RNA–Protein interactions for RNA: ENST00000504273.5

SNX25-202, Transcript of sorting nexin 25, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX25, Length 3,323 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25-202ENST00000504273 NISCHQ9Y2I1 1504 aa15.27■□□□□ 0.04
SNX25-202ENST00000504273 ABCC9O60706 1549 aa14.24□□□□□ -0.13
SNX25-202ENST00000504273 DNAJC5BQ9UF47 199 aa14.07□□□□□ -0.16
SNX25-202ENST00000504273 DNAJC5Q9H3Z4 198 aa13.86□□□□□ -0.19
SNX25-202ENST00000504273 CCDC180Q9P1Z9 1646 aa13.71□□□□□ -0.21
SNX25-202ENST00000504273 RB1CC1Q8TDY2 1594 aa13.43□□□□□ -0.26
SNX25-202ENST00000504273 NACADO15069 1562 aa13.17□□□□□ -0.3
SNX25-202ENST00000504273 CECR2Q9BXF3 1484 aa13.05□□□□□ -0.32
SNX25-202ENST00000504273 SHROOM4Q9ULL8 1493 aa13.04□□□□□ -0.32
SNX25-202ENST00000504273 PABPN1Q86U42 306 aaKnown RBP eCLIP13.01□□□□□ -0.33
SNX25-202ENST00000504273 CUX2O14529 1486 aa12.97□□□□□ -0.33
SNX25-202ENST00000504273 UNC13AQ9UPW8 1703 aa12.94□□□□□ -0.34
SNX25-202ENST00000504273 CC2D2AQ9P2K1 1620 aa12.93□□□□□ -0.34
SNX25-202ENST00000504273 BICRAQ9NZM4 1560 aa12.92□□□□□ -0.34
SNX25-202ENST00000504273 ZCCHC6Q5VYS8 1495 aaKnown RBP12.9□□□□□ -0.34
SNX25-202ENST00000504273 MYO15BQ96JP2 1530 aa12.8□□□□□ -0.36
SNX25-202ENST00000504273 EIF4G1Q04637 1599 aaKnown RBP12.71□□□□□ -0.37
SNX25-202ENST00000504273 TRIM41Q8WV44 630 aa12.64□□□□□ -0.39
SNX25-202ENST00000504273 CHIC1Q5VXU3 224 aa12.61□□□□□ -0.39
SNX25-202ENST00000504273 AEBP2Q6ZN18 517 aaPredicted RBP12.59□□□□□ -0.39
SNX25-202ENST00000504273 DCAF1Q9Y4B6 1507 aa12.57□□□□□ -0.4
SNX25-202ENST00000504273 ERCC6Q03468 1493 aa12.49□□□□□ -0.41
SNX25-202ENST00000504273 DCAF8L2P0C7V8 631 aa12.45□□□□□ -0.42
SNX25-202ENST00000504273 SUPT5HO00267 1087 aaKnown RBP12.38□□□□□ -0.43
SNX25-202ENST00000504273 SCRIBQ14160 1630 aa12.19□□□□□ -0.46
SNX25-202ENST00000504273 THOC2Q8NI27 1593 aaKnown RBP12.18□□□□□ -0.46
SNX25-202ENST00000504273 NCAPD3P42695 1498 aa12.11□□□□□ -0.47
SNX25-202ENST00000504273 OSCARQ8IYS5 282 aa12.09□□□□□ -0.47
SNX25-202ENST00000504273 BAZ1AQ9NRL2 1556 aaPredicted RBP12.05□□□□□ -0.48
SNX25-202ENST00000504273 LAMC3Q9Y6N6 1575 aa12.01□□□□□ -0.49
SNX25-202ENST00000504273 RSF1Q96T23 1441 aaPredicted RBP12□□□□□ -0.49
SNX25-202ENST00000504273 RIMBP3CA6NJZ7 1639 aa11.97□□□□□ -0.49
SNX25-202ENST00000504273 RIMBP3BA6NNM3 1639 aa11.97□□□□□ -0.49
SNX25-202ENST00000504273 RIMBP3Q9UFD9 1639 aa11.97□□□□□ -0.49
SNX25-202ENST00000504273 HMGXB3Q12766 1538 aa11.96□□□□□ -0.49
SNX25-202ENST00000504273 PDS5BQ9NTI5 1447 aa11.95□□□□□ -0.5
SNX25-202ENST00000504273 NESP48681 1621 aa11.92□□□□□ -0.5
SNX25-202ENST00000504273 SMARCA2P51531 1590 aa11.88□□□□□ -0.51
SNX25-202ENST00000504273 TRHP20396 242 aaPredicted RBP11.88□□□□□ -0.51
SNX25-202ENST00000504273 ILDR1Q86SU0 546 aaPredicted RBP11.87□□□□□ -0.51
SNX25-202ENST00000504273 MROH2BQ7Z745 1585 aa11.87□□□□□ -0.51
SNX25-202ENST00000504273 WDR62O43379 1518 aa11.87□□□□□ -0.51
SNX25-202ENST00000504273 MRC2Q9UBG0 1479 aa11.86□□□□□ -0.51
SNX25-202ENST00000504273 KIF21AQ7Z4S6 1674 aa11.84□□□□□ -0.51
SNX25-202ENST00000504273 ARHGEF11O15085 1522 aa11.84□□□□□ -0.51
SNX25-202ENST00000504273 ATAD2BQ9ULI0 1458 aa11.84□□□□□ -0.51
SNX25-202ENST00000504273 WIZO95785 1651 aa11.82□□□□□ -0.52
SNX25-202ENST00000504273 CYB5RLQ6IPT4 315 aa11.69□□□□□ -0.54
SNX25-202ENST00000504273 BAZ1BQ9UIG0 1483 aaKnown RBP11.68□□□□□ -0.54
SNX25-202ENST00000504273 SMARCA4P51532 1647 aa11.68□□□□□ -0.54
SNX25-202ENST00000504273 LOC105371045A0A1W2PR82 267 aa11.67□□□□□ -0.54
SNX25-202ENST00000504273 ARAP1Q96P48 1450 aa11.63□□□□□ -0.55
SNX25-202ENST00000504273 CADPSQ9ULU8 1353 aa11.63□□□□□ -0.55
SNX25-202ENST00000504273 PEG3Q9GZU2 1588 aa11.63□□□□□ -0.55
SNX25-202ENST00000504273 TOP2AP11388 1531 aaKnown RBP11.61□□□□□ -0.55
SNX25-202ENST00000504273 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
SNX25-202ENST00000504273 CCDC88BA6NC98 1476 aa11.54□□□□□ -0.56
SNX25-202ENST00000504273 ERCC6L2Q5T890 1561 aa11.49□□□□□ -0.57
SNX25-202ENST00000504273 IFT140Q96RY7 1462 aa11.47□□□□□ -0.57
SNX25-202ENST00000504273 FANCD2Q9BXW9 1451 aa11.45□□□□□ -0.58
SNX25-202ENST00000504273 ABCC8Q09428 1581 aa11.45□□□□□ -0.58
SNX25-202ENST00000504273 FAM9AQ8IZU1 332 aaPredicted RBP11.42□□□□□ -0.58
SNX25-202ENST00000504273 FBXO41Q8TF61 875 aa11.42□□□□□ -0.58
SNX25-202ENST00000504273 PCGF6Q9BYE7 350 aa11.42□□□□□ -0.58
SNX25-202ENST00000504273 PHF23Q9BUL5 403 aaPredicted RBP11.4□□□□□ -0.58
SNX25-202ENST00000504273 CHD1O14646 1710 aa11.37□□□□□ -0.59
SNX25-202ENST00000504273 HRCP23327 699 aa11.37□□□□□ -0.59
SNX25-202ENST00000504273 URB2Q14146 1524 aaKnown RBP11.37□□□□□ -0.59
SNX25-202ENST00000504273 SOCS7O14512 581 aa11.33□□□□□ -0.6
SNX25-202ENST00000504273 LMTK3Q96Q04 1460 aa11.32□□□□□ -0.6
SNX25-202ENST00000504273 CFTRP13569 1480 aa11.32□□□□□ -0.6
SNX25-202ENST00000504273 CLASP1Q7Z460 1538 aa11.31□□□□□ -0.6
SNX25-202ENST00000504273 EHMT2Q96KQ7 1210 aa11.3□□□□□ -0.6
SNX25-202ENST00000504273 ZNF608Q9ULD9 1512 aaPredicted RBP11.29□□□□□ -0.6
SNX25-202ENST00000504273 EIF4G3O43432 1585 aaKnown RBP11.29□□□□□ -0.6
SNX25-202ENST00000504273 KDM4FA0A1W2PPD8 638 aa11.29□□□□□ -0.6
SNX25-202ENST00000504273 SOGA1O94964 1423 aa11.28□□□□□ -0.6
SNX25-202ENST00000504273 RUSC2Q8N2Y8 1516 aa11.28□□□□□ -0.6
SNX25-202ENST00000504273 SYNJ1O43426 1573 aa11.27□□□□□ -0.6
SNX25-202ENST00000504273 TRIM26Q12899 539 aaPredicted RBP11.27□□□□□ -0.6
SNX25-202ENST00000504273 WDR97A6NE52 1622 aa11.23□□□□□ -0.61
SNX25-202ENST00000504273 GAPVD1Q14C86 1478 aa11.22□□□□□ -0.61
SNX25-202ENST00000504273 WRNQ14191 1432 aaPredicted RBP eCLIP11.22□□□□□ -0.61
SNX25-202ENST00000504273 PRDM2Q13029 1718 aa11.21□□□□□ -0.62
SNX25-202ENST00000504273 HECW2Q9P2P5 1572 aa11.2□□□□□ -0.62
SNX25-202ENST00000504273 KIF13AQ9H1H9 1805 aa11.18□□□□□ -0.62
SNX25-202ENST00000504273 PPARGC1BQ86YN6 1023 aaKnown RBP11.17□□□□□ -0.62
SNX25-202ENST00000504273 EEA1Q15075 1411 aa11.16□□□□□ -0.62
SNX25-202ENST00000504273 FBLN2P98095 1184 aa11.14□□□□□ -0.63
SNX25-202ENST00000504273 BIVM-ERCC5R4GMW8 1640 aa11.14□□□□□ -0.63
SNX25-202ENST00000504273 TOPBP1Q92547 1522 aa11.14□□□□□ -0.63
SNX25-202ENST00000504273 CSRNP3Q8WYN3 585 aa11.14□□□□□ -0.63
SNX25-202ENST00000504273 TOP2BQ02880 1626 aa11.14□□□□□ -0.63
SNX25-202ENST00000504273 KDM6BO15054 1643 aa11.13□□□□□ -0.63
SNX25-202ENST00000504273 TNIKQ9UKE5 1360 aa11.13□□□□□ -0.63
SNX25-202ENST00000504273 MAGI1Q96QZ7 1491 aaPredicted RBP11.12□□□□□ -0.63
SNX25-202ENST00000504273 CEP162Q5TB80 1403 aa11.12□□□□□ -0.63
SNX25-202ENST00000504273 TARBP1Q13395 1621 aaKnown RBP11.12□□□□□ -0.63
SNX25-202ENST00000504273 KIF21BO75037 1637 aa11.11□□□□□ -0.63
SNX25-202ENST00000504273 DNMBPQ6XZF7 1577 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms