Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 COA1-202ENST00000310564 1085 ntAPPRIS P3 TSL 2 BASIC11.29□□□□□ -0.62e-7■□□□□ 11
SFPQP23246 COA1-205ENST00000415798 524 ntAPPRIS ALT2 TSL 410.93□□□□□ -0.662e-7■□□□□ 11
SFPQP23246 COA1-209ENST00000438444 3223 ntTSL 210.18□□□□□ -0.782e-7■□□□□ 11
SFPQP23246 NR1H4-209ENST00000551379 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC9.96□□□□□ -0.822e-7■□□□□ 11
SFPQP23246 COA1-204ENST00000415076 1737 ntTSL 39.47□□□□□ -0.892e-7■□□□□ 11
SFPQP23246 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.982e-7■□□□□ 11
SFPQP23246 COA1-210ENST00000446330 1520 ntTSL 28.76□□□□□ -1.012e-7■□□□□ 11
SFPQP23246 COA1-211ENST00000446564 1177 ntTSL 28.52□□□□□ -1.052e-7■□□□□ 11
SFPQP23246 STAG1-208ENST00000487065 2914 ntTSL 1 (best)8.12□□□□□ -1.112e-7■□□□□ 11
SFPQP23246 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC8□□□□□ -1.132e-7■□□□□ 11
SFPQP23246 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC7.51□□□□□ -1.212e-7■□□□□ 11
SFPQP23246 COA1-216ENST00000470156 569 ntTSL 1 (best)6.79□□□□□ -1.322e-7■□□□□ 11
SFPQP23246 COA1-207ENST00000420441 547 ntTSL 25.78□□□□□ -1.482e-7■□□□□ 11
SFPQP23246 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.46□□□□□ -1.542e-7■□□□□ 11
SFPQP23246 NKD1-202ENST00000564336 477 ntTSL 325.17■■□□□ 1.621e-7■□□□□ 11
SFPQP23246 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.621e-7■□□□□ 11
SFPQP23246 RNF126-207ENST00000605891 1671 ntTSL 534.29■■■■□ 3.084e-6■□□□□ 11
SFPQP23246 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.664e-6■□□□□ 11
SFPQP23246 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.52■■■□□ 2.324e-6■□□□□ 11
SFPQP23246 RNF126-203ENST00000589762 963 ntTSL 229.18■■■□□ 2.264e-6■□□□□ 11
SFPQP23246 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.14e-6■□□□□ 11
SFPQP23246 GGA2-215ENST00000569189 586 ntTSL 527.14■■□□□ 1.944e-6■□□□□ 11
SFPQP23246 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.84■■□□□ 1.894e-6■□□□□ 11
SFPQP23246 GGA2-203ENST00000562944 388 ntTSL 526.09■■□□□ 1.774e-6■□□□□ 11
SFPQP23246 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.634e-6■□□□□ 11
SFPQP23246 RNF126-205ENST00000591394 733 ntTSL 225.08■■□□□ 1.614e-6■□□□□ 11
SFPQP23246 GGA2-206ENST00000566547 603 ntTSL 224.98■■□□□ 1.594e-6■□□□□ 11
SFPQP23246 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.8■■□□□ 1.564e-6■□□□□ 11
SFPQP23246 DLG1-204ENST00000392381 2833 ntTSL 1 (best)24.77■■□□□ 1.564e-6■□□□□ 11
SFPQP23246 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.54e-6■□□□□ 11
SFPQP23246 SERGEF-207ENST00000527494 1314 ntTSL 524.07■■□□□ 1.444e-6■□□□□ 11
SFPQP23246 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.444e-6■□□□□ 11
SFPQP23246 GGA2-204ENST00000563047 366 ntTSL 523.78■■□□□ 1.44e-6■□□□□ 11
SFPQP23246 GGA2-212ENST00000568799 1403 ntTSL 523.61■■□□□ 1.374e-6■□□□□ 11
SFPQP23246 GGA2-205ENST00000563494 553 ntTSL 523.5■■□□□ 1.354e-6■□□□□ 11
SFPQP23246 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.32■■□□□ 1.324e-6■□□□□ 11
SFPQP23246 PDPK1-215ENST00000566659 451 ntTSL 322.8■■□□□ 1.244e-6■□□□□ 11
SFPQP23246 SNX25-204ENST00000506896 518 ntTSL 222.04■■□□□ 1.124e-6■□□□□ 11
SFPQP23246 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.074e-6■□□□□ 11
SFPQP23246 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.964e-6■□□□□ 11
SFPQP23246 RNF126-206ENST00000592626 652 ntTSL 221.05■□□□□ 0.964e-6■□□□□ 11
SFPQP23246 RNF126-204ENST00000590885 1436 ntTSL 520.51■□□□□ 0.874e-6■□□□□ 11
SFPQP23246 RABL6-208ENST00000464941 3361 ntTSL 219.34■□□□□ 0.694e-6■□□□□ 11
SFPQP23246 PDPK1-212ENST00000491073 2387 ntTSL 1 (best)19.18■□□□□ 0.664e-6■□□□□ 11
SFPQP23246 SERGEF-205ENST00000525422 1525 ntTSL 1 (best)18.91■□□□□ 0.624e-6■□□□□ 11
SFPQP23246 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.544e-6■□□□□ 11
SFPQP23246 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC17.43■□□□□ 0.384e-6■□□□□ 11
SFPQP23246 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.364e-6■□□□□ 11
SFPQP23246 DLG1-212ENST00000436682 543 ntTSL 217.21■□□□□ 0.354e-6■□□□□ 11
SFPQP23246 SLC19A1-203ENST00000417954 3572 ntTSL 1 (best)16.73■□□□□ 0.274e-6■□□□□ 11
SFPQP23246 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.264e-6■□□□□ 11
SFPQP23246 DLG1-207ENST00000419227 1771 ntTSL 216.54■□□□□ 0.244e-6■□□□□ 11
SFPQP23246 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.234e-6■□□□□ 11
SFPQP23246 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.194e-6■□□□□ 11
SFPQP23246 SERGEF-209ENST00000528369 559 ntTSL 316.13■□□□□ 0.174e-6■□□□□ 11
SFPQP23246 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.154e-6■□□□□ 11
SFPQP23246 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC15.84■□□□□ 0.134e-6■□□□□ 11
SFPQP23246 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.094e-6■□□□□ 11
SFPQP23246 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC15.5■□□□□ 0.074e-6■□□□□ 11
SFPQP23246 SERGEF-216ENST00000531299 440 ntTSL 215.5■□□□□ 0.074e-6■□□□□ 11
SFPQP23246 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.074e-6■□□□□ 11
SFPQP23246 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.054e-6■□□□□ 11
SFPQP23246 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC15.11■□□□□ 0.014e-6■□□□□ 11
SFPQP23246 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.024e-6■□□□□ 11
SFPQP23246 SERGEF-202ENST00000524589 494 ntTSL 214.59□□□□□ -0.074e-6■□□□□ 11
SFPQP23246 SERGEF-210ENST00000529151 898 ntTSL 314.59□□□□□ -0.074e-6■□□□□ 11
SFPQP23246 SERGEF-211ENST00000529440 439 ntTSL 214.59□□□□□ -0.074e-6■□□□□ 11
SFPQP23246 GGA2-202ENST00000562117 387 ntTSL 514.44□□□□□ -0.14e-6■□□□□ 11
SFPQP23246 DLG1-209ENST00000419553 582 ntTSL 213.83□□□□□ -0.24e-6■□□□□ 11
SFPQP23246 SERGEF-221ENST00000532546 833 ntTSL 313.81□□□□□ -0.24e-6■□□□□ 11
SFPQP23246 DENND1A-206ENST00000473039 4800 ntTSL 1 (best)13.53□□□□□ -0.244e-6■□□□□ 11
SFPQP23246 SERGEF-206ENST00000525920 497 ntTSL 312.98□□□□□ -0.334e-6■□□□□ 11
SFPQP23246 DLG1-215ENST00000448528 2977 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.354e-6■□□□□ 11
SFPQP23246 GGA2-201ENST00000309859 5973 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.364e-6■□□□□ 11
SFPQP23246 DLG1-201ENST00000346964 5034 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.434e-6■□□□□ 11
SFPQP23246 DLG1-205ENST00000392382 2690 ntTSL 5 BASIC11.91□□□□□ -0.54e-6■□□□□ 11
SFPQP23246 SERGEF-217ENST00000531926 425 ntTSL 311.74□□□□□ -0.534e-6■□□□□ 11
SFPQP23246 DENND1A-212ENST00000497135 1207 ntTSL 511.56□□□□□ -0.564e-6■□□□□ 11
SFPQP23246 DENND1A-211ENST00000491650 842 ntTSL 510.99□□□□□ -0.654e-6■□□□□ 11
SFPQP23246 DLG1-208ENST00000419354 3994 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.74e-6■□□□□ 11
SFPQP23246 DENND1A-204ENST00000394215 1380 ntTSL 5 BASIC10.2□□□□□ -0.784e-6■□□□□ 11
SFPQP23246 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC9.85□□□□□ -0.834e-6■□□□□ 11
SFPQP23246 DLG1-219ENST00000456699 629 ntTSL 39.55□□□□□ -0.884e-6■□□□□ 11
SFPQP23246 GGA2-217ENST00000570111 563 ntTSL 59.2□□□□□ -0.944e-6■□□□□ 11
SFPQP23246 SMARCC1-202ENST00000425518 3827 ntTSL 28.74□□□□□ -1.014e-6■□□□□ 11
SFPQP23246 SERGEF-222ENST00000533241 539 ntTSL 48.03□□□□□ -1.124e-6■□□□□ 11
SFPQP23246 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.134e-6■□□□□ 11
SFPQP23246 DLG1-223ENST00000471733 2605 ntTSL 1 (best)7.9□□□□□ -1.144e-6■□□□□ 11
SFPQP23246 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC7.87□□□□□ -1.154e-6■□□□□ 11
SFPQP23246 GGA2-216ENST00000569300 572 ntTSL 46.33□□□□□ -1.44e-6■□□□□ 11
SFPQP23246 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC6.31□□□□□ -1.44e-6■□□□□ 11
SFPQP23246 DLG1-203ENST00000392380 716 ntTSL 35.63□□□□□ -1.514e-6■□□□□ 11
SFPQP23246 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.554e-6■□□□□ 11
SFPQP23246 DLG1-226ENST00000485409 656 ntTSL 34.93□□□□□ -1.624e-6■□□□□ 11
SFPQP23246 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.292e-6■□□□□ 10.9
SFPQP23246 SAR1A-203ENST00000373239 468 ntTSL 315.64■□□□□ 0.092e-6■□□□□ 10.9
SFPQP23246 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.732e-6■□□□□ 10.9
SFPQP23246 WWC2-207ENST00000508614 604 ntTSL 319.59■□□□□ 0.731e-6■□□□□ 10.9
SFPQP23246 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.261e-6■□□□□ 10.9
SFPQP23246 WWC2-209ENST00000513834 4887 ntTSL 5 BASIC14.16□□□□□ -0.141e-6■□□□□ 10.9
Retrieved 100 of 4,991 protein–RNA pairs in 243.2 ms