□□□ 1.34
PTBP1-203ENST00000356948 TNIKQ9UKE5 1360 aa23.35■■□□□ 1.33
PTBP1-203ENST00000356948 WRNQ14191 1432 aaPredicted RBP eCLIP23.34■■□□□ 1.333e-6■■■■□ 19.3
PTBP1-203ENST00000356948 SYNJ1O43426 1573 aa23.28■■□□□ 1.32
PTBP1-203ENST00000356948 HNRNPUL2Q1KMD3 747 aaKnown RBP23.27■■□□□ 1.32
PTBP1-203ENST00000356948 ATAD2BQ9ULI0 1458 aa23.2■■□□□ 1.3
PTBP1-203ENST00000356948 GOLGA3Q08378 1498 aa23.19■■□□□ 1.3
PTBP1-203ENST00000356948 DIEXFQ68CQ4 756 aaKnown RBP23.17■■□□□ 1.3
PTBP1-203ENST00000356948 NEUROD1Q13562 356 aa23.14■■□□□ 1.3
PTBP1-203ENST00000356948 BAZ1BQ9UIG0 1483 aaKnown RBP23.13■■□□□ 1.29
PTBP1-203ENST00000356948 EEA1Q15075 1411 aa23.11■■□□□ 1.29
PTBP1-203ENST00000356948 RAPGEF2Q9Y4G8 1499 aa23.11■■□□□ 1.29
PTBP1-203ENST00000356948 PEG3Q9GZU2 1588 aa23.09■■□□□ 1.29
PTBP1-203ENST00000356948 CLIP1P30622 1438 aa23.06■■□□□ 1.28
PTBP1-203ENST00000356948 CEP164Q9UPV0 1460 aa23.01■■□□□ 1.27
PTBP1-203ENST00000356948 ACIN1Q9UKV3 1341 aaKnown RBP22.97■■□□□ 1.27
PTBP1-203ENST00000356948 YTHDC1Q96MU7 727 aaKnown RBP22.94■■□□□ 1.26
PTBP1-203ENST00000356948 KIF21BO75037 1637 aa22.89■■□□□ 1.26
PTBP1-203ENST00000356948 VPS8Q8N3P4 1428 aa22.88■■□□□ 1.25
PTBP1-203ENST00000356948 APLP2Q06481 763 aa22.88■■□□□ 1.25
PTBP1-203ENST00000356948 ZNF316A6NFI3 1004 aaPredicted RBP22.88■■□□□ 1.25
PTBP1-203ENST00000356948 KANK4Q5T7N3 995 aaPredicted RBP22.87■■□□□ 1.25
PTBP1-203ENST00000356948 GTF3C3Q9Y5Q9 886 aa22.87■■□□□ 1.25
PTBP1-203ENST00000356948 MIER1Q8N108 512 aa22.8■■□□□ 1.24
PTBP1-203ENST00000356948 TOP2BQ02880 1626 aa22.78■■□□□ 1.24
PTBP1-203ENST00000356948 MYT1Q01538 1121 aa22.77■■□□□ 1.24
PTBP1-203ENST00000356948 CUX1P39880 1505 aa22.73■■□□□ 1.23
PTBP1-203ENST00000356948 ITGAEP38570 1179 aa22.72■■□□□ 1.23
PTBP1-203ENST00000356948 ARAP1Q96P48 1450 aa22.69■■□□□ 1.22
PTBP1-203ENST00000356948 PRXQ9BXM0 1461 aa22.67■■□□□ 1.22
PTBP1-203ENST00000356948 CENPBP07199 599 aaPredicted RBP22.63■■□□□ 1.21
PTBP1-203ENST00000356948 BIVM-ERCC5R4GMW8 1640 aa22.62■■□□□ 1.21
PTBP1-203ENST00000356948 NCAPD3P42695 1498 aa22.6■■□□□ 1.21
PTBP1-203ENST00000356948 P3H3Q8IVL6 736 aa22.55■■□□□ 1.2
PTBP1-203ENST00000356948 DHX57Q6P158 1386 aaKnown RBP22.53■■□□□ 1.2
PTBP1-203ENST00000356948 KIF27Q86VH2 1401 aa22.53■■□□□ 1.2
PTBP1-203ENST00000356948 CFTRP13569 1480 aa22.51■■□□□ 1.19
PTBP1-203ENST00000356948 ARHGAP35Q9NRY4 1499 aa22.49■■□□□ 1.19
PTBP1-203ENST00000356948 HMGXB3Q12766 1538 aa22.48■■□□□ 1.19
PTBP1-203ENST00000356948 ERICH3Q5RHP9 1530 aa22.48■■□□□ 1.19
PTBP1-203ENST00000356948 CUX2O14529 1486 aa22.46■■□□□ 1.19
PTBP1-203ENST00000356948 ATP1B4Q9UN42 357 aaPredicted RBP22.45■■□□□ 1.18
PTBP1-203ENST00000356948 IGF1RP08069 1367 aa22.44■■□□□ 1.18
PTBP1-203ENST00000356948 CCNB3Q8WWL7 1395 aa22.34■■□□□ 1.17
PTBP1-203ENST00000356948 RRBP1Q9P2E9 1410 aaKnown RBP22.32■■□□□ 1.16
PTBP1-203ENST00000356948 FGD5Q6ZNL6 1462 aa22.31■■□□□ 1.16
PTBP1-203ENST00000356948 CARMIL1Q5VZK9 1371 aa22.31■■□□□ 1.16
PTBP1-203ENST00000356948 CADPSQ9ULU8 1353 aa22.31■■□□□ 1.16
PTBP1-203ENST00000356948 KCNH8Q96L42 1107 aa22.29■■□□□ 1.16
PTBP1-203ENST00000356948 FAM50AQ14320 339 aaKnown RBP22.28■■□□□ 1.16
PTBP1-203ENST00000356948 SIN3AQ96ST3 1273 aa22.27■■□□□ 1.15
PTBP1-203ENST00000356948 RAD54L2Q9Y4B4 1467 aa22.26■■□□□ 1.15
PTBP1-203ENST00000356948 RAB3GAP2Q9H2M9 1393 aa22.25■■□□□ 1.15
PTBP1-203ENST00000356948 PHLDB1Q86UU1 1377 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms